GT620197

EST Overview
NameGT620197
Unique NameGT620197
TypeEST
OrganismLens culinaris (lentil)
Sequence length449
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
Homology
BLAST of GT620197 vs. TrEMBL
Match: C6T089_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.168e-11
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 2
Query:    8 GTISTTDASITDPVSAAEENAFCKACARFGLGLYMYHEDKTS 133
            GTIS +D SI DPVSAAEE AFCK+CARFGLGLY+YHED+ S
Sbjct:  159 GTISPSDGSIGDPVSAAEEIAFCKSCARFGLGLYLYHEDQMS 200          
BLAST of GT620197 vs. TrEMBL
Match: C5WS27_SORBI (Putative uncharacterized protein Sb01g001020 OS=Sorghum bicolor GN=Sb01g001020 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.405e-10
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 2
Query:    8 GTISTTDASITDPVSAAEENAFCKACARFGLGLYMYHEDKT 130
            GT S +DA   DPVSAAEE AFCKACARFG GLY+YHED+T
Sbjct:  148 GTASLSDARFDDPVSAAEEAAFCKACARFGFGLYLYHEDET 188          
BLAST of GT620197 vs. TrEMBL
Match: A2XP50_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14354 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.405e-10
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 2
Query:    8 GTISTTDASITDPVSAAEENAFCKACARFGLGLYMYHEDKTS 133
            GT S  DA   DPV+AAEE AFCKACARFG GLY+YHED+TS
Sbjct:  151 GTTSLNDARFDDPVAAAEEAAFCKACARFGFGLYLYHEDETS 192          
BLAST of GT620197 vs. TrEMBL
Match: Q10AI2_ORYSJ (Os03g0851500 protein OS=Oryza sativa subsp. japonica GN=Os03g0851500 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.088e-10
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 2
Query:    8 GTISTTDASITDPVSAAEENAFCKACARFGLGLYMYHEDKT 130
            GT S  DA   DPV+AAEE AFCKACARFG GLY+YHED+T
Sbjct:  151 GTTSLNDARFDDPVAAAEEAAFCKACARFGFGLYLYHEDET 191          
BLAST of GT620197 vs. TrEMBL
Match: B9GYS9_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_412974 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.088e-10
Identity = 28/40 (70.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query:    8 GTISTTDASITDPVSAAEENAFCKACARFGLGLYMYHEDK 127
            GT+S++D +I DPV+AAEE AFC+ACARFGLGLY+YHE++
Sbjct:   86 GTVSSSDVAIEDPVAAAEEIAFCRACARFGLGLYLYHEEQ 125          
BLAST of GT620197 vs. TrEMBL
Match: A9PGP3_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.088e-10
Identity = 28/40 (70.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query:    8 GTISTTDASITDPVSAAEENAFCKACARFGLGLYMYHEDK 127
            GT+S++D +I DPV+AAEE AFC+ACARFGLGLY+YHE++
Sbjct:  182 GTVSSSDVAIEDPVAAAEEIAFCRACARFGLGLYLYHEEQ 221          
BLAST of GT620197 vs. TrEMBL
Match: B9RG45_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1439020 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.339e-10
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    8 GTISTTDASITDPVSAAEENAFCKACARFGLGLYMYHED 124
            GT+S +D  I DPV+AAEE AFCKACARFGLGLY+YHE+
Sbjct:  182 GTVSPSDGHIVDPVAAAEEIAFCKACARFGLGLYLYHEE 220          
BLAST of GT620197 vs. TrEMBL
Match: B7ZZ71_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.339e-10
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 2
Query:    8 GTISTTDASITDPVSAAEENAFCKACARFGLGLYMYHEDKT 130
