GT626301

EST Overview
NameGT626301
Unique NameGT626301
TypeEST
OrganismLens culinaris (lentil)
Sequence length575
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Homology
BLAST of GT626301 vs. TrEMBL
Match: B7FM90_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.673e-32
Identity = 75/106 (70.75%), Postives = 80/106 (75.47%), Query Frame = 3
Query:   42 VVGSSVIGSKSRNNNKGRTVKFITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVMXXXXXXXXXXXXXXXXXXTCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            VVGSSVIG+KSR+  KG  VKFIT LNSYNGLKAQ STV SLGVP+C++QAFA VM                  TCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI
Sbjct:   14 VVGSSVIGTKSRSTKKGNNVKFITGLNSYNGLKAQNSTVTSLGVPMCTEQAFAKVMSSLKYPSNGGRRGGAGSSTCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 119          
BLAST of GT626301 vs. TrEMBL
Match: C6T146_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.569e-18
Identity = 58/104 (55.77%), Postives = 66/104 (63.46%), Query Frame = 3
Query:   51 SSVIGSKSRNNNKGRTVKFITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVMXXXXXXXXXXXXXXXXXX-TCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            SSV  +K R  N    V FI  LNS+ GLKAQ S V SLG+PVC++Q FA V+                   TCNAAGEIFQIAAIMNGL LVGVA+GFVLLR+
Sbjct:   18 SSVASTKRRERN----VHFIRGLNSFGGLKAQNS-VTSLGLPVCTEQCFAKVVSSLKYQSSSKGRGGGAASSTCNAAGEIFQIAAIMNGLVLVGVAIGFVLLRV 116          
BLAST of GT626301 vs. TrEMBL
Match: O48717_ARATH (At2g26500 OS=Arabidopsis thaliana GN=At2g26500 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.661e-18
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 3
Query:   54 SVIGSKSRNNNKGRTVK--FITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVMXXXXXXXXXXXXXXXXXXTCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            S I SKS    K   +K  +IT LNSY GLKAQ + V S+G P+C++Q FANV+                  TCNA GEIF+IAAIMN LTLVGVAVGFVLLRI
Sbjct:   15 SGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQCFANVVMSLKGRRGNGGALST---TCNAVGEIFKIAAIMNALTLVGVAVGFVLLRI 115          
BLAST of GT626301 vs. TrEMBL
Match: D7LDJ9_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_901414 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.661e-18
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 3
Query:   54 SVIGSKSRNNNKGRTVK--FITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVMXXXXXXXXXXXXXXXXXXTCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            S I SKS    K   +K  +IT LNSY GLKAQ + V S+G P+C++Q FANV+                  TCNA GEIF+IAAIMN LTLVGVAVGFVLLRI
Sbjct:   80 SGIVSKSGQTQKKTEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQCFANVVVSLKGRRGNGGALST---TCNAVGEIFKIAAIMNALTLVGVAVGFVLLRI 180          
BLAST of GT626301 vs. TrEMBL
Match: Q9SZY6_ARATH (Cytochrome b6f complex subunit OS=Arabidopsis thaliana GN=petM PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.038e-17
Identity = 51/87 (58.62%), Postives = 59/87 (67.82%), Query Frame = 3
Query:   99 VKFITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVMXXXXXXXXXXXXXXXXXXTCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            V +IT LNSY GLKAQ + V S+G P+C++Q FANV+                  TCNA GEIF+IAAIMN LTLVGVAVGFVLLRI
Sbjct:    3 VSYITGLNSYGGLKAQNNKVVSMGSPLCTEQCFANVVMSLKGRRGNGGALST---TCNAVGEIFKIAAIMNALTLVGVAVGFVLLRI 86          
BLAST of GT626301 vs. TrEMBL
Match: A5AN62_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027615 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.958e-16
Identity = 56/105 (53.33%), Postives = 70/105 (66.67%), Query Frame = 3
Query:   51 SSVIGSKSRNNNKGRT-VKFITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVMXXXXXXXXXXXXXXXXXX-TCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            ++ I    R + + +T V FI  LNS++GLKA  S VASLG+PVC++Q+FA ++X    X             TCNA GEIF+IAAIMNGL LVGVAVGFVLLRI
Sbjct:   15 AAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNS-VASLGLPVCTEQSFAKIVXSLKSXSQGKGRGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRI 118          
BLAST of GT626301 vs. TrEMBL
Match: C6SYI4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.340e-16
Identity = 54/109 (49.54%), Postives = 64/109 (58.72%), Query Frame = 3
Query:   42 VVGSSVIGSKSRNNNKGRTVKFITRLNSYNGLKAQKSTVASLGVPVCSQQAFANV---MXXXXXXXXXXXXXXXXXXTCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            V  S  +GS+       R V F   LNS+ GLKAQ + V  LG+PVC++Q FA V   +                  TCNAAGEIFQIAAIMNGL LVGVA+GFVLLR+
Sbjct:   15 VAASPSVGSRRSGK---RNVNFTRGLNSFGGLKAQNN-VTLLGLPVCTEQCFAKVVSSLKYPSSSSRKGRGGGAAFSTCNAAGEIFQIAAIMNGLVLVGVAIGFVLLRV 119          
BLAST of GT626301 vs. TrEMBL
Match: B9NH21_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_273213 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.964e-14
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 3
Query:   99 VKFITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVMXXXXXXXXXXXXXXXXXX-TCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            V +IT L+S+ GLKA  + V+SLG+PVC++Q+FA V+                   TC+  GEIF+IAAIMNGL LVGVAVGFVLLR+
Sbjct:    3 VNYITGLDSFGGLKAHNN-VSSLGLPVCTEQSFAKVVSSLRAPSKGKGRSGGALSSTCSDVGEIFRIAAIMNGLVLVGVAVGFVLLRV 89          
BLAST of GT626301 vs. TrEMBL
Match: Q9M5M4_EUPES (Putative uncharacterized protein OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.188e-13
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 3
Query:   42 VVGSSVIGSKSRNNNKGRTVKFITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVMXXXXXXXXXXXXXXXXXX--TCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            +  +SV+    ++  K   + +I  LNSY GLKA  +TVASLG+PV ++Q FANV+                     C+  GEI QIAA +NGLTL+GVAVGFVLLRI
Sbjct:   13 ISAASVVTIGHKSQKKESKIVYIRGLNSYGGLKAH-NTVASLGMPVSTEQGFANVISSLKTSSSNGKGKSGGALGSKCSKIGEIVQIAATLNGLTLLGVAVGFVLLRI 119          
BLAST of GT626301 vs. TrEMBL
Match: A9PFI7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_827935 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.188e-13
Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 3
Query:   42 VVGSSVIGSKSRNNNKGRTVKFITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVMXXXXXXXXXXXXXXXXXX-TCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            +V S+V   K +  N    V +IT LNS+ GLKA  S V+SLG+ V S+Q+FA ++                   TC+  GEIF+IAA+MNGL LVGVAVGFVLLRI
Sbjct:   13 LVASAVSSPKRKQTN----VNYITGLNSFGGLKAHNS-VSSLGLSVGSEQSFAKIVSSLKAPSKGKGGSGGALSSTCSNVGEIFRIAAVMNGLVLVGVAVGFVLLRI 114          
BLAST of GT626301 vs. SwissProt
Match: PETM_SPIOL (Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea GN=petM PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 5.039e-7
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 3
Query:  270 NAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            NAA EIF+IAA+MNGLTLVGVA+GFVLLRI
Sbjct:    1 NAAAEIFRIAAVMNGLTLVGVAIGFVLLRI 30          
BLAST of GT626301 vs. TAIR peptide
Match: AT2G26500.1 (| Symbols: | cytochrome b6f complex subunit (petM), putative | chr2:11270370-11270747 FORWARD LENGTH=125)

