GT620940

EST Overview
NameGT620940
Unique NameGT620940
TypeEST
OrganismLens culinaris (lentil)
Sequence length595
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Homology
BLAST of GT620940 vs. TrEMBL
Match: Q7XY14_SOYBN (C-type cytochrome biogenesis protein OS=Glycine max GN=CCDA PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.632e-51
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFPATMAM 326
            NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASK+PVIGGSLLLTYTTGY+SPLLLAASFAGALQSLLSFRK+SAWINP+SGAMLLGGGVYTFLDRLFP TM M
Sbjct:  237 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM 344          
BLAST of GT620940 vs. TrEMBL
Match: B9N580_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_269063 PE=4 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.306e-50
Identity = 100/108 (92.59%), Postives = 107/108 (99.07%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFPATMAM 326
            NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASK+PV+GGSLLLTYTTGY++PLLLAASFAGALQSLLSFRK+SAWINP+SGA+LLGGGVYTFLDRLFP TMAM
Sbjct:  158 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVVGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPMSGALLLGGGVYTFLDRLFPPTMAM 265          
BLAST of GT620940 vs. TrEMBL
Match: C6TLS2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.228e-50
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFPATMAM 326
            NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASK+PVI GSLLLTYTTGY+SPLLLAASFAGALQSLLSFRK+SAWINP+SGAMLLGGGVYTFLDRLFP TM M
Sbjct:  233 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIRGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM 340          
BLAST of GT620940 vs. TrEMBL
Match: Q8GZD1_LOTJA (Chloroplast biogenesis protein OS=Lotus japonicus GN=CCDA PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.964e-50
Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFPA-TMAM 326
            N PSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASK+PVIGGSLLLTYTTGYI+PLLLAASFAGALQSLLSFRKYSAWINP+SGAMLLGGGVYTFLD+LFPA TMAM
Sbjct:  237 NLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYSAWINPISGAMLLGGGVYTFLDKLFPATTMAM 345          
BLAST of GT620940 vs. TrEMBL
Match: B9SYH7_RICCO (Thiol:disulfide interchange protein dsbD, putative OS=Ricinus communis GN=RCOM_0517680 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.468e-50
Identity = 97/108 (89.81%), Postives = 107/108 (99.07%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFPATMAM 326
            NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASK+P++GGSLLLTYTTGY++PLLLAASFAGALQSLLSFRK+SAWINP+SGA+LLGGGVYTFLDRLFP +M+M
Sbjct:  243 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPIVGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPMSGALLLGGGVYTFLDRLFPVSMSM 350          
BLAST of GT620940 vs. TrEMBL
Match: B8BIW5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_35045 PE=4 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.933e-47
Identity = 92/105 (87.62%), Postives = 101/105 (96.19%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFPAT 317
            N PSSVQAYLAGLTFALAASPCSTPVLATLLGYVA S++P++GGSLLLTYTTGY++PLL+AASFAGALQSLLSFR+YSAWINP+SGA LLGGGVYT LDRLFPAT
Sbjct:  254 NLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLGGGVYTLLDRLFPAT 358          
BLAST of GT620940 vs. TrEMBL
Match: D7MU78_ARALY (Cytochrome c biogenesis protein family OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495514 PE=4 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.763e-47
Identity = 95/109 (87.16%), Postives = 104/109 (95.41%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFP-ATMAM 326
            NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA S++PVIGGSLLLTYTTGY++PL++AASFAGALQSLLS RK SAWINP+SGA+LLGGG+YTFLDRLFP ATM M
Sbjct:  242 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 350          
