GT619478

EST Overview
NameGT619478
Unique NameGT619478
TypeEST
OrganismLens culinaris (lentil)
Sequence length768
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT619478 vs. TrEMBL
Match: C6SXN1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.548e-57
Identity = 114/168 (67.86%), Postives = 125/168 (74.40%), Query Frame = 2
Query:  149 MGEFTIQISNDLVNKLVDDPVIXXXXXXXXXXXXXXXXXPPYNVAEKAEIAPAPAWPVQAPLFVPATLPVHPSQSELESIRSVLHESEKVLERLQKQEEQMLQEVTEKAKDLHEKEYKLPNPKPERCMAERLASLTCYKEHIKDPLKCAGFVNNFADCLRKLGPLGGK 652
            MGEFTIQISNDLVN+LVDD V                  P  N   K + A  P WPVQ+PLF+PATLPV P  SELE I+SVL ESE+VLERLQKQEE MLQEVT+KAKDLH+KEYKLPNPKPE CMAERLA+L+CYKEHIKDPLKCA  V  FADCLR+ G LG K
Sbjct:    1 MGEFTIQISNDLVNQLVDDAVPKKKTRKTRRKVARETEKPQSNETIKPDSAVTPGWPVQSPLFLPATLPVQPVHSELEGIQSVLQESERVLERLQKQEENMLQEVTQKAKDLHDKEYKLPNPKPEPCMAERLATLSCYKEHIKDPLKCASLVTGFADCLRRFGRLGDK 168          
BLAST of GT619478 vs. TrEMBL
Match: C6TIS3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 5.313e-55
Identity = 112/168 (66.67%), Postives = 123/168 (73.21%), Query Frame = 2
Query:  149 MGEFTIQISNDLVNKLVDDPVIXXXXXXXXXXXXXXXXXPPYNVAEKAEIAPAPAWPVQAPLFVPATLPVHPSQSELESIRSVLHESEKVLERLQKQEEQMLQEVTEKAKDLHEKEYKLPNPKPERCMAERLASLTCYKEHIKDPLKCAGFVNNFADCLRKLGPLGGK 652
            MGEFTIQISNDLVN+LVDD V                  P  N   K + A  P WPVQ+PLF+PATLPV P  SELE I+SVL ESE+VLERLQKQEE MLQEVT+KAKDLH+KEYKLPNPKPE CMAERLA+L+ YKE IKDPLKCA  V  FADCLR+ G LG K
Sbjct:    1 MGEFTIQISNDLVNQLVDDAVPKKKTRKTRRKVARETEKPQSNETIKPDSAVTPGWPVQSPLFLPATLPVQPVHSELEGIQSVLQESERVLERLQKQEENMLQEVTQKAKDLHDKEYKLPNPKPEPCMAERLATLSRYKERIKDPLKCASLVTGFADCLRRFGRLGDK 168          
BLAST of GT619478 vs. TrEMBL
Match: B9RBQ6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1679900 PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.753e-34
Identity = 79/168 (47.02%), Postives = 107/168 (63.69%), Query Frame = 2
Query:  149 MGEFTIQISNDLVNKLVDD-PVIXXXXXXXXXXXXXXXXXPPYNVAEKAE-----IAPAPAWPVQAPLFVPATLPVHPSQSELESIRSVLHESEKVLERLQKQEEQMLQEVTEKAKDLHEKEYKLPNPKPERCMAERLASLTCYKEHIKDPLKCAGFVNNFADCLRKL 634
            MG+F+IQIS DLVN+LV+D   +                     V EK +      AP+P WPVQ PLF P   P H + +EL++I++V+ ESEKVLE+LQKQEE M++EVTE+AKDL +KE+KLP  KP  C+A+  A  TCYKE+  D LKCA    ++ DC+R++
Sbjct:    1 MGDFSIQISPDLVNRLVNDGEKLKKKPRRTKPKIPRESARSQTKVNEKHDPEVHKTAPSPGWPVQPPLFFPVPPPAHSANTELDAIKAVIQESEKVLEKLQKQEESMVKEVTERAKDLRDKEFKLPYQKPMPCLADYDACRTCYKENGNDILKCAPLTRSYYDCVRRV 168          
BLAST of GT619478 vs. TrEMBL
Match: B9GVR8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_799878 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.837e-32
Identity = 70/170 (41.18%), Postives = 105/170 (61.76%), Query Frame = 2
