GT627045

EST Overview
NameGT627045
Unique NameGT627045
TypeEST
OrganismLens culinaris (lentil)
Sequence length319
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
Homology
BLAST of GT627045 vs. TrEMBL
Match: Q9FE62_ARATH (AT5g08290 OS=Arabidopsis thaliana GN=F8L15_20 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.643e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct:  109 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 142          
BLAST of GT627045 vs. TrEMBL
Match: Q8LF46_ARATH (Putative thioredoxin-like U5 small ribonucleoprotein particle protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.643e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct:  109 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 142          
BLAST of GT627045 vs. TrEMBL
Match: D7M1A3_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_908777 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.643e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct:  109 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 142          
BLAST of GT627045 vs. TrEMBL
Match: B7FMH0_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.643e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct:  109 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 142          
BLAST of GT627045 vs. TrEMBL
Match: B7FF76_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.643e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct:  109 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 142          
BLAST of GT627045 vs. TrEMBL
Match: A9NPK8_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.643e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct:  109 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 142          
BLAST of GT627045 vs. TrEMBL
Match: Q8W376_ORYSA (Putative thioredoxin-like U5 small ribonucleoprotein particle protein OS=Oryza sativa GN=OSJNBa0029C15.2 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.146e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct:  109 KQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 142          
BLAST of GT627045 vs. TrEMBL
Match: Q7XJB7_SOYBN (Putative DIM-like protein (Fragment) OS=Glycine max GN=DIM PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.146e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct:  104 KQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 137          
BLAST of GT627045 vs. TrEMBL
Match: Q7X873_ORYSJ (Os07g0202450 protein OS=Oryza sativa subsp. japonica GN=Os07g0202450 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.146e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct:  109 KQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 142          
BLAST of GT627045 vs. TrEMBL
Match: Q1EP80_MUSAC (Spliceosomal U5 snRNP-specific 15 kDa protein, putative OS=Musa acuminata GN=MA4_54B05.16 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.146e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct:  158 KQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 191          
BLAST of GT627045 vs. SwissProt
Match: TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.501e-11
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQE +DIIETVYRGARKGRGLV++PKDYSTKYRY
Sbjct:  109 KQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142          
BLAST of GT627045 vs. SwissProt
Match: TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.501e-11
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQE +DIIETVYRGARKGRGLV++PKDYSTKYRY
Sbjct:  109 KQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142          
BLAST of GT627045 vs. SwissProt
Match: DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe GN=dim1 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 6.306e-10
Identity = 27/34 (79.41%), Postives = 33/34 (97.06%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQE IDIIET++RGARKG+GLVI+PKDYST++RY
Sbjct:  109 KQEMIDIIETIFRGARKGKGLVISPKDYSTRHRY 142          
BLAST of GT627045 vs. SwissProt
Match: TXN4A_DICDI (Thioredoxin-like protein 4A homolog OS=Dictyostelium discoideum GN=txnl4a PE=3 SV=4)

HSP 1 Score: 53.5286 bits (127), Expect = 3.826e-7
Identity = 22/34 (64.71%), Postives = 31/34 (91.18%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQ+ IDIIETVY+GARKG+GLV +P+D+S +Y++
Sbjct:  100 KQDMIDIIETVYKGARKGKGLVNSPRDFSPQYKF 133          
BLAST of GT627045 vs. TAIR peptide
Match: AT5G08290.1 (| Symbols: YLS8 | mRNA splicing factor, thioredoxin-like U5 snRNP | chr5:2666043-2666936 FORWARD LENGTH=142)

HSP 1 Score: 72.4034 bits (176), Expect = 6.294e-14
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 103
            KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Sbjct:  109 KQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY 142          
The following BLAST results are available for this feature:
BLAST of GT627045 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q9FE62_ARATH1.643e-11100.00AT5g08290 OS=Arabidopsis thaliana GN=F8L15_20 PE=2... [more]
Q8LF46_ARATH1.643e-11100.00Putative thioredoxin-like U5 small ribonucleoprote... [more]
D7M1A3_ARALY1.643e-11100.00Putative uncharacterized protein OS=Arabidopsis ly... [more]
B7FMH0_MEDTR1.643e-11100.00Putative uncharacterized protein OS=Medicago trunc... [more]
B7FF76_MEDTR1.643e-11100.00Putative uncharacterized protein OS=Medicago trunc... [more]
A9NPK8_PICSI1.643e-11100.00Putative uncharacterized protein OS=Picea sitchens... [more]
Q8W376_ORYSA2.146e-1197.06Putative thioredoxin-like U5 small ribonucleoprote... [more]
Q7XJB7_SOYBN2.146e-1197.06Putative DIM-like protein (Fragment) OS=Glycine ma... [more]
Q7X873_ORYSJ2.146e-1197.06Os07g0202450 protein OS=Oryza sativa subsp. japoni... [more]
Q1EP80_MUSAC2.146e-1197.06Spliceosomal U5 snRNP-specific 15 kDa protein, put... [more]
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BLAST of GT627045 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
TXN4A_MOUSE1.501e-1188.24Thioredoxin-like protein 4A OS=Mus musculus GN=Txn... [more]
TXN4A_HUMAN1.501e-1188.24Thioredoxin-like protein 4A OS=Homo sapiens GN=TXN... [more]
DIMI_SCHPO6.306e-1079.41Mitosis protein dim1 OS=Schizosaccharomyces pombe ... [more]
TXN4A_DICDI3.826e-764.71Thioredoxin-like protein 4A homolog OS=Dictyosteli... [more]
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BLAST of GT627045 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G08290.16.294e-14100.00| Symbols: YLS8 | mRNA splicing factor, thioredoxi... [more]
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Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT627045 ID=GT627045; Name=GT627045; organism=Lens culinaris; type=EST; length=319bp
CAAACAGGAGTTTATTGACATCATTGAGACGGTCTATAGAGGTGCGAGGA
AAGGACGTGGTCTTGTCATTGCCCCCAAAGATTACTCCACCAAGTACCGT
TACTAAATATATCAATCTCTCTCTCTACTGGGATATATGTATGTATGTTC
AACTCGATTTTCATTCTGGTCCAAAACTTACTTTATTTGGTTTACCCTTT
GTTAAGGATGTATATTGAACTATATCAGATTACGCATGTCATCTTAAACT
GTAACTGCTATGCTCTGTAACTGCTATGCCCAACATGTATTGGGGTTATT
TTAACCAAAGATTTTGTGA
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