GT620399

EST Overview
NameGT620399
Unique NameGT620399
TypeEST
OrganismLens culinaris (lentil)
Sequence length541
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT620399 vs. TrEMBL
Match: D7U9C9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_41.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00026083001 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.023e-20
Identity = 52/85 (61.18%), Postives = 54/85 (63.53%), Query Frame = 3
Query:   51 YDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFDGSPAKLAQPKGSEAPTQILTQD 305
            YDLDAKWDA LDLTVRR VYSSFAGAF GLLLFRSP TRW              YTECS+ F G PA    PK S+AP     QD
Sbjct:   11 YDLDAKWDACLDLTVRRFVYSSFAGAFGGLLLFRSPVTRWASVAFGAGLGLGSAYTECSQKFGGYPAMFLPPKISDAPASQEGQD 95          
BLAST of GT620399 vs. TrEMBL
Match: C6T522_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.014e-18
Identity = 47/81 (58.02%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   48 KYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFDGSPAKLAQPKGSEAPTQ 290
            ++D+DAKWDA +DLTVRR VYS+ AGAF GLL FRSP TRW              Y ECSRLFDG P  L  PK SE  TQ
Sbjct:   11 QFDIDAKWDACIDLTVRRFVYSATAGAFGGLLFFRSPVTRWASIAFGAGVGIGSAYAECSRLFDGPPTNLPLPKVSETATQ 91          
BLAST of GT620399 vs. TrEMBL
Match: B9MWE3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_592304 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.259e-18
Identity = 48/86 (55.81%), Postives = 58/86 (67.44%), Query Frame = 3
Query:   39 MGDKYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFDGSPAKLAQPK-GSEAPTQI 293
            M +K D++AKWDA LDL+VRR VYSS AGAF GLLLFR+P TRW              YT+CS++FDGS AKL  PK  S AP ++
Sbjct:    1 MAEKTDVNAKWDACLDLSVRRFVYSSLAGAFGGLLLFRTPVTRWASIAFGAGVGIGSAYTDCSQIFDGSTAKLVPPKTTSSAPEEL 86          
BLAST of GT620399 vs. TrEMBL
Match: A9PDC3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_826237 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.951e-18
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 3
Query:   39 MGDKYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFDGSPAKLAQPKGSEAPTQILT 299
            M +K D++AKWDA LDL+VRR VYSS AGAF GLLLFRSP +RW              YT+CSR+F GSPAK+  PK + +  + LT
Sbjct:    1 MAEKTDVNAKWDACLDLSVRRFVYSSLAGAFGGLLLFRSPVSRWASVAFGAGVGIGSAYTDCSRIFQGSPAKMECPKKTSSVHKELT 87          
BLAST of GT620399 vs. TrEMBL
Match: C5WT22_SORBI (Putative uncharacterized protein Sb01g001810 OS=Sorghum bicolor GN=Sb01g001810 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.585e-18
Identity = 47/80 (58.75%), Postives = 55/80 (68.75%), Query Frame = 3
Query:   48 KYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFDGSPAKLAQPKGSEAPT 287
            +YDLDAKWDA LDL++RR+ YSS AGAFAGLLLFRSP TRW              YTECS LF+G+P K + PK S  P+
Sbjct:   33 RYDLDAKWDACLDLSIRRVAYSSLAGAFAGLLLFRSPTTRWASVALGAGVGIGAAYTECSYLFNGAPPKWS-PKVSTIPS 111          
BLAST of GT620399 vs. TrEMBL
Match: B6SID3_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.492e-17
Identity = 45/80 (56.25%), Postives = 52/80 (65.00%), Query Frame = 3
Query:   48 KYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFDGSPAKLAQPKGSEAPT 287
            +YDLDAKWDA LDL++RR+ YSS  GAFAGLLLFRSP TRW              YTECS LF+G+P     PK S  P+
Sbjct:   31 RYDLDAKWDACLDLSIRRVAYSSLGGAFAGLLLFRSPTTRWASVALGAGVGIGAAYTECSYLFNGAPK--CSPKVSTIPS 108          
BLAST of GT620399 vs. TrEMBL
Match: B8AN69_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14258 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.240e-16
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:   48 KYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFDGSPAKLAQPKGSEAPT 287
            +YDLDAKWDA LDL++RR+ YS+  G FAGLLLFRSP TRW              YTECS LF+G+P K + PK S  P+
Sbjct:  607 RYDLDAKWDACLDLSIRRVAYSTLGGTFAGLLLFRSPTTRWASVALGAGVGIGAAYTECSYLFNGAPPKWS-PKVSTVPS 685          
BLAST of GT620399 vs. TrEMBL
Match: Q6AVR1_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=OSJNBa0075M12.11 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.115e-16
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 3
Query:   48 KYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFDGSPAKLAQPKGSEAPT 287
            +YDLDAKWDA LD+++RR+ YS+  G FAGLLLFRSP TRW              YTECS LF+G+P K + PK S  P+
Sbjct:   40 RYDLDAKWDACLDISIRRVAYSTLGGTFAGLLLFRSPTTRWASVALGAGVGIGAAYTECSYLFNGAPPKWS-PKVSTVPS 118          
BLAST of GT620399 vs. TrEMBL
Match: Q8GWC7_ARATH (Putative uncharacterized protein At1g72165/T9N14_2 OS=Arabidopsis thaliana GN=At1g72165/T9N14_2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.762e-16
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 3
Query:   36 SMGDKYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFD---GSPAKLAQPKGSEAPTQILTQDSE 311
            S+  +YD++AKWDA LDLTVRR VYSS  GAFAGLL FRSP TRW              Y++CSR FD    S A LA PK +   T  ++Q ++
Sbjct:    7 SVPPEYDVNAKWDACLDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASIALGAGIGIGSAYSDCSRAFDSPSSSSANLAAPKNNITETSPVSQAAD 101          
BLAST of GT620399 vs. TrEMBL
Match: C0PE69_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.607e-16
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   48 KYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFDGSP 248
            +YDLDAKWDA LDL++RR+ YSS  GAFAGLLLFRSP TRW              YTECS LF+G+P
Sbjct:   31 RYDLDAKWDACLDLSIRRVAYSSLGGAFAGLLLFRSPTTRWASVALGAGVGIGAAYTECSYLFNGAP 97          
BLAST of GT620399 vs. TAIR peptide
Match: AT1G72170.1 (| Symbols: | Domain of unknown function (DUF543) | chr1:27156403-27157516 FORWARD LENGTH=102)