Query:  149 MGEFTIQISNDLVNKLVDD---------PVIXXXXXXXXXXXXXXXXXPPYNVAEKAEIAPAPAWPVQAPLFVPATLPVHPSQSELESIRSVLHESEKVLERLQKQEEQMLQEVTEKAKDLHEKEYKLPNPKPERCMAERLASLTCYKEHIKDPLKCAGFVNNFADCLRK 631
            MG+F++QI+ +LVN+  +D           I                   ++ +E  +   +P WPVQ PL++P T PVHP+ +EL++IRSV+ ESE+VLE+ QKQE+ M+Q+VTE+AK+L +KE+KLPN KP  C+ +  A   CYKEH  D LKCA    ++ +C+R+
Sbjct:    1 MGDFSVQITPELVNRFANDGEKLKKKAKKTIPKTRRETPLLKAKVNEKQLHDDSETHKRIASPGWPVQPPLYLPITQPVHPANAELDAIRSVIQESERVLEKFQKQEDNMVQQVTERAKNLRDKEFKLPNQKPMPCLVDYNACRACYKEHADDILKCAPLTKSYYECVRR 170          
BLAST of GT619478 vs. TrEMBL
Match: B9P5Q9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_677333 PE=4 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.350e-31
Identity = 69/170 (40.59%), Postives = 104/170 (61.18%), Query Frame = 2
Query:  149 MGEFTIQISNDLVNKLVDD---------PVIXXXXXXXXXXXXXXXXXPPYNVAEKAEIAPAPAWPVQAPLFVPATLPVHPSQSELESIRSVLHESEKVLERLQKQEEQMLQEVTEKAKDLHEKEYKLPNPKPERCMAERLASLTCYKEHIKDPLKCAGFVNNFADCLRK 631
            MG+F++QI+ +LVN+  +D           I                   ++ +E  +   +P WPVQ PL++P T  VHP+ +EL++IRSV+ ESE+VLE+ QKQE+ M+Q+VTE+AK+L +KE+KLPN KP  C+ +  A   CYKEH  D LKCA    ++ +C+R+
Sbjct:    1 MGDFSVQITPELVNRFANDGEKLKKKAKKTIPKTRRETPLLKAKVNEKQLHDDSETHKRIASPGWPVQPPLYLPITQTVHPANAELDAIRSVIQESERVLEKFQKQEDNMVQQVTERAKNLCDKEFKLPNQKPMPCLVDYNACRACYKEHADDILKCAPLTKSYYECVRR 170          
BLAST of GT619478 vs. TrEMBL
Match: A9PDB8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_581213 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.916e-30
Identity = 71/170 (41.76%), Postives = 102/170 (60.00%), Query Frame = 2
Query:  149 MGEFTIQISNDLVNKLVDD-PVIXXXXXXXXXXXXXXXXXPPYNVAEKA--------EIAPAPAWPVQAPLFVPATLPVHPSQSELESIRSVLHESEKVLERLQKQEEQMLQEVTEKAKDLHEKEYKLPNPKPERCMAERLASLTCYKEHIKDPLKCAGFVNNFADCLRK 631
            MG+F+IQI+ +LVN+  +D   +                 P   V EK         +   +P WPVQ P+++P T PV P+ +EL+ IRSV+ ESE+VLE+L KQE+ M+Q+VTE+AKDL +KE+KLP  K   C+A+      CYKEH  D LKCA F  ++ +C+R+
Sbjct:    1 MGDFSIQITPELVNRFANDGEKLKKKTKKTKPKTQREPPLPKPKVNEKQLHDDSETRKRIASPGWPVQTPMYLPITQPVQPANAELDEIRSVIRESERVLEKLLKQEDNMVQKVTERAKDLRDKEFKLPYQKTMPCLADYDDCKACYKEHANDILKCAPFTKSYYECVRR 170          
BLAST of GT619478 vs. TrEMBL
Match: D7M105_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_490039 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.248e-29
Identity = 74/168 (44.05%), Postives = 102/168 (60.71%), Query Frame = 2
Query:  149 MGEFTIQISNDLVNKLVDDPVIXXXXXXXXXXXXXXXXXPPYNVAEKAEIA-------PAPAWPVQAPLFVPATLPVHPSQSELESIRSVLHESEKVLERLQKQEEQMLQEVTEKAKDLHEKEYKLPNPKPERCMAERLASLTCYKEHIKDPLKCAGFVNNFADCLRK 631
            MG+F+IQISN L+N+L +                      P + A++A+         PA   P+Q P F P   P   + +ELESI+SV+ ESEKVLE+L+ QE+ ++ EVTE+AKDL EKE+K+P PKP  C +   A + CYKE+I DPLKC+GFV +F DC R+
