GT622465

EST Overview


Name	GT622465
Unique Name	GT622465
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	735

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

[Close]

BLAST of GT622465 vs. TrEMBL
Match: B7FL29_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 9.962e-56
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGG+NRGRVG+IKNREKHKGTFETIHVQDATGHEFATRL NVFTIGKGTKPWVSLPKGKGIKLT
Sbjct:  139 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGKNRGRVGVIKNREKHKGTFETIHVQDATGHEFATRLVNVFTIGKGTKPWVSLPKGKGIKLT 247

[Close]

BLAST of GT622465 vs. TrEMBL
Match: C6TNY3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.699e-55
Identity = 103/109 (94.50%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+IRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIHVQDATGHEFATR+GNVFTIGKGTKPW+SLPKGKGIKL+
Sbjct:  139 LNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLS 247

[Close]

BLAST of GT622465 vs. TrEMBL
Match: C6TJG9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.699e-55
Identity = 103/109 (94.50%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+IRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIHVQDATGHEFATR+GNVFTIGKGTKPW+SLPKGKGIKL+
Sbjct:  139 LNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLS 247

[Close]

BLAST of GT622465 vs. TrEMBL
Match: C6TN03_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.219e-55
Identity = 102/109 (93.58%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+IRANDT+KLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIHVQDATGHEFATR+GNVFTIGKGTKPW+SLPKGKGIKL+
Sbjct:  139 LNTYDGRTIRYPDPLIRANDTVKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLS 247

[Close]

BLAST of GT622465 vs. TrEMBL
Match: B9I718_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_240413 PE=4 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.899e-55
Identity = 103/109 (94.50%), Postives = 108/109 (99.08%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ANDTIKLDLE NKIVDFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPW+SLPKGKGIKL+
Sbjct:  139 LNTYDGRTIRYPDPLIKANDTIKLDLENNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWISLPKGKGIKLS 247

[Close]

BLAST of GT622465 vs. TrEMBL
Match: A9PD40_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.899e-55
Identity = 103/109 (94.50%), Postives = 108/109 (99.08%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ANDTIKLDLE NKIVDFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPW+SLPKGKGIKL+
Sbjct:  139 LNTYDGRTIRYPDPLIKANDTIKLDLENNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWISLPKGKGIKLS 247

[Close]

BLAST of GT622465 vs. TrEMBL
Match: Q8LJW0_SOYBN (40S ribosomal S4 protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.786e-55
Identity = 102/109 (93.58%), Postives = 109/109 (100.00%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+IRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIHVQD+TGHEFATR+GNVFTIGKGTKPW+SLPKGKGIKL+
Sbjct:  139 LNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDSTGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLS 247

[Close]

BLAST of GT622465 vs. TrEMBL
Match: B9N3A7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_837007 PE=4 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 8.434e-55
Identity = 102/109 (93.58%), Postives = 108/109 (99.08%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ANDTIKLDLE NKIVDFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIHVQDATGHEFATRLGNVFTIGKGTKPW+SLPKGKGIKL+
Sbjct:  139 LNTYDGRTIRYPDPLIKANDTIKLDLENNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWISLPKGKGIKLS 247

[Close]

BLAST of GT622465 vs. TrEMBL
Match: B7FHM3_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.101e-54
Identity = 106/131 (80.92%), Postives = 114/131 (87.02%), Query Frame = -1

Query:  151 MRNTMSFIFTHCLVYGS-----LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 528
            MR ++S      + +G      LNTYDGRTIRYPDP+I+ANDTIKLDLE NKI DFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGTFETIHVQDA+GHEFATRLGN FTIGKGTKPWVSLPKGKGIKLT
Sbjct:   49 MRQSLSSARVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGTFETIHVQDASGHEFATRLGNAFTIGKGTKPWVSLPKGKGIKLT 179

[Close]

BLAST of GT622465 vs. TrEMBL
Match: D7L9D5_ARALY (40S ribosomal protein S4 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_900077 PE=4 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.879e-54
Identity = 101/109 (92.66%), Postives = 108/109 (99.08%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ NDTIKLDLEENKIV+FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIH+QD+TGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT
Sbjct:  139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 247

[Close]

BLAST of GT622465 vs. SwissProt
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.492e-56
Identity = 102/109 (93.58%), Postives = 107/109 (98.17%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            +NTYDGRTIRYPDP+I+ANDTIKLDLE NKI DFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT
Sbjct:  135 INTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 243

[Close]