HSP 1 Score: 88.5817 bits (218), Expect = 2.275e-18
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 3
Query:   36 SMGDKYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFD---GSPAKLAQPKGSEAPTQILTQDSE 311
            S+  +YD++AKWDA LDLTVRR VYSS  GAFAGLL FRSP TRW              Y++CSR FD    S A LA PK +   T  ++Q ++
Sbjct:    7 SVPPEYDVNAKWDACLDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASIALGAGIGIGSAYSDCSRAFDSPSSSSANLAAPKNNITETSPVSQAAD 101          
BLAST of GT620399 vs. TAIR peptide
Match: AT1G22520.2 (| Symbols: | Domain of unknown function (DUF543) | chr1:7952996-7954304 REVERSE LENGTH=179)

HSP 1 Score: 84.3445 bits (207), Expect = 4.290e-17
Identity = 44/86 (51.16%), Postives = 52/86 (60.47%), Query Frame = 3
Query:   33 RSMGDKYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFDGSPAK----LAQPKGSE 278
            +S   + D++AKWDA LDLT RR VYSS  GAFAGLL FRSP TRW              YT+CSR+FD S +     LA PK +E
Sbjct:    5 KSNSSESDVNAKWDACLDLTARRFVYSSLGGAFAGLLFFRSPVTRWASIAFGAGIGIGSAYTDCSRVFDASSSTSATLLAAPKSTE 90          
BLAST of GT620399 vs. TAIR peptide
Match: AT1G22520.1 (| Symbols: | Domain of unknown function (DUF543) | chr1:7953299-7954304 REVERSE LENGTH=99)