HSP 1 Score: 94.7449 bits (234), Expect = 3.574e-20
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 3
Query:   54 SVIGSKSRNNNKGRTVK--FITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVMXXXXXXXXXXXXXXXXXXTCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            S I SKS    K   +K  +IT LNSY GLKAQ + V S+G P+C++Q FANV+                  TCNA GEIF+IAAIMN LTLVGVAVGFVLLRI
Sbjct:   15 SGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQCFANVVMSLKGRRGNGGALST---TCNAVGEIFKIAAIMNALTLVGVAVGFVLLRI 115          
BLAST of GT626301 vs. TAIR peptide
Match: AT2G26500.2 (| Symbols: | cytochrome b6f complex subunit (petM), putative | chr2:11270370-11270747 FORWARD LENGTH=125)

HSP 1 Score: 94.7449 bits (234), Expect = 3.574e-20
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 3
Query:   54 SVIGSKSRNNNKGRTVK--FITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVMXXXXXXXXXXXXXXXXXXTCNAAGEIFQIAAIMNGLTLVGVAVGFVLLRI 359
            S I SKS    K   +K  +IT LNSY GLKAQ + V S+G P+C++Q FANV+                  TCNA GEIF+IAAIMN LTLVGVAVGFVLLRI
Sbjct:   15 SGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQCFANVVMSLKGRRGNGGALST---TCNAVGEIFKIAAIMNALTLVGVAVGFVLLRI 115          
BLAST of GT626301 vs. TAIR peptide
Match: AT2G26500.3 (| Symbols: | cytochrome b6f complex subunit (petM), putative | chr2:11270370-11270747 FORWARD LENGTH=93)

