GT621954

EST Overview
NameGT621954
Unique NameGT621954
TypeEST
OrganismLens culinaris (lentil)
Sequence length512
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT621954 vs. TrEMBL
Match: D5FFG9_MEDTR (MYB transcription factor MYB39 OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.324e-40
Identity = 86/114 (75.44%), Postives = 89/114 (78.07%), Query Frame = 2
Query:    2 NVTQSFTRENSSNGATAASSDSFGTQVSPISDLTQDYYXXXXXXXXXXXXXXDYY---QQFGFSDCITSPSGLFPQMDFNNSMEPNTPWIQGDTSDNFWNVENMLLFQQLNDNM 334
            +V QS+T ENSSNGA AASSDSFGTQVSPIS+LTQDYY              DYY   QQFGF DCITSPSGLFPQMDF NSMEPNTPWIQGDTSDNFWNVENMLLFQ  N NM
Sbjct:  217 HVAQSYTPENSSNGAAAASSDSFGTQVSPISELTQDYYNVPVGSNNNNNPNSDYYQQAQQFGFFDCITSPSGLFPQMDF-NSMEPNTPWIQGDTSDNFWNVENMLLFQHPNHNM 329          
BLAST of GT621954 vs. TrEMBL
Match: C6T8B5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.335e-24
Identity = 71/119 (59.66%), Postives = 83/119 (69.75%), Query Frame = 2
Query:    2 NVTQSFTRENSSNGATAASSDSFGTQVSPISDLTQDYYXXXXXXXXXXXXXXDYYQ--QFGFSD-CITSPSGLFPQ-MDFNNSMEPNTPW--IQGDTSDNFWNVENMLLFQQ--LNDNM 334
            +VTQS+T ENSS GA+  SSDSFGTQVS ISDLT+ YY              DYYQ  Q  +SD CITSPSGLFPQ +DF  SM+PNTPW    GD+SD+FWNVE+ML  +Q  +NDNM
Sbjct:  211 HVTQSYTPENSSTGAS--SSDSFGTQVSAISDLTE-YYTVTVSGNNNNTNSADYYQPSQISYSDSCITSPSGLFPQGLDF-QSMDPNTPWNMQSGDSSDSFWNVESMLFLEQQLMNDNM 325          
BLAST of GT621954 vs. TrEMBL
Match: Q0PJF5_SOYBN (MYB transcription factor MYB102 (Fragment) OS=Glycine max GN=MYB102 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.122e-18
Identity = 65/121 (53.72%), Postives = 75/121 (61.98%), Query Frame = 2
Query:    2 NVTQSFTR-ENSSNGATAASSDSFGTQVSPISDLTQDYYXXXXXXXXXXXXXXDYYQQFGFSD----CITSPSG-LFPQMDFNNSMEPNTPWIQ--GDTSDNFWNVENMLLFQQ--LNDNM 334
            +VTQS+T  ENSS G T   SDSFGTQVS ISDLT+ Y               DYYQ    S+    CITSPSG LFPQ     SM+PNTPW    GD+SDNFW+VE+ML  +Q  +NDNM
Sbjct:   79 HVTQSYTTPENSSTGGTR--SDSFGTQVSTISDLTEYY------SVPENTNSADYYQPSQISNYSDNCITSPSGFLFPQGLDLQSMDPNTPWNMQSGDSSDNFWDVESMLFLEQQLMNDNM 191          
BLAST of GT621954 vs. TrEMBL
Match: B9HIK1_POPTR (Predicted protein OS=Populus trichocarpa GN=MYB212 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.214e-16
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 2
Query:    2 NVTQSFTRENSSNGATAASSDSFGTQVSPISDLTQDYYXXXXXXXXXXXXXXDYYQ--QFGFSDCITSPSGLFPQ-MDFNNSMEPNTPW--IQGDTSDNFWNVENMLLFQQLNDNM 334
            +VTQS+T ENSS   TAASSDSF TQVSP+SDLT DYY              DY+Q  Q G+S+ + SP G F   +DF      +  W    GDTSDN WN+E++   QQ  +N+
Sbjct:  213 HVTQSYTPENSS---TAASSDSFATQVSPVSDLTTDYY----NIPVNRNTNPDYFQAGQVGYSESMISPPGFFNHGLDFQAMEHSSNQWPMDSGDTSDNMWNLEDIWFLQQQLNNL 321          
BLAST of GT621954 vs. TrEMBL
Match: B9HX62_POPTR (Predicted protein OS=Populus trichocarpa GN=MYB036 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.162e-15
Identity = 56/117 (47.86%), Postives = 70/117 (59.83%), Query Frame = 2
Query:    2 NVTQSFTRENSSNGATAASSDSFGTQVSPISDLTQDYYXXXXXXXXXXXXXXDYYQ--QFGFSDCITSPSGLFPQ-MDFNNSMEPNTPWI--QGDTSDNFWNVENM-LLFQQLNDNM 334
            +VT S+T ENSS   TAASSDSF  QVSP+SDLT DYY              DY+Q  Q G+S+ + SP+G F Q +DF      +  W+   GDTSDN WN E++  L QQ+N NM
Sbjct:  207 HVTPSYTPENSS---TAASSDSFAAQVSPVSDLTTDYY----YIPVNHNPNPDYFQADQGGYSESMISPAGYFNQGLDFQAMEHNSNQWLMESGDTSDNLWNPEDIWFLQQQMNYNM 316          
BLAST of GT621954 vs. TrEMBL
Match: D7SYH2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_77.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00034943001 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.284e-14
Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = 2
Query:    5 VTQSFTRENSSNGATAASSDSFGTQVSPISDLTQDYYXXXXXXXXXXXXXXDYYQ--QFGFSDCITSPSGLFPQ-MDFNNSMEPNTPWIQGD---TSDNFWNVENM 304
            V+  +T ENSS   TAASSDSFG QVSP+SDLT+ Y               D++Q  Q G++D + SPSG F Q +DF  SMEPNT W +G    T+DN WNVE++
