GT621910

EST Overview
NameGT621910
Unique NameGT621910
TypeEST
OrganismLens culinaris (lentil)
Sequence length422
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT621910 vs. TrEMBL
Match: D7TW41_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019815001 PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.050e-21
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 2
Query:    2 RGRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            RGRRFL+SDKLQSLF++ID+GR VKP +YRLVRPYPRRAF   ES + L ELGLT+KQEALFLEL+
Sbjct:  673 RGRRFLKSDKLQSLFNFIDVGRAVKPGTYRLVRPYPRRAFSDGESTLSLNELGLTSKQEALFLELI 738          
BLAST of GT621910 vs. TrEMBL
Match: B9IC59_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_730970 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.794e-21
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 2
Query:    5 GRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            GRRFL+SDKLQ LFD+ID+GR VKP +YR+VRPYPRRAF V + ++ L ELGLTNKQEALFLEL+
Sbjct:  189 GRRFLKSDKLQLLFDFIDVGRAVKPGTYRVVRPYPRRAFSVSDISLSLNELGLTNKQEALFLELI 253          
BLAST of GT621910 vs. TrEMBL
Match: A9P8U1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.874e-21
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 2
Query:    2 RGRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            RGRRFL+SDKL +LFD+IDIGR VKP +YRLVRPYPRRAF   E A+ L ELGLT+KQEALFLEL+
Sbjct:  147 RGRRFLKSDKLHALFDFIDIGRVVKPGTYRLVRPYPRRAFSDGEGALTLNELGLTSKQEALFLELI 212          
BLAST of GT621910 vs. TrEMBL
Match: D7M082_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489990 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.404e-20
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 2
Query:    2 RGRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            RGRRFL+SDKLQSLF++IDI R VKP++YRLVRPYPR+AFG  ES   L +LGLT+KQEALFLEL+
Sbjct:  498 RGRRFLKSDKLQSLFNFIDIARVVKPNTYRLVRPYPRKAFGDGESESTLNDLGLTSKQEALFLELI 563          
BLAST of GT621910 vs. TrEMBL
Match: Q94B82_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana GN=T5C23.170 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.673e-19
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 2
Query:    2 RGRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            RGRRFL+SDKLQ+LF++IDI R VKP++YRLVRPYPR AFG  ES   L +LGLT+KQEALFLEL+
Sbjct:  325 RGRRFLKSDKLQTLFNFIDIARVVKPNTYRLVRPYPRHAFGDGESESTLNDLGLTSKQEALFLELI 390          
BLAST of GT621910 vs. TrEMBL
Match: B9GKN0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1067013 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.673e-19
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 2
Query:    2 RGRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            RGRRFL+SD LQ+ FD+IDIGR VKP +YRLVRPYPRRAF   ESA+ L ELGL +KQEALFLE +
Sbjct:  521 RGRRFLKSDNLQAFFDFIDIGRVVKPGTYRLVRPYPRRAFSDGESALTLNELGLASKQEALFLESI 586          
BLAST of GT621910 vs. TrEMBL
Match: B9GW72_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_554317 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.186e-19
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 2
Query:    2 RGRRFLRSDKLQSLFDYIDIGRQVKPSSYRL-VRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            RGRRFL+SDKL +LFD+IDIGR VKP +YRL VRPYPRRAF   E A+ L ELGLT+KQEALFLEL+
Sbjct:  523 RGRRFLKSDKLHALFDFIDIGRVVKPGTYRLQVRPYPRRAFSDGEGALTLNELGLTSKQEALFLELI 589          
BLAST of GT621910 vs. TrEMBL
Match: Q9C5G7_ARATH (Putative uncharacterized protein At4g23040 OS=Arabidopsis thaliana GN=At4g23040 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.869e-19
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 2
Query:    5 GRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            GRRF +SDKLQSLFD+IDI R VKP++YRLVRPYPRRAFG  E +  L ++GLT+KQEALFLEL+
Sbjct:  461 GRRFFKSDKLQSLFDFIDICRVVKPNTYRLVRPYPRRAFGDGECSSTLNDIGLTSKQEALFLELI 525          
BLAST of GT621910 vs. TrEMBL
Match: O82753_ARATH (Putative uncharacterized protein AT4g23040 OS=Arabidopsis thaliana GN=F7H19.230 PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.869e-19
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 2
Query:    5 GRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            GRRF +SDKLQSLFD+IDI R VKP++YRLVRPYPRRAFG  E +  L ++GLT+KQEALFLEL+
Sbjct:  513 GRRFFKSDKLQSLFDFIDICRVVKPNTYRLVRPYPRRAFGDGECSSTLNDIGLTSKQEALFLELI 577          
BLAST of GT621910 vs. TrEMBL
Match: D7MDX6_ARALY (UBX domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_492561 PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.305e-19
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 2
Query:    5 GRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            GRRFL+SDKLQSLFD+IDI R VKP++YRLVRPYPR AFG  E +  L ++GLT+KQEALFLEL+
Sbjct:  468 GRRFLKSDKLQSLFDFIDICRVVKPNTYRLVRPYPRHAFGDGECSSTLNDVGLTSKQEALFLELI 532          
BLAST of GT621910 vs. TAIR peptide
Match: AT4G11740.1 (| Symbols: SAY1 | Ubiquitin-like superfamily protein | chr4:7071955-7075256 FORWARD LENGTH=564)

