GWAS0000099 | PulseDB

Genome Location

GWAS Overview


GWAS Label	GWAS0000099 [ MapViewer ]
Published Symbol	YTM100
Trait Name	Wrinkled vining pea yield
Trait Alias	N/A
GWAS Marker	3547940\|F\|0-45:A>T-45:A>T
GWAS Study	pea-Wrinkled_Vining_Pea-Alemu-2022
Genome Assembly	Pisum sativum Cameor genome v1a
Statistical Mothod	FarmCPU
Experimental Model	multi-locus mode1
GWAS Panel	N/A
LOD	N/A
P Value	4.96E-5
R2	N/A
Unique key	4726-Ps_3547940\|F\|0-45:A>T-45:A>T
Effect	0.229766687
MAF	0.24260355
FDR	0.085557441
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Pulse Trait Ontology**
Term	Definition
156:Wrinkled vining pea yield	Wrinkled vining pea yield

Genome Location


Name	Type	Location	Analysis	MapViewer
scaffold03030	supercontig	scaffold03030:49540..49540	Pisum sativum Cameor genome v1a	View

Publications


Year	Publication
2022	Alemu A, Brantestam AK, Chawade A. Unraveling the Genetic Basis of Key Agronomic Traits of Wrinkled Vining Pea (Pisum sativum L.) for Sustainable Production.. Frontiers in plant science. 2022; 13:844450.

Properties


Property Name	Value
Unique key	4726-Ps_3547940\|F\|0-45:A>T-45:A>T
Published symbol	YTM100
Effect	0.229766687
MAF	0.24260355
P value	4.96E-5
FDR	0.085557441
Experimental model	multi-locus mode1
Statistical method	FarmCPU