Sbjct:  200 VSTGYTPENSS---TAASSDSFGAQVSPVSDLTEIY-----NFPVSDNQNPDFFQTGQVGYTDSLISPSGYFNQGLDF-QSMEPNTQWYEGGDTATADNLWNVEDI 296          
BLAST of GT621954 vs. TrEMBL
Match: C3W4Q3_VITVI (R2R3 transcription factor MYB108-like protein 1 OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.284e-14
Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = 2
Query:    5 VTQSFTRENSSNGATAASSDSFGTQVSPISDLTQDYYXXXXXXXXXXXXXXDYYQ--QFGFSDCITSPSGLFPQ-MDFNNSMEPNTPWIQGD---TSDNFWNVENM 304
            V+  +T ENSS   TAASSDSFG QVSP+SDLT+ Y               D++Q  Q G++D + SPSG F Q +DF  SMEPNT W +G    T+DN WNVE++
Sbjct:  200 VSTGYTPENSS---TAASSDSFGAQVSPVSDLTEIY-----NFPVSDNQNPDFFQTDQVGYTDSLISPSGYFNQGLDF-QSMEPNTQWYEGGDTATADNLWNVEDI 296          
BLAST of GT621954 vs. TrEMBL
Match: A5B5N9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029107 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.284e-14
Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = 2
Query:    5 VTQSFTRENSSNGATAASSDSFGTQVSPISDLTQDYYXXXXXXXXXXXXXXDYYQ--QFGFSDCITSPSGLFPQ-MDFNNSMEPNTPWIQGD---TSDNFWNVENM 304
            V+  +T ENSS   TAASSDSFG QVSP+SDLT+ Y               D++Q  Q G++D + SPSG F Q +DF  SMEPNT W +G    T+DN WNVE++
Sbjct:  200 VSTGYTPENSS---TAASSDSFGAQVSPVSDLTEIY-----NFPVSDNQNPDFFQTGQVGYTDSLISPSGYFNQGLDF-QSMEPNTQWYEGGDTATADNLWNVEDI 296          
BLAST of GT621954 vs. TrEMBL
Match: B9RZV9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1002070 PE=4 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.244e-9
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    2 NVTQSFTRENSSNGATAASSDSFGTQVSPISDLTQDYYXXXXXXXXXXXXXXDYYQ--QFGFSDCITSPSGLFPQ-MDFNNSMEPNT---PWIQ-GDTSDNFWNVENM 304
            +VT S+T   +S+  TAASSDSFGTQVSP+SD+T +                +Y+Q  Q  +S+ + SPSG F Q +DF  +ME N     W   GDT+DN W+V+++
Sbjct:   70 HVTPSYTTPETSS--TAASSDSFGTQVSPVSDMTNNNDHYSISVNHNANPDTNYFQSGQVCYSESMISPSGYFNQGLDF-QAMEQNNINQLWADGGDTTDNLWSVDDI 174          
The following BLAST results are available for this feature:
BLAST of GT621954 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 9
Match NameE-valueIdentityDescription
D5FFG9_MEDTR2.324e-4075.44MYB transcription factor MYB39 OS=Medicago truncat... [more]
C6T8B5_SOYBN2.335e-2459.66Putative uncharacterized protein OS=Glycine max PE... [more]
Q0PJF5_SOYBN1.122e-1853.72MYB transcription factor MYB102 (Fragment) OS=Glyc... [more]
B9HIK1_POPTR5.214e-1646.55Predicted protein OS=Populus trichocarpa GN=MYB212... [more]
B9HX62_POPTR1.162e-1547.86Predicted protein OS=Populus trichocarpa GN=MYB036... [more]
D7SYH2_VITVI1.284e-1449.06Whole genome shotgun sequence of line PN40024, sca... [more]
C3W4Q3_VITVI1.284e-1449.06R2R3 transcription factor MYB108-like protein 1 OS... [more]
A5B5N9_VITVI1.284e-1449.06Putative uncharacterized protein OS=Vitis vinifera... [more]
B9RZV9_RICCO1.244e-941.67Putative uncharacterized protein OS=Ricinus commun... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 39..52
score
NoneNo IPR availableSEGsegsegcoord: 12..25
score
NoneNo IPR availableSEGsegsegcoord: 26..38
score: NAcoord: 46..60
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT621954 ID=GT621954; Name=GT621954; organism=Lens culinaris; type=EST; length=512bp
CAATGTAACACAAAGTTTTACACGGGAAAATAGTAGCAATGGTGCGACGG
CCGCATCATCGGATTCATTCGGGACACAAGTTTCGCCAATCTCGGATTTA
ACTCAAGATTATTACAATGTCCCGATTAGTGGCAACAACAATATTAACCC
TAATTCAGATTATTACCAACAATTTGGATTTTCAGATTGCATCACTAGTC
CATCAGGTTTGTTCCCTCAAATGGATTTCAATAATTCAATGGAACCAAAC
ACACCTTGGATTCAAGGGGACACATCCGACAATTTCTGGAATGTTGAAAA
CATGTTGCTCTTTCAACAACTCAATGACAACATGTGAAAATAATGAAAAT
AAAAAGAGTGTTATTAATTATTATGAAATATGTTTTACAGATCATGATAA
AGTAATATAGAAGTAGAAAAACGAGCAAATAGAATAAATTCATATATGTA
GGACACACATGTAGATTTAAAATTAAGGAATATAAGAACAAAGAAGAAAA
ATGTAAATTAAT
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