GT621792

EST Overview
NameGT621792
Unique NameGT621792
TypeEST
OrganismLens culinaris (lentil)
Sequence length774
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Homology
BLAST of GT621792 vs. TrEMBL
Match: C6T7Z0_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.997e-33
Identity = 85/157 (54.14%), Postives = 102/157 (64.97%), Query Frame = 3
Query:  249 LRRKHKMSYESDMFSIDPIQNLDSYCFLPNENLENYSSSDNGSHLTYPSFQALEQYSALGSS------------------NNSPVSKLHSKSYAFTSQDSLEIINNSLENELCLTHNQDDLWHKIRELENAMLGE--DVVDVYNDNDMIREESDPLL 659
            + +KHKMSY+S  FSI+P QNL S CFL + NL+ YSSSDNGSH TYPS    EQY  L SS                  NNSPVSKL SK   F+SQ+SLEI++ SLEN+  LT N D+L HKIRELE+AMLG   D++D Y  + +I EESD  L
Sbjct:    3 MSQKHKMSYDSSRFSIEPAQNLGSCCFLQSGNLDYYSSSDNGSHATYPSVCIFEQYCTLESSTNNNFPSLNSPSTVSFSPNNSPVSKLQSKPNVFSSQNSLEIVDESLENKSFLTLNDDELRHKIRELESAMLGHDTDILDTY--DTIIPEESDSFL 157          
BLAST of GT621792 vs. TrEMBL
Match: B9SST2_RICCO (Chitin-inducible gibberellin-responsive protein, putative OS=Ricinus communis GN=RCOM_0047210 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.144e-19
Identity = 65/178 (36.52%), Postives = 96/178 (53.93%), Query Frame = 3
Query:  300 PIQNLDSYCFLPNENLENYSSSDNGSHLTYPSFQALEQYSALGSS-------------------NNSPVSKLHSKSYAFTSQDSLEIINNSLENELCLTHNQDDLWHKIRELENAMLGE-DVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDIETTE 773
            P++  +SY +  N+NL+ Y  SD+GS   + S +  +Q+S L SS                   N S +S+ +S+SY     DS E  + S + E  + H       K+RELE AMLG  D +DVYN   M ++ S+ +  E EKW  +M+ +SR DLKEVL+ CA+A+  ND+ T E
Sbjct:   20 PVRPRESYHWHSNQNLDQYPMSDDGSQEMHLSAETFDQHSTLESSSGTGGYPVQTSPSTASFSPNESVISQPNSQSYILDQHDSSENTSGSPDREAYVIH-------KLRELETAMLGPADDLDVYNI--MTQDGSNQITSEEEKWKFLMETVSRRDLKEVLYACAQAIDSNDMLTVE 188          
BLAST of GT621792 vs. TrEMBL
Match: D7T879_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_90.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00037777001 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.146e-19
Identity = 66/175 (37.71%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  255 RKHKMSYESDMFSIDPI-QNLDSYCFLPNENLENYSSSDNGSHL-TYPSFQALEQYSALGSSNNSPVSKLHSKSYAFTSQDSLEIINNSLENELCLTHNQDDLWHKIRELENAMLGEDVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDIETTE 773
            +KH +S  S  F   P+ Q+     F      E Y + ++ S   ++P + +    S   S   SP S+  S++Y      S E  + S  +  CLT + ++L HK+RELE AMLG D  D+ + +++I  E + + LE EKW +MM++ISRGDLKEVL +CAKAV++NDI   E
Sbjct:    5 QKHGISGRSGSFYSQPVPQDDQGMHFSGPTYCEQYGTHESSSATGSFPIYNSPSTVSF--SPEGSPASQQDSQTYPSDQLHSPENGHGSPISGSCLTDDVNELRHKLRELETAMLGPDS-DILDVHEVIPRELNKISLEREKWKQMMEVISRGDLKEVLVSCAKAVADNDILRAE 176          
BLAST of GT621792 vs. TrEMBL
Match: B9IAQ7_POPTR (GRAS family transcription factor OS=Populus trichocarpa GN=GRAS54 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.536e-17
Identity = 62/181 (34.25%), Postives = 95/181 (52.49%), Query Frame = 3
Query:  279 SDMFSIDPIQNLDSYCFLPNENLEN--YSS-SDNGSHLTYPS----FQALEQYSALGS-------------SNNSPVSKLHSKSYAFTSQDSLEIINNSLENELCLTHNQDDLWHKIRELENAMLGEDVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDI 761
