GT627321

EST Overview


Name	GT627321
Unique Name	GT627321
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	321

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

[Close]

BLAST of GT627321 vs. TrEMBL
Match: B7FGK9_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.215e-14
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            MVKYS+EPDNPTKSTKARGADLRVHFKNTRETAF+IRK+PL
Sbjct:    1 MVKYSKEPDNPTKSTKARGADLRVHFKNTRETAFAIRKLPL 41

[Close]

BLAST of GT627321 vs. TrEMBL
Match: C6SXK1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.073e-14
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLL 133
            MVKYSREPDNPTKS KARGADLRVHFKNTRETAF+IRK+PL+
Sbjct:    1 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLV 42

[Close]

BLAST of GT627321 vs. TrEMBL
Match: C6SWL4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.073e-14
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLL 133
            MVKYSREPDNPTKS KARGADLRVHFKNTRETAF+IRK+PL+
Sbjct:    1 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLV 42

[Close]

BLAST of GT627321 vs. TrEMBL
Match: C6SWG9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.073e-14
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLL 133
            MVKYSREPDNPTKS KARGADLRVHFKNTRETAF+IRK+PL+
Sbjct:    1 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLV 42

[Close]

BLAST of GT627321 vs. TrEMBL
Match: A9PCW9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_729010 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.708e-14
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            MVKYSREPDNPTKS KARG+DLRVHFKNTRETAFSIRK+PL
Sbjct:    1 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFSIRKLPL 41

[Close]

BLAST of GT627321 vs. TrEMBL
Match: A9PJV5_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.879e-14
Identity = 36/42 (85.71%), Postives = 41/42 (97.62%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLL 133
            MVKYSREPDNPTKS KARG+DLRVHFKNTRETAF++RK+PL+
Sbjct:    1 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFALRKLPLV 42

[Close]

BLAST of GT627321 vs. TrEMBL
Match: A9PBU5_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.879e-14
Identity = 36/42 (85.71%), Postives = 41/42 (97.62%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLL 133
            MVKYSREPDNPTKS KARG+DLRVHFKNTRETAF++RK+PL+
Sbjct:    1 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFALRKLPLV 42

[Close]

BLAST of GT627321 vs. TrEMBL
Match: A9PA96_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.879e-14
Identity = 36/42 (85.71%), Postives = 41/42 (97.62%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLL 133
            MVKYSREPDNPTKS KARG+DLRVHFKNTRETAF++RK+PL+
Sbjct:    1 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFALRKLPLV 42

[Close]

BLAST of GT627321 vs. TrEMBL
Match: B9IF99_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_733603 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.029e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            MVKYSREPDN TKS KARG+DLRVHFKNTRETAFSIRKMPL
Sbjct:    1 MVKYSREPDNQTKSCKARGSDLRVHFKNTRETAFSIRKMPL 41

[Close]

BLAST of GT627321 vs. TrEMBL
Match: A9PE02_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.029e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            MVKYSREPDN TKS KARG+DLRVHFKNTRETAFSIRKMPL
Sbjct:    1 MVKYSREPDNQTKSCKARGSDLRVHFKNTRETAFSIRKMPL 41

[Close]

BLAST of GT627321 vs. SwissProt
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.736e-13
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLL 133
            MVKYS+EPDN TKS KARG+DLRVHFKNTRETA +IRK+PL+
Sbjct:    1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLI 42

[Close]

BLAST of GT627321 vs. SwissProt
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.573e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            MVKYS+EPDN TKS KARGADLRVHFKNTRETA +IRK+PL
Sbjct:    1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPL 41

[Close]

BLAST of GT627321 vs. SwissProt
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.094e-13
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            MVKYS+EP NPTKS KA G DLRVHFKNTRETAF++RK+PL
Sbjct:    1 MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPL 41

[Close]

BLAST of GT627321 vs. SwissProt
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.094e-13
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            MVKYSR+P NPTKS KA G DLRVHFKNTRETAF++R+MPL
Sbjct:    1 MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPL 41

[Close]

BLAST of GT627321 vs. SwissProt
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.358e-12
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            MVKYS +P NPTKS KA G DLRVHFKNTRETAF++RKMPL
Sbjct:    1 MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPL 41

[Close]

BLAST of GT627321 vs. SwissProt
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.800e-12
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            M +YSREPDNP KS KARG++LRVHFKNT ETA +IRKMPL
Sbjct:    1 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPL 41

[Close]

BLAST of GT627321 vs. SwissProt
Match: RL17_AEDAL (60S ribosomal protein L17 OS=Aedes albopictus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.344e-11
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            M +Y++EPDNP KS KARG++LRVHFKNTRETA +I++MPL
Sbjct:    1 MGRYAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPL 41

[Close]

BLAST of GT627321 vs. SwissProt
Match: RL17_AEDAE (60S ribosomal protein L17 OS=Aedes aegypti GN=RpL17 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.344e-11
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            M +Y++EPDNP KS KARG++LRVHFKNTRETA +I++MPL
Sbjct:    1 MGRYAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPL 41

[Close]

BLAST of GT627321 vs. SwissProt
Match: RL17_LONON (60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.704e-11
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            M +YSR+P+NP KS KARG++LRVHFKNT ETA +IRKMPL
Sbjct:    1 MGRYSRDPENPAKSCKARGSNLRVHFKNTYETAMAIRKMPL 41