BLAST of GT620940 vs. TrEMBL
Match: Q6TGR9_DESSO (C-type cytochrome biogenesis protein OS=Descurainia sophia GN=CCDA PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.495e-46
Identity = 93/109 (85.32%), Postives = 104/109 (95.41%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFP-ATMAM 326
            NFPSS+QAYLAGLTFALAASPCSTPVLATLLGYVA S++P+IGGSLLLTYTTGY++PL++AASFAGALQSLLS RK SAWINP+SGA+LLGGG+YTFLDRLFP ATM M
Sbjct:  245 NFPSSIQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPIIGGSLLLTYTTGYVAPLIVAASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 353          
BLAST of GT620940 vs. TrEMBL
Match: C5Y464_SORBI (Putative uncharacterized protein Sb05g002430 OS=Sorghum bicolor GN=Sb05g002430 PE=4 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.495e-46
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFPAT-MAM 326
            N PS VQAYLAGLTFALAASPCSTPVLATLLGYVA S++P+IGGSLLLTYTTGY++PLL+AASFAGALQSLLSFR+YSAWINP+SGA LLGGGVYT LDR+FPAT MAM
Sbjct:  245 NLPSGVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPIIGGSLLLTYTTGYVAPLLVAASFAGALQSLLSFRRYSAWINPISGAFLLGGGVYTLLDRVFPATSMAM 353          
BLAST of GT620940 vs. TrEMBL
Match: Q8GZC9_MEDTR (Biogenesis protein OS=Medicago truncatula GN=CCDA PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.952e-46
Identity = 100/109 (91.74%), Postives = 101/109 (92.66%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFP-ATMAM 326
            NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYI P      FAGALQSLLSFRKYSAWINP+SGAMLLGGGVYTFLDRLFP ATMAM
Sbjct:  231 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYIFPYFW-LFFAGALQSLLSFRKYSAWINPISGAMLLGGGVYTFLDRLFPAATMAM 338          
BLAST of GT620940 vs. SwissProt
Match: CCDA2_ORYSJ (Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa subsp. japonica GN=CCDA2 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.839e-48
Identity = 92/105 (87.62%), Postives = 101/105 (96.19%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFPAT 317
            N PSSVQAYLAGLTFALAASPCSTPVLATLLGYVA S++P++GGSLLLTYTTGY++PLL+AASFAGALQSLLSFR+YSAWINP+SGA LLGGGVYT LDRLFPAT
Sbjct:  254 NLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLGGGVYTLLDRLFPAT 358          
BLAST of GT620940 vs. SwissProt
Match: CCDA1_ORYSJ (Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa subsp. japonica GN=CCDA1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.839e-48
Identity = 92/105 (87.62%), Postives = 101/105 (96.19%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFPAT 317
            N PSSVQAYLAGLTFALAASPCSTPVLATLLGYVA S++P++GGSLLLTYTTGY++PLL+AASFAGALQSLLSFR+YSAWINP+SGA LLGGGVYT LDRLFPAT
Sbjct:  259 NLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLGGGVYTLLDRLFPAT 363          
BLAST of GT620940 vs. SwissProt
Match: CCDA_ARATH (Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thaliana GN=CCDA PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.324e-48
Identity = 95/109 (87.16%), Postives = 104/109 (95.41%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFP-ATMAM 326
            NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA S++PVIGGSLLLTYTTGY++PL++AASFAGALQSLLS RK SAWINP+SGA+LLGGG+YTFLDRLFP ATM M
Sbjct:  246 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 354          
BLAST of GT620940 vs. SwissProt
Match: YCXN_PORPU (Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra purpurea PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.598e-9
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRL 305
            N   +++ YL+G+   LA S CSTP+  TLL +V ++ N  IG   +L Y+ GYI P+++ + F+    +  S    +    P SG +LL  G ++    +
Sbjct:  137 NTNQNIKMYLSGVGIGLAISSCSTPIFVTLLIWVTSNHNLFIGLIFILIYSIGYIFPIIIGSLFSSRFLTTASSPFLNNLWAPFSGTILLSAGTFSLFSSI 237          
BLAST of GT620940 vs. TAIR peptide
Match: AT5G54290.2 (| Symbols: CcdA | cytochrome c biogenesis protein family | chr5:22051097-22053923 FORWARD LENGTH=355)

