GWAS0000466 | PulseDB

Genome Location

GWAS Overview


GWAS Label	GWAS0000466 [ MapViewer ]
Published Symbol	A. koolunga FarmCPU
Trait Name	Ascochyta blight resistance
Trait Alias	N/A
GWAS Marker	Ps_SNP-4661407
GWAS Study	Pea-Ascochyta_blight_resistance
Genome Assembly	Pisum sativum Cameor genome v1a
Statistical Mothod	FarmCPU
Experimental Model	N/A
GWAS Panel	N/A
LOD	N/A
P Value	9.07E-12
R2	N/A
Unique key	4804-ABR.A. koolunga FarmCPU
Effect	0.23
MAF	0.07
FDR	1.24E-7
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Pulse Trait Ontology**
Term	Definition
MAIN:000117245	Ascochyta blight resistance

Genome Location


Name	Type	Location	Analysis	MapViewer
chr5LG3	supercontig	chr5LG3:167437654..167437654	Pisum sativum Cameor genome v1a	View

Publications


Year	Publication
2022	Lee RC, Grime CR, O'Driscoll K, Khentry Y, Farfan-Caceres L, Tahghighi H, Kamphuis LG. Field pea (Pisum sativum L.) germplasm screening for seedling ascochyta blight resistance and genome wide association studies reveal loci associated with resistance to Peyronellaea pinodes and Ascochyta koolunga.. Phytopathology. 2022 Aug 19.

Properties


Property Name	Value
Unique key	4804-ABR.A. koolunga FarmCPU
Published symbol	A. koolunga FarmCPU
Effect	0.23
MAF	0.07
P value	9.07E-12
FDR	1.24E-7
Statistical method	FarmCPU