GWAS0000042 | PulseDB

Genome Location

GWAS Overview


GWAS Label	GWAS0000042 [ MapViewer ]
Published Symbol	Area-Pv02
Trait Name	Seed projected area
Trait Alias	N/A
GWAS Marker	Pv_S1_53011276
GWAS Study	Bean-Seed_size_and_shape-Giordani_2022
Genome Assembly	Phaseolus vulgaris G19833 genome v2.1
Statistical Mothod	best linear unbiased estimators
Experimental Model	multilocus mixed model
GWAS Panel	N/A
LOD	N/A
P Value	1.22E-10
R2	N/A
Unique key	4694-SDAREA-S1_53011276
Effect	10.86
MAF	0.11
Allele	A/C
PVE	32.3
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Pulse Trait Ontology**
Term	Definition
156:Seed projected area	Seed projected area

Genome Location


Name	Type	Location	Analysis	MapViewer
Chr02	supercontig	Chr02:805645..805645	Phaseolus vulgaris G19833 genome v2.1	View

Publications


Year	Publication
2022	Giordani W, Gama HC, Chiorato AF, Garcia AAF, Vieira MLC. Genome-Wide Association Studies Dissect the Genetic Architecture of Seed Shape and Size in Common Bean.. G3 (Bethesda, Md.). 2022 Feb 26.

Properties


Property Name	Value
Unique key	4694-SDAREA-S1_53011276
Published symbol	Area-Pv02
Effect	10.86
MAF	0.11
Allele	A/C
P value	1.22E-10
PVE	32.3
Experimental model	multilocus mixed model
Statistical method	best linear unbiased estimators