            S  F   P+Q +++YC   +  L+   YSS S  G+  T P+    +  LE  SA GS              N SP+S+  S+SY+   + S +  + S  +  C+T +  D  HK+RELE  M G D   + +  + +   ++   LE + W ++M +ISRGDLK+VL  CAKAVS+ND+
Sbjct:   13 SSRFLYQPMQEVETYCKPQSRTLDRQIYSSGSTQGTPFTIPNSHEQYCTLESSSANGSYAAYNSPSTVSFSPNGSPLSQQESQSYSLEPRHSPDNASGSPLSGSCITDDAHDFSHKLRELETVMFGPDSDIIDSIENALESGTNIESLEMDSWRQIMDVISRGDLKQVLIACAKAVSDNDL 193          
BLAST of GT621792 vs. TrEMBL
Match: B9GJX2_POPTR (GRAS family transcription factor OS=Populus trichocarpa GN=GRAS53 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.784e-16
Identity = 64/186 (34.41%), Postives = 95/186 (51.08%), Query Frame = 3
Query:  255 RKHKMSYESDMFSIDPIQNLDSYCFLPNENLENYSSSDNGSHLTYPSFQALEQYS-------------ALGSSNNSPVSKLHSKSYAFTSQDSLEIINNSLENELCLTHNQDDLWHKIRELENAMLGEDVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDIETTE 773
            +K  +S  S  +   P+Q  +SYC+ P +N++  S   + S +T   +  LE  S             A  S N S VS+ +S+SY    QDS E    S  +E  +TH       K+RELE AMLG D  ++   +       + ++ EAEKW  +++M+SRGDLKE L TCA A++  D+ T E
Sbjct:    5 QKKTISDGSRRYGDQPMQYQESYCWPPIQNIDAGSQGTHLSAMTSDQYCTLESSSETSAYPVHNSPSTASFSPNESVVSQPNSQSYPSDLQDSSENACGSPTSESYVTH-------KLRELETAMLGPDSDNLDMHSMTAMPGPNQIVSEAEKWKFLVEMMSRGDLKEALCTCALAIANGDMFTVE 183          
BLAST of GT621792 vs. TrEMBL
Match: A5ATM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004660 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.438e-15
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 3
Query:  531 CLTHNQDDLWHKIRELENAMLGEDVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDIETTE 773
            CLT + ++L HK+RELE AMLG D  D+ + +++I  E + + LE EKW +MM++ISRGDLKEVL +CAKAV++NDI   E
Sbjct:   15 CLTDDVNELRHKLRELETAMLGPDS-DILDVHEVIPRELNKISLEREKWKQMMEVISRGDLKEVLVSCAKAVADNDILRAE 94          
BLAST of GT621792 vs. TrEMBL
Match: B9T6K1_RICCO (Chitin-inducible gibberellin-responsive protein, putative OS=Ricinus communis GN=RCOM_1120410 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.217e-14
Identity = 59/176 (33.52%), Postives = 87/176 (49.43%), Query Frame = 3
Query:  300 PIQNLDSYCFLPNENLEN---YSSSDNGSHLTYPSFQALEQYSALGSS-------------------NNSPVSKLHSKSYAFTSQDSLEIINNSLENELCLTHNQDDLWHKIRELENAMLGEDVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDI 761
            P+Q  ++YC    + L++   Y+ S   +HL+ P+  A +QY  L SS                   N SPVS+  S+SY      S +    S  +  C+T + +D   K+RELE  +LG D   + +     +  S     E + W +MM+ ISRGDLK VL  CAKAVS+ND+
Sbjct:   20 PMQEFEAYCMPQFQTLDHQLRYNGSSQRTHLSIPN--ARDQYCTLESSSANGSYPIYNSPSTVSLSPNGSPVSQQESQSYPPDLHHSPDNNYGSPISGSCITDDVNDFRSKLRELETDLLGPDYGFMESIESNFQNGSSIKSPEMDIWRQMMEAISRGDLKHVLIACAKAVSDNDL 193          
BLAST of GT621792 vs. TrEMBL
Match: C0Z2I8_ARATH (AT1G50600 protein OS=Arabidopsis thaliana GN=AT1G50600 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.806e-11
Identity = 58/183 (31.69%), Postives = 88/183 (48.09%), Query Frame = 3
Query:  255 RKHKMSYESDMFSIDP---------IQNLDSYCFLPNENLENYSSSDNGSHLTYPSFQALEQYSALGSSNNSPVSKLHSKSYAFTSQDSLEIINNS-LENELCLTHNQDDLWHKIRELENAMLGEDVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDIETTE 773