BLAST of GT622465 vs. SwissProt
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 215.312 bits (547), Expect = 2.762e-55
Identity = 100/109 (91.74%), Postives = 108/109 (99.08%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ NDTIKLDLEENKIV+FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIH+QD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKLT
Sbjct:  139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLT 247

[Close]

BLAST of GT622465 vs. SwissProt
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.762e-55
Identity = 100/109 (91.74%), Postives = 108/109 (99.08%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ NDTIKLDLEENKIV+FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIH+QD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKLT
Sbjct:  139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLT 247

[Close]

BLAST of GT622465 vs. SwissProt
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.153e-55
Identity = 99/109 (90.83%), Postives = 107/109 (98.17%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ANDTIKLDLE NKIVDFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FET+H+QD+ GHEFATRLGNVFT+GKGTKPWVSLPKGKGIKLT
Sbjct:  139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLT 247

[Close]

BLAST of GT622465 vs. SwissProt
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.371e-54
Identity = 101/109 (92.66%), Postives = 106/109 (97.25%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ANDTIKLDLE NKIVDFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIHVQDA GHEFATRLGNVFTIGKGTKPWVSLPK KGIKL+
Sbjct:  139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLS 247

[Close]

BLAST of GT622465 vs. SwissProt
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.371e-54
Identity = 99/109 (90.83%), Postives = 107/109 (98.17%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ NDTIKLDLE NKIV+FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIH+QD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKLT
Sbjct:  139 LNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLT 247

[Close]

BLAST of GT622465 vs. SwissProt
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 2.585e-53
Identity = 97/109 (88.99%), Postives = 105/109 (96.33%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ANDTIK+DLE NKIVDFIKFDVGNVVMVTGGRN GRVG+IKNREKHKG+FETIHV+DA GH+FATRLGNVFTIGKG KPWVSLPKGKGIKL+
Sbjct:  139 LNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLS 247

[Close]

BLAST of GT622465 vs. SwissProt
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.676e-52
Identity = 95/109 (87.16%), Postives = 105/109 (96.33%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ANDTIK+DLE NKIVDFIKFDVGNVVMVTGGRN GRVG+IKNREKHKG+FETIHV+D+ GH+FATR+GNVFTIGKG KPWVSLPKGKGIKL+
Sbjct:  139 LNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLS 247

[Close]

BLAST of GT622465 vs. SwissProt
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 5.057e-41
Identity = 74/109 (67.89%), Postives = 91/109 (83.49%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            L T+D RTIRYPDP+I+ NDTI++DLE  KI DFIKFD GN+ MVTGG N GR+G+I NREKH G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LT
Sbjct:  139 LVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLT 247

[Close]

BLAST of GT622465 vs. SwissProt
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 8.625e-41
Identity = 73/109 (66.97%), Postives = 91/109 (83.49%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            L T+D RTIRYPDP+I+ NDTI++DLE  KI DFIKFD GN+ MVTGG N GR+G+I NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LT
Sbjct:  139 LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLT 247

[Close]

BLAST of GT622465 vs. TAIR peptide
Match: AT5G07090.2 (| Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:2202783-2203805 FORWARD LENGTH=244)

HSP 1 Score: 215.312 bits (547), Expect = 2.752e-56
Identity = 100/109 (91.74%), Postives = 108/109 (99.08%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ NDTIKLDLEENKIV+FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIH+QD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKLT
Sbjct:  121 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLT 229

[Close]

BLAST of GT622465 vs. TAIR peptide
Match: AT5G07090.1 (| Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:2202410-2203805 FORWARD LENGTH=262)

HSP 1 Score: 215.312 bits (547), Expect = 2.752e-56
Identity = 100/109 (91.74%), Postives = 108/109 (99.08%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ NDTIKLDLEENKIV+FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIH+QD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKLT
Sbjct:  139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLT 247

[Close]

BLAST of GT622465 vs. TAIR peptide
Match: AT2G17360.1 (| Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr2:7546598-7548138 FORWARD LENGTH=261)

HSP 1 Score: 215.312 bits (547), Expect = 2.752e-56
Identity = 100/109 (91.74%), Postives = 108/109 (99.08%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ NDTIKLDLEENKIV+FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIH+QD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKLT
Sbjct:  139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLT 247

[Close]

BLAST of GT622465 vs. TAIR peptide
Match: AT5G58420.1 (| Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:23619599-23620896 FORWARD LENGTH=262)

HSP 1 Score: 213.001 bits (541), Expect = 1.366e-55
Identity = 99/109 (90.83%), Postives = 107/109 (98.17%), Query Frame = -1

Query:  151 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLT 477
            LNTYDGRTIRYPDP+I+ NDTIKLDLE NKIV+FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKG+FETIH+QD+TGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKLT
Sbjct:  139 LNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLT 247