Sbjct:    1 MGDFSIQISNKLINQLAEG-----NEQPKRRAKKTKPKVSPQSKADQAKTRLDAEKPNPAAELPMQPPFFFPIP-PQAAASTELESIKSVVKESEKVLEKLELQEKNIVHEVTERAKDLREKEFKIPEPKPMPCSSYHEAWMKCYKENIGDPLKCSGFVKSFQDCARR 162          
BLAST of GT619478 vs. TrEMBL
Match: Q9STH7_ARATH (AT4g12340/T4C9_180 OS=Arabidopsis thaliana GN=T4C9.180 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.936e-29
Identity = 70/161 (43.48%), Postives = 99/161 (61.49%), Query Frame = 2
Query:  149 MGEFTIQISNDLVNKLVDDPVIXXXXXXXXXXXXXXXXXPPYNVAEKAEIAPAPAWPVQAPLFVPATLPVHPSQSELESIRSVLHESEKVLERLQKQEEQMLQEVTEKAKDLHEKEYKLPNPKPERCMAERLASLTCYKEHIKDPLKCAGFVNNFADCLRK 631
            MG+F+IQIS+ L+N+L +                        N  E+ +  P    P+Q P F P   P   + +ELESI+SV+ ESEKVLE+L+ QE+ +++EVTE+AKDL EKE+K+P PKP  C ++  A + CYKE+I  PLKC+GFV +F DC R+
Sbjct:    1 MGDFSIQISSKLINQLAEGNDQPKRRAKKTKPKVSPQSKQKTNQDEEKKPNPVAELPMQPPFFFPIP-PQGAASTELESIKSVVKESEKVLEKLELQEKNIVREVTERAKDLREKEFKIPEPKPMPCSSDHEAWMKCYKENIGSPLKCSGFVKSFQDCARR 160          
BLAST of GT619478 vs. TrEMBL
Match: A5C171_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044224 PE=4 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.326e-26
Identity = 73/159 (45.91%), Postives = 96/159 (60.38%), Query Frame = 2
Query:  149 MGE-FTIQISNDLVNKLVDD------PVIXXXXXXXXXXXXXXXXXPPYNVAEKAEI---APAPAWPVQAPLFVPATLPVHPSQSELESIRSVLHESEKVLERLQKQEEQMLQEVTEKAKDLHEKEYKLPNPKPERCMAERLASLTCYKEHIKDPLKCA 595
            MGE FTIQIS+ L+N+L D                           P   V + +E      A  WP Q+ L++P + P  P+  EL++IRSVL +SE+VLERL+ QEE M+QEVT++AKDLH+KE+KLP  KP  C+AER A L CYKE++ D LKCA
Sbjct:    1 MGEPFTIQISSKLINQLADGGEKLKKKTKKPRQKLPGGRLQSQTKVPEKQVFDDSETRKGTAAAGWPPQSLLYMPVSTP-QPAIRELDAIRSVLQDSERVLERLKTQEEHMVQEVTQRAKDLHDKEFKLPYQKPIPCLAERDACLECYKENVNDALKCA 158          
BLAST of GT619478 vs. TrEMBL
Match: D7U6S5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_555.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00007420001 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.572e-25
Identity = 56/89 (62.92%), Postives = 73/89 (82.02%), Query Frame = 2
Query:  365 SQSELESIRSVLHESEKVLERLQKQEEQMLQEVTEKAKDLHEKEYKLPNPKPERCMAERLASLTCYKEHIKDPLKCAGFVNNFADCLRK 631
            SQ++L++IRSVL +SE+VLERL+ QEE M+QEVT++AKDLH+KE+KLP  KP  C+AER A L CYKE++ D LKCA  V +FADC R+
Sbjct:   42 SQTKLDAIRSVLQDSERVLERLKTQEEHMVQEVTQRAKDLHDKEFKLPYQKPIPCLAERDACLECYKENVNDALKCANVVRSFADCARR 130          
BLAST of GT619478 vs. TAIR peptide
Match: AT4G12340.1 (| Symbols: | copper ion binding | chr4:7321492-7322004 REVERSE LENGTH=170)

HSP 1 Score: 132.88 bits (333), Expect = 1.918e-31
Identity = 70/161 (43.48%), Postives = 99/161 (61.49%), Query Frame = 2