HSP 1 Score: 84.3445 bits (207), Expect = 4.290e-17
Identity = 44/86 (51.16%), Postives = 52/86 (60.47%), Query Frame = 3
Query:   33 RSMGDKYDLDAKWDASLDLTVRRLVYSSFAGAFAGLLLFRSPQTRWXXXXXXXXXXXXXXYTECSRLFDGSPAK----LAQPKGSE 278
            +S   + D++AKWDA LDLT RR VYSS  GAFAGLL FRSP TRW              YT+CSR+FD S +     LA PK +E
Sbjct:    5 KSNSSESDVNAKWDACLDLTARRFVYSSLGGAFAGLLFFRSPVTRWASIAFGAGIGIGSAYTDCSRVFDASSSTSATLLAAPKSTE 90          
The following BLAST results are available for this feature:
BLAST of GT620399 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7U9C9_VITVI7.023e-2061.18Whole genome shotgun sequence of line PN40024, sca... [more]
C6T522_SOYBN1.014e-1858.02Putative uncharacterized protein OS=Glycine max PE... [more]
B9MWE3_POPTR2.259e-1855.81Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PDC3_POPTR2.951e-1854.02Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
C5WT22_SORBI8.585e-1858.75Putative uncharacterized protein Sb01g001810 OS=So... [more]
B6SID3_MAIZE9.492e-1756.25Putative uncharacterized protein OS=Zea mays PE=4 ... [more]
B8AN69_ORYSI1.240e-1655.00Putative uncharacterized protein OS=Oryza sativa s... [more]
Q6AVR1_ORYSJ2.115e-1653.75Expressed protein OS=Oryza sativa subsp. japonica ... [more]
Q8GWC7_ARATH2.762e-1649.47Putative uncharacterized protein At1g72165/T9N14_2... [more]
C0PE69_MAIZE3.607e-1661.19Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
back to top
BLAST of GT620399 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G72170.12.275e-1849.47| Symbols: | Domain of unknown function (DUF543) ... [more]
AT1G22520.24.290e-1751.16| Symbols: | Domain of unknown function (DUF543) ... [more]
AT1G22520.14.290e-1751.16| Symbols: | Domain of unknown function (DUF543) ... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 51..67
score
NoneNo IPR availableSEGsegsegcoord: 48..61
score
IPR007512Protein of unknown function DUF543PFAMPF04418DUF543coord: 9..70
score: 5.4

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT620399 ID=GT620399; Name=GT620399; organism=Lens culinaris; type=EST; length=541bp
AAGAGCAAGATAGAAAGCACAAGAGATAATTCCGATCTATGGGTGACAAG
TACGACCTGGATGCCAAATGGGACGCCTCCCTTGATCTCACCGTCCGCCG
TCTCGTCTACTCTTCCTTCGCCGGTGCATTCGCCGGTCTCCTTTTATTCA
GGAGTCCTCAGACTCGTTGGGCTTCTATTGCTTTTGGCGCTGGAATTGGA
ATAGGATCTGCTTACACAGAATGTTCTCGTTTGTTTGATGGATCTCCAGC
GAAGCTAGCACAACCTAAGGGCTCAGAGGCTCCTACTCAGATTCTCACAC
AGGATTCTGAGTAGATGCTTTTAATGGATCCTGGTTCCTGGACAGTGAAG
CTGAACATTCTTCTTGTGACTATTGATGCTTCTTTTACTTAGTTATAGCA
ATTGACAATGTTGCACTCCATGATCATAAATTAACATCACGCATGGAAAT
TCATTTCCAAGCTGTTATCCTTTTTTCTCTTGTAATGCTGCGCTATGTTT
GTGTGGTAAATGATATAAAAGATTAAAAGAAGCTTTCTTCA
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR007512Mic10