GWAS0000070 | PulseDB

Genome Location

GWAS Overview


GWAS Label	GWAS0000070 [ MapViewer ]
Published Symbol	PDL
Trait Name	Pod length
Trait Alias	N/A
GWAS Marker	3547339\|F\|0-61:G>A-61:G>A
GWAS Study	pea-Wrinkled_Vining_Pea-Alemu-2022
Genome Assembly	Pisum sativum Cameor genome v1a
Statistical Mothod	FarmCPU
Experimental Model	multi-locus mode1
GWAS Panel	N/A
LOD	N/A
P Value	6.77E-6
R2	N/A
Unique key	4726-Ps_3547339\|F\|0-61:G>A-61:G>A
Effect	0.550723839
MAF	0.286982249
FDR	0.015575245
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Pulse Trait Ontology**
Term	Definition
MAIN:000150396	Pod length

Genome Location


Name	Type	Location	Analysis	MapViewer
chr6LG2	supercontig	chr6LG2:370819523..370819523	Pisum sativum Cameor genome v1a	View

Publications


Year	Publication
2022	Alemu A, Brantestam AK, Chawade A. Unraveling the Genetic Basis of Key Agronomic Traits of Wrinkled Vining Pea (Pisum sativum L.) for Sustainable Production.. Frontiers in plant science. 2022; 13:844450.

Properties


Property Name	Value
Unique key	4726-Ps_3547339\|F\|0-61:G>A-61:G>A
Published symbol	PDL
Effect	0.550723839
MAF	0.286982249
P value	6.77E-6
FDR	0.015575245
Experimental model	multi-locus mode1
Statistical method	FarmCPU