            GT S +D    DPVSAAEE AFCKACARFG GLY+YHED+T
Sbjct:  148 GTASLSDERFDDPVSAAEEAAFCKACARFGFGLYLYHEDET 188          
BLAST of GT620197 vs. TrEMBL
Match: B6TP06_MAIZE (SnRK1-interacting protein 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.339e-10
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 2
Query:    8 GTISTTDASITDPVSAAEENAFCKACARFGLGLYMYHEDKT 130
            GT S +D    DPVSAAEE AFCKACARFG GLY+YHED+T
Sbjct:  148 GTASLSDERFDDPVSAAEEAAFCKACARFGFGLYLYHEDET 188          
BLAST of GT620197 vs. TrEMBL
Match: Q9FIJ4_ARATH (At5g47870 OS=Arabidopsis thaliana GN=At5g47870 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.973e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 2
Query:    8 GTISTTDASITDPVSAAEENAFCKACARFGLGLYMYHE 121
            GT++TTD  I DPV+AAEE AFC+ACARFGLGLY+YHE
Sbjct:  162 GTVTTTDDHIEDPVTAAEEIAFCRACARFGLGLYLYHE 199          
BLAST of GT620197 vs. TAIR peptide
Match: AT5G47870.1 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19384555-19385808 REVERSE LENGTH=199)

HSP 1 Score: 67.0106 bits (162), Expect = 4.882e-12
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 2
Query:    8 GTISTTDASITDPVSAAEENAFCKACARFGLGLYMYHE 121
            GT++TTD  I DPV+AAEE AFC+ACARFGLGLY+YHE
Sbjct:  162 GTVTTTDDHIEDPVTAAEEIAFCRACARFGLGLYLYHE 199          
The following BLAST results are available for this feature:
BLAST of GT620197 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6T089_SOYBN2.168e-1178.57Putative uncharacterized protein OS=Glycine max PE... [more]
C5WS27_SORBI1.405e-1075.61Putative uncharacterized protein Sb01g001020 OS=So... [more]
A2XP50_ORYSI1.405e-1073.81Putative uncharacterized protein OS=Oryza sativa s... [more]
Q10AI2_ORYSJ4.088e-1073.17Os03g0851500 protein OS=Oryza sativa subsp. japoni... [more]
B9GYS9_POPTR4.088e-1070.00Predicted protein (Fragment) OS=Populus trichocarp... [more]
A9PGP3_POPTR4.088e-1070.00Putative uncharacterized protein OS=Populus tricho... [more]
B9RG45_RICCO5.339e-1074.36Putative uncharacterized protein OS=Ricinus commun... [more]
B7ZZ71_MAIZE5.339e-1073.17Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
B6TP06_MAIZE5.339e-1073.17SnRK1-interacting protein 1 OS=Zea mays PE=2 SV=1[more]
Q9FIJ4_ARATH6.973e-1076.32At5g47870 OS=Arabidopsis thaliana GN=At5g47870 PE=... [more]
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BLAST of GT620197 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G47870.14.882e-1276.32| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
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Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT620197 ID=GT620197; Name=GT620197; organism=Lens culinaris; type=EST; length=449bp
TCAACCTGGGACAATATCAACTACTGACGCCTCGATTACTGATCCAGTTT
CGGCAGCAGAGGAAAATGCTTTCTGTAAAGCATGTGCTCGGTTTGGTCTT
GGCTTGTACATGTATCATGAAGATAAAACCAGTGGCATTTAAGCATCCAT
ATTTTTGTTCAGTTTGGTGTGTCTAAATGATATAAATAGAAGTGGGCAAA
AGGTGGATGTTAGATACTCTCGGCAAGTACTGTTGTGGAAAACTAGAAGC
CATATATGTTGTTGTGTAAGAATTCAAATGCTTATTTGAAAGCATGTTTT
TTTGTTGGTCACTTTGAATCATGGCTTATGTTTTCAGAGTTAGGGTGCCT
AAGCCTTAAATTGATAAGGAAATGAACAATTTCATCATGCTTTTATCTAT
ACCAATATATAAAAGGAAAACACCATTTTGGTGTAGCCTATTTTACTTC
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