HSP 1 Score: 190.274 bits (482), Expect = 6.640e-49
Identity = 95/109 (87.16%), Postives = 104/109 (95.41%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFP-ATMAM 326
            NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA S++PVIGGSLLLTYTTGY++PL++AASFAGALQSLLS RK SAWINP+SGA+LLGGG+YTFLDRLFP ATM M
Sbjct:  247 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 355          
BLAST of GT620940 vs. TAIR peptide
Match: AT5G54290.1 (| Symbols: CcdA | cytochrome c biogenesis protein family | chr5:22051097-22053923 FORWARD LENGTH=354)

HSP 1 Score: 190.274 bits (482), Expect = 6.640e-49
Identity = 95/109 (87.16%), Postives = 104/109 (95.41%), Query Frame = 3
Query:    3 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPVSGAMLLGGGVYTFLDRLFP-ATMAM 326
            NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA S++PVIGGSLLLTYTTGY++PL++AASFAGALQSLLS RK SAWINP+SGA+LLGGG+YTFLDRLFP ATM M
Sbjct:  246 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 354          
The following BLAST results are available for this feature:
BLAST of GT620940 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q7XY14_SOYBN2.632e-5194.44C-type cytochrome biogenesis protein OS=Glycine ma... [more]
B9N580_POPTR1.306e-5092.59Predicted protein (Fragment) OS=Populus trichocarp... [more]
C6TLS2_SOYBN2.228e-5093.52Putative uncharacterized protein OS=Glycine max PE... [more]
Q8GZD1_LOTJA4.964e-5094.50Chloroplast biogenesis protein OS=Lotus japonicus ... [more]
B9SYH7_RICCO8.468e-5089.81Thiol:disulfide interchange protein dsbD, putative... [more]
B8BIW5_ORYSI3.933e-4787.62Putative uncharacterized protein OS=Oryza sativa s... [more]
D7MU78_ARALY8.763e-4787.16Cytochrome c biogenesis protein family OS=Arabidop... [more]
Q6TGR9_DESSO1.495e-4685.32C-type cytochrome biogenesis protein OS=Descuraini... [more]
C5Y464_SORBI1.495e-4686.24Putative uncharacterized protein Sb05g002430 OS=So... [more]
Q8GZC9_MEDTR1.952e-4691.74Biogenesis protein OS=Medicago truncatula GN=CCDA ... [more]
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BLAST of GT620940 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
CCDA2_ORYSJ2.839e-4887.62Cytochrome c-type biogenesis ccda-like chloroplast... [more]
CCDA1_ORYSJ2.839e-4887.62Cytochrome c-type biogenesis ccda-like chloroplast... [more]
CCDA_ARATH6.324e-4887.16Cytochrome c-type biogenesis ccda-like chloroplast... [more]
YCXN_PORPU2.598e-931.68Putative cytochrome c-type biogenesis protein dbsD... [more]
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BLAST of GT620940 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G54290.26.640e-4987.16| Symbols: CcdA | cytochrome c biogenesis protein ... [more]
AT5G54290.16.640e-4987.16| Symbols: CcdA | cytochrome c biogenesis protein ... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003834Cytochrome c assembly protein, transmembrane domainPFAMPF02683DsbDcoord: 5..98
score: 1.1

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT620940 ID=GT620940; Name=GT620940; organism=Lens culinaris; type=EST; length=595bp
CCAATTTTCCATCAAGTGTGCAAGCATATTTAGCTGGGCTTACATTTGCA
TTAGCTGCCTCACCCTGCAGTACACCTGTTCTGGCTACTCTTCTGGGATA
TGTCGCTGCATCCAAGAATCCAGTGATTGGAGGCAGCTTGCTTTTGACAT
ACACAACAGGATACATTTCTCCCTTACTTCTGGCTGCTTCTTTTGCTGGG
GCCTTACAGAGTTTGCTTTCATTTCGCAAGTACTCAGCATGGATCAATCC
TGTAAGCGGAGCAATGCTGTTAGGAGGTGGTGTATATACCTTCTTAGATA
GGCTCTTCCCAGCCACAATGGCAATGTAGAAAATCTTGTGGCTCTTTAAT
ATGTAGTGATCTTTTACTTGAAAACAGTTAAATATACAACTAACTACTCT
TCCCAACATATATTGTAATGATGACCATAATTCCCTTGCCTCAGTCTTAT
TTTTCATGCTCGAACAAAGCACATGGAGTTGTACATGTCTTTTGTTAGAG
AATAGGTGCTCAGCAAACAGCTCCAAGTGTTACAATACATATCTCATGTC
ATCATCAGTGTATTGTGTAGATGTTATGATCAAAAAATTTCCTCC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0017004cytochrome complex assembly
GO:0055114obsolete oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR003834Cyt_c_assmbl_TM_dom