            +KH +   S MF   P         +Q  DSYC L        SSS   SH    +       ++  SSN SP+S+ ++ + +  +  S E  NNS L        N+ +L   +++LE AM+  DV + YN+     ++   +   +    + M+MISRGDLK VL+ CAKAV   D+E T+
Sbjct:    5 QKHMIQEGSSMFYHQPSSVKQMDLSVQTFDSYCTLE-------SSSGTKSHPCLNNKNNSSSTTSF-SSNESPISQANNNNLSRFNNHSPEENNNSPLSGSSATNTNETELSLMLKDLETAMMEPDVDNSYNNQGGFGQQHGVV---SSAMYRSMEMISRGDLKGVLYECAKAVENYDLEMTD 176          
BLAST of GT621792 vs. TrEMBL
Match: D7KGQ4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_474191 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.027e-10
Identity = 51/160 (31.87%), Postives = 81/160 (50.62%), Query Frame = 3
Query:  303 IQNLDSYCFLPNENLENYSSSDNGSHLTYPSFQALEQYSALGS--SNNSPVSKLHSKSYAFTSQDSLEIINNS-LENELCLTHNQDDLWHKIRELENAMLGEDVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDIETTE 773
            +Q  DSYC L        SSS   SH   P    +   S+  S  SN SP+S+ ++ + +  +  S +  NNS L       +N+ +L   +++LE AM+  D+ + +N      ++   +   +    + M+MISRGDLK VL+ CAKAV   D+E T+
Sbjct:    5 VQTFDSYCTLE-------SSSGTKSH---PCLNNINNSSSTTSFSSNESPISQANNNNLSRFNNHSPDDNNNSPLSGSSATNNNETELSLMLKDLETAMMEPDLDNSFNHQGGFGQQHRVV---SSAMYRAMEMISRGDLKGVLYECAKAVENYDLEMTD 151          
BLAST of GT621792 vs. TrEMBL
Match: Q8S5N0_ORYSJ (Putative SCARECROW gene regulator-like OS=Oryza sativa subsp. japonica GN=OJ1003C07.9 PE=4 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.430e-9
Identity = 52/158 (32.91%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  336 NENLENYSSSDNGSHLTYPSFQALEQ-YSALGSSNNSPVSKLHSKSYA----------FTSQDS-LEIINNSLENELCLTHNQDDLWHKIRELENAMLGEDVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDIETTE 773
            N    +Y+SSD+GS     S QA E  Y  L SS+ +     HS + +           +  DS  +   NS  +  C+T   D L  K+RELENA+LG ++   Y+  +   + +  ++   E W +++  I+ GDLK+V+  C KAV+END+  TE
Sbjct:   21 NHQDAHYASSDDGSQKIGSSPQAFEAPYCTLESSSANGAHPAHSSASSHSISPISGSPLSHHDSHSDHTYNSPPSASCVTEITD-LQIKLRELENAILGPELDIAYDSPESALQPN--IMATPENWRQLLG-INTGDLKQVIIACGKAVAENDVRLTE 174          
BLAST of GT621792 vs. SwissProt
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.830e-12
Identity = 58/183 (31.69%), Postives = 88/183 (48.09%), Query Frame = 3
Query:  255 RKHKMSYESDMFSIDP---------IQNLDSYCFLPNENLENYSSSDNGSHLTYPSFQALEQYSALGSSNNSPVSKLHSKSYAFTSQDSLEIINNS-LENELCLTHNQDDLWHKIRELENAMLGEDVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDIETTE 773
            +KH +   S MF   P         +Q  DSYC L        SSS   SH    +       ++  SSN SP+S+ ++ + +  +  S E  NNS L        N+ +L   +++LE AM+  DV + YN+     ++   +   +    + M+MISRGDLK VL+ CAKAV   D+E T+
Sbjct:   76 QKHMIQEGSSMFYHQPSSVKQMDLSVQTFDSYCTLE-------SSSGTKSHPCLNNKNNSSSTTSF-SSNESPISQANNNNLSRFNNHSPEENNNSPLSGSSATNTNETELSLMLKDLETAMMEPDVDNSYNNQGGFGQQHGVV---SSAMYRSMEMISRGDLKGVLYECAKAVENYDLEMTD 247          
BLAST of GT621792 vs. SwissProt
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.603e-8
Identity = 50/178 (28.09%), Postives = 78/178 (43.82%), Query Frame = 3
Query:  330 LPNENLENYSSSDNGSHLTYP-------------------------SFQALEQYSALGSSNNSPVSKLHS-KSYAFTSQDSLEIINNSLENEL---------CLTHNQDDLWHKIRELENAMLGEDVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSEND 758