[Close]

BLAST of GT627321 vs. SwissProt
Match: RL17_DIACI (60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.450e-11
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            M +YS+EP NPTKS KARG++LRVHFKNTRETA +I KMPL
Sbjct:    1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPL 41

[Close]

BLAST of GT627321 vs. TAIR peptide
Match: AT1G67430.2 (| Symbols: | Ribosomal protein L22p/L17e family protein | chr1:25262209-25263627 FORWARD LENGTH=131)

HSP 1 Score: 73.9442 bits (180), Expect = 2.163e-14
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLL 133
            MVKYS+EPDN TKS KARG+DLRVHFKNTRETA +IRK+PL+
Sbjct:    1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLI 42

[Close]

BLAST of GT627321 vs. TAIR peptide
Match: AT1G67430.1 (| Symbols: | Ribosomal protein L22p/L17e family protein | chr1:25262209-25263627 FORWARD LENGTH=175)

HSP 1 Score: 73.9442 bits (180), Expect = 2.163e-14
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLL 133
            MVKYS+EPDN TKS KARG+DLRVHFKNTRETA +IRK+PL+
Sbjct:    1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLI 42

[Close]

BLAST of GT627321 vs. TAIR peptide
Match: AT1G27400.1 (| Symbols: | Ribosomal protein L22p/L17e family protein | chr1:9515230-9516725 FORWARD LENGTH=176)

HSP 1 Score: 73.559 bits (179), Expect = 2.825e-14
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 2

Query:    8 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPL 130
            MVKYS+EPDN TKS KARGADLRVHFKNTRETA +IRK+PL
Sbjct:    1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPL 41

The following BLAST results are available for this feature:

BLAST of GT627321 vs. TrEMBL
BLAST of GT627321 vs. SwissProt
BLAST of GT627321 vs. TAIR peptide

BLAST of GT627321 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FGK9_MEDTR	1.215e-14	92.68	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6SXK1_SOYBN	2.073e-14	90.48	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SWL4_SOYBN	2.073e-14	90.48	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SWG9_SOYBN	2.073e-14	90.48	Putative uncharacterized protein OS=Glycine max PE...	[more]
A9PCW9_POPTR	2.708e-14	92.68	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PJV5_9ROSI	7.879e-14	85.71	Putative uncharacterized protein OS=Populus tricho...	[more]
A9PBU5_POPTR	7.879e-14	85.71	Putative uncharacterized protein OS=Populus tricho...	[more]
A9PA96_POPTR	7.879e-14	85.71	Putative uncharacterized protein OS=Populus tricho...	[more]
B9IF99_POPTR	1.029e-13	92.68	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PE02_POPTR	1.029e-13	92.68	Putative uncharacterized protein OS=Populus tricho...	[more]

BLAST of GT627321 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RL172_ARATH	2.736e-13	80.95	60S ribosomal protein L17-2 OS=Arabidopsis thalian...	[more]
RL171_ARATH	3.573e-13	85.37	60S ribosomal protein L17-1 OS=Arabidopsis thalian...	[more]
RL17_MAIZE	6.094e-13	80.49	60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=...	[more]
RL172_HORVU	6.094e-13	80.49	60S ribosomal protein L17-2 OS=Hordeum vulgare PE=...	[more]
RL171_HORVU	1.358e-12	80.49	60S ribosomal protein L17-1 OS=Hordeum vulgare PE=...	[more]
RL17_BOMMO	8.800e-12	78.05	60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ...	[more]
RL17_AEDAL	3.344e-11	70.73	60S ribosomal protein L17 OS=Aedes albopictus GN=R...	[more]
RL17_AEDAE	3.344e-11	70.73	60S ribosomal protein L17 OS=Aedes aegypti GN=RpL1...	[more]
RL17_LONON	5.704e-11	73.17	60S ribosomal protein L17 OS=Lonomia obliqua GN=Rp...	[more]
RL17_DIACI	7.450e-11	75.61	60S ribosomal protein L17 OS=Diaphorina citri GN=R...	[more]

BLAST of GT627321 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G67430.2	2.163e-14	80.95	\| Symbols: \| Ribosomal protein L22p/L17e family p...	[more]
AT1G67430.1	2.163e-14	80.95	\| Symbols: \| Ribosomal protein L22p/L17e family p...	[more]
AT1G27400.1	2.825e-14	85.37	\| Symbols: \| Ribosomal protein L22p/L17e family p...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 46..58 score
None	No IPR available	SEG	seg	seg	coord: 53..62 score

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT627321 ID=GT627321; Name=GT627321; organism=Lens culinaris; type=EST; length=321bp
CGTCGTCATGGTTAAGTACTCAAGAGAGCCCGATAATCCCACCAAGTCCA
CCAAGGCACGAGGTGCAGACCTTAGAGTTCATTTCAAGAACACTAGGGAA
ACAGCGTTTTCCATCAGGAAGATGCCCTTGCTGGCCTAATGTGAATGTGC
TCCTCATTTGTGTACTATTAGTGATCCATATTTGTAAGTTAATGTAATTA
ATTAATGGAGTTCATTCAATCCCCTGTCTATTTTGAACTGTATGTAAATT
ATTTCATTTAGTTGTATCTTCTACACTAATAGCTCTTGGCTTAGTTTTGA
AATAGTGGATGTATGAAATTG

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