HSP 1 Score: 51.6026 bits (122), Expect = 3.469e-7
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 3
Query:   54 SVIGSKSRNNNKGRTVK--FITRLNSYNGLKAQKSTVASLGVPVCSQQAFANVM 209
            S I SKS    K   +K  +IT LNSY GLKAQ + V S+G P+C++Q FANV+
Sbjct:   15 SGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQCFANVV 68          
The following BLAST results are available for this feature:
BLAST of GT626301 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B7FM90_MEDTR9.673e-3270.75Putative uncharacterized protein OS=Medicago trunc... [more]
C6T146_SOYBN3.569e-1855.77Putative uncharacterized protein OS=Glycine max PE... [more]
O48717_ARATH4.661e-1854.81At2g26500 OS=Arabidopsis thaliana GN=At2g26500 PE=... [more]
D7LDJ9_ARALY4.661e-1854.81Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q9SZY6_ARATH1.038e-1758.62Cytochrome b6f complex subunit OS=Arabidopsis thal... [more]
A5AN62_VITVI1.958e-1653.33Putative uncharacterized protein OS=Vitis vinifera... [more]
C6SYI4_SOYBN3.340e-1649.54Putative uncharacterized protein OS=Glycine max PE... [more]
B9NH21_POPTR6.964e-1452.27Predicted protein (Fragment) OS=Populus trichocarp... [more]
Q9M5M4_EUPES1.188e-1345.37Putative uncharacterized protein OS=Euphorbia esul... [more]
A9PFI7_POPTR1.188e-1347.66Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of GT626301 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
PETM_SPIOL5.039e-786.67Cytochrome b6-f complex subunit 7 (Fragment) OS=Sp... [more]
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BLAST of GT626301 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G26500.13.574e-2054.81| Symbols: | cytochrome b6f complex subunit (petM... [more]
AT2G26500.23.574e-2054.81| Symbols: | cytochrome b6f complex subunit (petM... [more]
AT2G26500.33.469e-751.85| Symbols: | cytochrome b6f complex subunit (petM... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012595PetM of cytochrome b6/f complex subunit 7HAMAPMF_00396Cytb6_f_PetMcoord: 91..122
score: 10
IPR012595PetM of cytochrome b6/f complex subunit 7PFAMPF08041PetMcoord: 93..119
score: 2.9
NoneNo IPR availableSEGsegsegcoord: 2..13
score: NAcoord: 70..87
score
NoneNo IPR availableSUPERFAMILY103441PetM subunit of the cytochrome b6f complexcoord: 91..124
score: 9.8

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT626301 ID=GT626301; Name=GT626301; organism=Lens culinaris; type=EST; length=575bp
AAATGGCCACAGCCTCAGCAGCAACTCCATCTACAATCACTGTTGTAGGA
AGCTCAGTCATCGGTTCCAAATCAAGGAACAACAACAAGGGTCGTACTGT
GAAGTTCATCACAAGACTCAATTCTTATAACGGATTGAAAGCTCAGAAAA
GCACTGTGGCATCACTAGGAGTTCCTGTTTGCAGTCAACAAGCTTTTGCA
AACGTGATGAGATCAATATCAAAGGGACGAAGAAGTGGCCGTGGTGGTGG
TGCTCTTTCTTCAACATGTAATGCTGCAGGTGAGATTTTTCAGATTGCTG
CTATTATGAATGGACTTACTCTTGTTGGTGTTGCTGTTGGGTTTGTTCTT
CTTCGAATTGAAGCTGCTGTTGAAGAAGCTGAGTAAGAGTTTTTATTATA
TGTATGTAATGAATGGAATGTAAGTTTGTTATATCAGTTTAATTCTTGAT
GTCATGTTGTAGAACTCAATTGTTAATGTTCTTGGAGGTATTTGAATCGT
ACCACTTGAATTTTTATTGAGATACATAAATTGTACACAATGCTGTTTGG
TTTTGTACATCAATATTGGTTGGGA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Cellular Component
TermDefinition
GO:0009512cytochrome b6f complex
Vocabulary: INTERPRO
TermDefinition
IPR012595PetM_cyt_b6/f_cplx_su7