GWAS0000357 | PulseDB

Genome Location

GWAS Overview


GWAS Label	GWAS0000357 [ MapViewer ]
Published Symbol	ss715648754
Trait Name	Bacterial wilt resistance
Trait Alias	N/A
GWAS Marker	BARC-PV_1.0_Chr10_3784843_G_T
GWAS Study	Bean-Bacterial_Wilt_Resistance-Zia-2022
Genome Assembly	Phaseolus vulgaris G19833 genome v2.1
Statistical Mothod	Tassel_MLM
Experimental Model	N/A
GWAS Panel	N/A
LOD	1.79
P Value	N/A
R2	4.49
Unique key	4791-BWR.ss715648754
MAF	26.2
Allele	G/T
Comments	Allele order is resistant/susceptible

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Pulse Trait Ontology**
Term	Definition
156:Bacterial wilt resistance	Bacterial wilt resistance

Genome Location


Name	Type	Location	Analysis	MapViewer
Chr10	supercontig	Chr10:3784843..3784843	Phaseolus vulgaris G19833 genome v2.1	View

Publications


Year	Publication
2022	Zia B, Shi A, Olaoye D, Xiong H, Ravelombola W, Gepts P, Schwartz HF, Brick MA, Otto K, Ogg B, Chen S. Genome-Wide Association Study and Genomic Prediction for Bacterial Wilt Resistance in Common Bean (Phaseolus vulgaris) Core Collection.. Frontiers in genetics. 2022; 13:853114.

Properties


Property Name	Value
Unique key	4791-BWR.ss715648754
Published symbol	ss715648754
MAF	26.2
Allele	G/T
R2	4.49
LOD	1.79
Statistical method	Tassel_MLM
Comments	Allele order is resistant/susceptible