HSP 1 Score: 98.9821 bits (245), Expect = 1.003e-21
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 2
Query:    2 RGRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            RGRRFL+SDKLQ+LF++IDI R VKP++YRLVRPYPR AFG  ES   L +LGLT+KQEALFLEL+
Sbjct:  499 RGRRFLKSDKLQTLFNFIDIARVVKPNTYRLVRPYPRHAFGDGESESTLNDLGLTSKQEALFLELI 564          
BLAST of GT621910 vs. TAIR peptide
Match: AT4G23040.1 (| Symbols: | Ubiquitin-like superfamily protein | chr4:12075672-12078622 REVERSE LENGTH=525)

HSP 1 Score: 97.4413 bits (241), Expect = 2.917e-21
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 2
Query:    5 GRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            GRRF +SDKLQSLFD+IDI R VKP++YRLVRPYPRRAFG  E +  L ++GLT+KQEALFLEL+
Sbjct:  461 GRRFFKSDKLQSLFDFIDICRVVKPNTYRLVRPYPRRAFGDGECSSTLNDIGLTSKQEALFLELI 525          
BLAST of GT621910 vs. TAIR peptide
Match: AT4G00752.1 (| Symbols: | UBX domain-containing protein | chr4:317771-320793 REVERSE LENGTH=469)

HSP 1 Score: 94.3597 bits (233), Expect = 2.470e-20
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 2
Query:    5 GRRFLRSDKLQSLFDYIDIGRQVKPSSYRLVRPYPRRAFGVEESAVKLEELGLTNKQEALFLELV 199
            GRRFL+SDKL+ LFD+ID    VKP +YR+VRPYPRRAF +++ A+  EEL LTNKQEALFLEL+
Sbjct:  404 GRRFLKSDKLKYLFDFIDAAGLVKPGTYRVVRPYPRRAFSIQDGALTFEELSLTNKQEALFLELL 468          
The following BLAST results are available for this feature:
BLAST of GT621910 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7TW41_VITVI3.050e-2175.76Whole genome shotgun sequence of line PN40024, sca... [more]
B9IC59_POPTR6.794e-2173.85Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9P8U1_POPTR8.874e-2175.76Putative uncharacterized protein OS=Populus tricho... [more]
D7M082_ARALY4.404e-2074.24Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q94B82_ARATH1.673e-1972.73Putative uncharacterized protein OS=Arabidopsis th... [more]
B9GKN0_POPTR1.673e-1972.73Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9GW72_POPTR2.186e-1974.63Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q9C5G7_ARATH4.869e-1972.31Putative uncharacterized protein At4g23040 OS=Arab... [more]
O82753_ARATH4.869e-1972.31Putative uncharacterized protein AT4g23040 OS=Arab... [more]
D7MDX6_ARALY8.305e-1972.31UBX domain-containing protein OS=Arabidopsis lyrat... [more]
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BLAST of GT621910 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G11740.11.003e-2172.73| Symbols: SAY1 | Ubiquitin-like superfamily prote... [more]
AT4G23040.12.917e-2172.31| Symbols: | Ubiquitin-like superfamily protein |... [more]
AT4G00752.12.470e-2067.69| Symbols: | UBX domain-containing protein | chr4... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 38..54
score
NoneNo IPR availableGENE3D3.10.20.90no descriptioncoord: 3..64
score: 7.4
NoneNo IPR availablePANTHERPTHR23322FAS-ASSOCIATED PROTEINcoord: 1..66
score: 1.2
NoneNo IPR availablePANTHERPTHR23322:SF3ARA4-INTERACTING PROTEINcoord: 1..66
score: 1.2
NoneNo IPR availableSUPERFAMILY54236Ubiquitin-likecoord: 3..65
score: 4.6
IPR001012UBXPFAMPF00789UBXcoord: 3..64
score: 4.2
IPR001012UBXPROFILEPS50033UBXcoord: 1..62
score: 10

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT621910 ID=GT621910; Name=GT621910; organism=Lens culinaris; type=EST; length=422bp
CCGGGGACGCCGATTCCTAAGATCGGATAAGCTCCAGTCTCTTTTCGACT
ACATCGATATTGGTAGACAGGTGAAACCAAGCAGTTACAGACTGGTGAGA
CCATATCCTAGGCGTGCCTTTGGTGTTGAAGAAAGTGCTGTGAAATTGGA
AGAGCTTGGCCTAACCAACAAGCAAGAAGCTTTGTTTTTGGAGTTAGTCT
GATGCCTTGAGCAGAAAGCTAGAAGATAAACTTTTGAAGTCTTTAGGTAG
TTTTTAAAGAAAATGAACCAATACACAGAAGAACTTTGCATTTTAATCTG
GTTTTTTTGTGCTATATGATGTTATTTATGAATTTAAAGATTTACAATGA
CTGTGTGCTTTTACTTCTGATAAACATATTCTTGGAGAATGAATTGAAGG
AGATTATACAATAGTCTGCAAT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR001012UBX_dom