Query:  149 MGEFTIQISNDLVNKLVDDPVIXXXXXXXXXXXXXXXXXPPYNVAEKAEIAPAPAWPVQAPLFVPATLPVHPSQSELESIRSVLHESEKVLERLQKQEEQMLQEVTEKAKDLHEKEYKLPNPKPERCMAERLASLTCYKEHIKDPLKCAGFVNNFADCLRK 631
            MG+F+IQIS+ L+N+L +                        N  E+ +  P    P+Q P F P   P   + +ELESI+SV+ ESEKVLE+L+ QE+ +++EVTE+AKDL EKE+K+P PKP  C ++  A + CYKE+I  PLKC+GFV +F DC R+
Sbjct:    1 MGDFSIQISSKLINQLAEGNDQPKRRAKKTKPKVSPQSKQKTNQDEEKKPNPVAELPMQPPFFFPIP-PQGAASTELESIKSVVKESEKVLEKLELQEKNIVREVTERAKDLREKEFKIPEPKPMPCSSDHEAWMKCYKENIGSPLKCSGFVKSFQDCARR 160          
The following BLAST results are available for this feature:
BLAST of GT619478 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6SXN1_SOYBN2.548e-5767.86Putative uncharacterized protein OS=Glycine max PE... [more]
C6TIS3_SOYBN5.313e-5566.67Putative uncharacterized protein OS=Glycine max PE... [more]
B9RBQ6_RICCO6.753e-3447.02Putative uncharacterized protein OS=Ricinus commun... [more]
B9GVR8_POPTR2.837e-3241.18Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9P5Q9_POPTR5.350e-3140.59Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PDB8_POPTR5.916e-3041.76Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7M105_ARALY2.248e-2944.05Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q9STH7_ARATH2.936e-2943.48AT4g12340/T4C9_180 OS=Arabidopsis thaliana GN=T4C9... [more]
A5C171_VITVI2.326e-2645.91Putative uncharacterized protein OS=Vitis vinifera... [more]
D7U6S5_VITVI2.572e-2562.92Whole genome shotgun sequence of line PN40024, sca... [more]
back to top
BLAST of GT619478 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G12340.11.918e-3143.48| Symbols: | copper ion binding | chr4:7321492-73... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 28..44
score
NoneNo IPR availableSEGsegsegcoord: 13..24
score
NoneNo IPR availableSEGsegsegcoord: 66..76
score
NoneNo IPR availableSEGsegsegcoord: 25..47
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT619478 ID=GT619478; Name=GT619478; organism=Lens culinaris; type=EST; length=768bp
CAGGAGCTGAAGCTTTGCCCTTGTATCAGATAGAATTGGAGTCGCACTGA
TCTCAACGCAGGCGGAGTTCGGCGTCGTGGAAGAAAGACAGTCGGAAGCA
GCGGAAAAGCTTTTCAAGGAGTTACCATATTGATATCTTTATAGCATTAT
GGGTGAATTCACAATTCAGATCAGCAATGACCTTGTTAACAAGCTTGTTG
ATGATCCAGTGATAAAGAAGAAAACTAGAAGGGTCAAACGTAAGGTGGCA
AAAGAAACTGAAAAGCCCCCATATAATGTAGCTGAAAAAGCCGAGATTGC
ACCTGCTCCAGCATGGCCAGTGCAGGCCCCTTTGTTTGTACCTGCAACAT
TGCCAGTACACCCTTCCCAGTCAGAGTTAGAAAGCATTCGGTCTGTGCTT
CATGAAAGTGAGAAGGTTTTGGAAAGATTGCAGAAGCAGGAGGAGCAAAT
GTTGCAGGAAGTAACCGAAAAGGCTAAGGATCTCCATGAGAAAGAGTATA
AGCTTCCAAACCCAAAGCCTGAACGTTGCATGGCTGAGAGGCTTGCTTCC
TTAACATGTTACAAGGAACATATCAAAGACCCTTTGAAGTGTGCGGGTTT
TGTTAACAATTTTGCTGATTGCTTACGTAAGCTTGGCCCTTTAGGTGGAA
AATAAGATATACCAAGAAGTCGTTTAGAGGGAAATTCATATGAATGAAAT
GCAAATAAACTTGTAAACTACATATTGACAAACATTCTGTTGCTACCAAT
TTTGTGTAACATTTCCTT
back to top