            +P++NL+ +  SDN  H  +P                           QA      L SS  +   +  S  S +FT++    +      ++          C+T + +DL  K+++LE  MLG D   V   N +    ++ L LE EKW +MM  I RG+LKE+L  CA+AV E +
Sbjct:   16 IPSQNLKQFQYSDNPQHPCHPYRAPSDTHVVPHHYGLKSHSPDAGYESQATPNKYTLDSSEGAGCMRHDSPSSQSFTTRSGSPLSQEDSHSDSTDGSPVGASCVTEDPNDLKQKLKDLEAVMLGPDSEIV---NSLENSVANQLSLEPEKWVRMMG-IPRGNLKELLIACARAVEEKN 189          
BLAST of GT621792 vs. SwissProt
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.039e-7
Identity = 47/155 (30.32%), Postives = 69/155 (44.52%), Query Frame = 3
Query:  300 PIQNLDSYCFLPNENLENYSSSDNGSHLTYPSFQALEQYSALGSSNNSPVSKLHSKSYAFTSQDSLEIINNSLENELCLTHNQDDLWHKIRELENAMLGEDVVDVYND-NDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDI 761
            P Q L++Y F PN   +      N S      F  LE +      ++ P + L + +Y  T                C+T   +D  HKIRE+E  M+G D +D+  D  D     +     E   W   ++ ISR DL+  L +CAKA+SEND+
Sbjct:    5 PRQELEAYYFEPNSVEKLRYLPVNNSR---KRFCTLEPFP-----DSPPYNALSTATYDDTCGS-------------CVTDELNDFKHKIREIETVMMGPDSLDLLVDCTDSFDSTASQ---EINGWRSTLEAISRRDLRADLVSCAKAMSENDL 135          
BLAST of GT621792 vs. TAIR peptide
Match: AT1G50600.1 (| Symbols: SCL5 | scarecrow-like 5 | chr1:18737398-18739547 REVERSE LENGTH=597)

HSP 1 Score: 73.1738 bits (178), Expect = 1.827e-13
Identity = 58/183 (31.69%), Postives = 88/183 (48.09%), Query Frame = 3
Query:  255 RKHKMSYESDMFSIDP---------IQNLDSYCFLPNENLENYSSSDNGSHLTYPSFQALEQYSALGSSNNSPVSKLHSKSYAFTSQDSLEIINNS-LENELCLTHNQDDLWHKIRELENAMLGEDVVDVYNDNDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDIETTE 773
            +KH +   S MF   P         +Q  DSYC L        SSS   SH    +       ++  SSN SP+S+ ++ + +  +  S E  NNS L        N+ +L   +++LE AM+  DV + YN+     ++   +   +    + M+MISRGDLK VL+ CAKAV   D+E T+
Sbjct:   76 QKHMIQEGSSMFYHQPSSVKQMDLSVQTFDSYCTLE-------SSSGTKSHPCLNNKNNSSSTTSF-SSNESPISQANNNNLSRFNNHSPEENNNSPLSGSSATNTNETELSLMLKDLETAMMEPDVDNSYNNQGGFGQQHGVV---SSAMYRSMEMISRGDLKGVLYECAKAVENYDLEMTD 247          
BLAST of GT621792 vs. TAIR peptide
Match: AT5G48150.2 (| Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490)

HSP 1 Score: 57.3806 bits (137), Expect = 1.037e-8
Identity = 47/155 (30.32%), Postives = 69/155 (44.52%), Query Frame = 3
Query:  300 PIQNLDSYCFLPNENLENYSSSDNGSHLTYPSFQALEQYSALGSSNNSPVSKLHSKSYAFTSQDSLEIINNSLENELCLTHNQDDLWHKIRELENAMLGEDVVDVYND-NDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDI 761
            P Q L++Y F PN   +      N S      F  LE +      ++ P + L + +Y  T                C+T   +D  HKIRE+E  M+G D +D+  D  D     +     E   W   ++ ISR DL+  L +CAKA+SEND+
Sbjct:    5 PRQELEAYYFEPNSVEKLRYLPVNNSR---KRFCTLEPFP-----DSPPYNALSTATYDDTCGS-------------CVTDELNDFKHKIREIETVMMGPDSLDLLVDCTDSFDSTASQ---EINGWRSTLEAISRRDLRADLVSCAKAMSENDL 135          
BLAST of GT621792 vs. TAIR peptide
Match: AT5G48150.1 (| Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490)

HSP 1 Score: 57.3806 bits (137), Expect = 1.037e-8
Identity = 47/155 (30.32%), Postives = 69/155 (44.52%), Query Frame = 3
