GWAS0000092 | PulseDB

Genome Location

GWAS Overview


GWAS Label	GWAS0000092 [ MapViewer ]
Published Symbol	PSP
Trait Name	Percent small wrinkled vining peas
Trait Alias	N/A
GWAS Marker	3546762\|F\|0-59:A>G-59:A>G
GWAS Study	pea-Wrinkled_Vining_Pea-Alemu-2022
Genome Assembly	Pisum sativum Cameor genome v1a
Statistical Mothod	FarmCPU
Experimental Model	multi-locus mode1
GWAS Panel	N/A
LOD	N/A
P Value	1.3E-6
R2	N/A
Unique key	4726-Ps_3546762\|F\|0-59:A>G-59:A>G
Effect	-0.015148972
MAF	0.372781065
FDR	0.002990458
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Pulse Trait Ontology**
Term	Definition
156:Percent small wrinkled vining peas	Percent small wrinkled vining peas

Genome Location


Name	Type	Location	Analysis	MapViewer
chr1LG6	supercontig	chr1LG6:355292026..355292026	Pisum sativum Cameor genome v1a	View

Publications


Year	Publication
2022	Alemu A, Brantestam AK, Chawade A. Unraveling the Genetic Basis of Key Agronomic Traits of Wrinkled Vining Pea (Pisum sativum L.) for Sustainable Production.. Frontiers in plant science. 2022; 13:844450.

Properties


Property Name	Value
Unique key	4726-Ps_3546762\|F\|0-59:A>G-59:A>G
Published symbol	PSP
Effect	-0.015148972
MAF	0.372781065
P value	1.3E-6
FDR	0.002990458
Experimental model	multi-locus mode1
Statistical method	FarmCPU