Query:  300 PIQNLDSYCFLPNENLENYSSSDNGSHLTYPSFQALEQYSALGSSNNSPVSKLHSKSYAFTSQDSLEIINNSLENELCLTHNQDDLWHKIRELENAMLGEDVVDVYND-NDMIREESDPLLLEAEKWNKMMQMISRGDLKEVLFTCAKAVSENDI 761
            P Q L++Y F PN   +      N S      F  LE +      ++ P + L + +Y  T                C+T   +D  HKIRE+E  M+G D +D+  D  D     +     E   W   ++ ISR DL+  L +CAKA+SEND+
Sbjct:    5 PRQELEAYYFEPNSVEKLRYLPVNNSR---KRFCTLEPFP-----DSPPYNALSTATYDDTCGS-------------CVTDELNDFKHKIREIETVMMGPDSLDLLVDCTDSFDSTASQ---EINGWRSTLEAISRRDLRADLVSCAKAMSENDL 135          
The following BLAST results are available for this feature:
BLAST of GT621792 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6T7Z0_SOYBN1.997e-3354.14Putative uncharacterized protein (Fragment) OS=Gly... [more]
B9SST2_RICCO2.144e-1936.52Chitin-inducible gibberellin-responsive protein, p... [more]
D7T879_VITVI8.146e-1937.71Whole genome shotgun sequence of line PN40024, sca... [more]
B9IAQ7_POPTR1.536e-1734.25GRAS family transcription factor OS=Populus tricho... [more]
B9GJX2_POPTR3.784e-1634.41GRAS family transcription factor OS=Populus tricho... [more]
A5ATM5_VITVI1.438e-1554.32Putative uncharacterized protein OS=Vitis vinifera... [more]
B9T6K1_RICCO1.217e-1433.52Chitin-inducible gibberellin-responsive protein, p... [more]
C0Z2I8_ARATH2.806e-1131.69AT1G50600 protein OS=Arabidopsis thaliana GN=AT1G5... [more]
D7KGQ4_ARALY9.027e-1031.88Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q8S5N0_ORYSJ3.430e-932.91Putative SCARECROW gene regulator-like OS=Oryza sa... [more]
back to top
BLAST of GT621792 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
SCL5_ARATH1.830e-1231.69Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
CIGR2_ORYSJ1.603e-828.09Chitin-inducible gibberellin-responsive protein 2 ... [more]
PAT1_ARATH1.039e-730.32Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
back to top
BLAST of GT621792 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G50600.11.827e-1331.69| Symbols: SCL5 | scarecrow-like 5 | chr1:18737398... [more]
AT5G48150.21.037e-830.32| Symbols: PAT1 | GRAS family transcription factor... [more]
AT5G48150.11.037e-830.32| Symbols: PAT1 | GRAS family transcription factor... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 37..59
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT621792 ID=GT621792; Name=GT621792; organism=Lens culinaris; type=EST; length=774bp
TTTACTGCACATGAATCTCAAATCCTTATTGGTTTTTGCTGCAAAGGAGC
AAGCTTGGTCGGCGCTACAGTTCAAATCATATAAAGTTTCAGTTTTTGTT
TAAGAATGTTTCAGAAATCGGATTAAAATGAACACGAAGTTTAAATAAGG
AGAAGCTATAGACATTTATTGCTGGAACAAATAGGTCAATCAGAAAGGTT
TGAAGGTTTCGTGTCTGAAAAAACATTGTATTCAAGGAAGCAAATACTCT
TCGACGCAAACATAAAATGTCATATGAATCAGACATGTTCAGCATTGATC
CTATTCAAAATCTTGACTCATATTGCTTCCTACCAAATGAGAATCTCGAA
AACTACTCGTCCTCTGATAATGGTAGCCATTTAACCTACCCTTCATTTCA
AGCTTTAGAACAATATTCCGCCCTTGGATCTTCTAACAACAGTCCAGTCT
CAAAGCTACATTCAAAATCTTACGCATTCACGTCGCAAGATTCGCTTGAA
ATTATCAACAATTCATTAGAGAACGAATTGTGTTTGACACATAACCAAGA
TGACTTGTGGCACAAGATAAGAGAGCTCGAAAATGCTATGTTGGGAGAGG
ATGTTGTCGATGTATATAATGACAATGATATGATTCGAGAAGAATCGGAT
CCACTTTTGTTAGAGGCAGAAAAGTGGAACAAAATGATGCAGATGATATC
AAGAGGGGATTTGAAAGAAGTGCTTTTTACTTGTGCAAAAGCAGTATCGG
AAAACGATATAGAAACAACTGAAT
back to top