[Close]

BLAST of GT622465 vs. TAIR peptide
Match: AT5G41460.1 (| Symbols: | Protein of unknown function (DUF604) | chr5:16589724-16592197 REVERSE LENGTH=524)

HSP 1 Score: 113.62 bits (283), Expect = 1.128e-25
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 1

Query:  487 HQTVSEYERHRVPHPECRWKMADPSALDKIVVYKKPDPHLWDRAPRRNCCRVMKSNKKGRMVMDVGICKDGEVSE 711
            + TVS YE HRV HPECRWKMA+PS +  ++VYKKPDPHLWDR+PRRNCCRV KS K   + + V +CK+GEV E
Sbjct:  449 NMTVSRYEIHRVAHPECRWKMANPSDIKTVIVYKKPDPHLWDRSPRRNCCRV-KSKKNNTLEISVAVCKEGEVVE 522

[Close]

BLAST of GT622465 vs. TAIR peptide
Match: AT4G11350.1 (| Symbols: | Protein of unknown function (DUF604) | chr4:6901714-6904160 FORWARD LENGTH=507)

HSP 1 Score: 112.849 bits (281), Expect = 1.923e-25
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 1

Query:  484 IHQTVSEYERHRVPHPECRWKMADPSALDKIVVYKKPDPHLWDRAPRRNCCRVMKSNKKGRMVMDVGICKDGEVSE 711
            ++ TVSEY RHRVP P CRW MA+P  ++ IVVYKKPDPHLW+R+PRRNCCRV+++ +   + ++VG+C+ GEV+E
Sbjct:  430 LNTTVSEYTRHRVPQPACRWDMANPEEINTIVVYKKPDPHLWNRSPRRNCCRVLQTKRNNTLWINVGVCRAGEVTE 505

[Close]

BLAST of GT622465 vs. TAIR peptide
Match: AT4G23490.1 (| Symbols: | Protein of unknown function (DUF604) | chr4:12251580-12253973 REVERSE LENGTH=526)

HSP 1 Score: 111.694 bits (278), Expect = 4.285e-25
Identity = 44/76 (57.89%), Postives = 62/76 (81.58%), Query Frame = 1

Query:  484 IHQTVSEYERHRVPHPECRWKMADPSALDKIVVYKKPDPHLWDRAPRRNCCRVMKSNKKGRMVMDVGICKDGEVSE 711
            ++ TVSEY  HRV HP CRWKM +P+ ++ IVVYKKPDPHLW+R+PRRNCCRV+++ +   + ++VG+C+ GEV+E
Sbjct:  449 LNTTVSEYTIHRVSHPSCRWKMTNPAEINTIVVYKKPDPHLWERSPRRNCCRVLQTKRNNTLWINVGVCRAGEVTE 524

[Close]

BLAST of GT622465 vs. TAIR peptide
Match: AT1G01570.1 (| Symbols: | Protein of unknown function (DUF604) | chr1:205176-207435 FORWARD LENGTH=478)

HSP 1 Score: 93.2041 bits (230), Expect = 1.577e-19
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 1

Query:  484 IHQTVSEYER-HRVPHPECRWKMADPSALDKIVVYKKPDPHLWD--RAPRRNCCRVMKSNKKGRMVMDVGICKDGEVSE 711
            + +T SEY R + +  PEC W M+DPS  ++++VYKKPDP  W+  RAPRR+CCRV+ + K G MV+DVG CKD E +E
Sbjct:  396 LRRTASEYVRWYDMWEPECDWDMSDPSEFERVIVYKKPDPDRWNKHRAPRRDCCRVLPTTKNGTMVIDVGACKDDEFAE 474

[Close]

BLAST of GT622465 vs. TAIR peptide
Match: AT2G17360.2 (| Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr2:7546598-7548041 FORWARD LENGTH=184)

HSP 1 Score: 80.4925 bits (197), Expect = 1.058e-15
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = -1

Query:  349 LNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVV 477
            LNTYDGRTIRYPDP+I+ NDTIKLDLEENKIV+FIKFDVG  V
Sbjct:  139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGKCV 181

[Close]

BLAST of GT622465 vs. TAIR peptide
Match: AT1G07850.1 (| Symbols: | Protein of unknown function (DUF604) | chr1:2426745-2428719 FORWARD LENGTH=541)

HSP 1 Score: 75.8702 bits (185), Expect = 2.605e-14
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1

Query:  529 PECRWKMADPSALDKIVVYKKPDPHLWDRAPRRNCCRVMKSNKKGRMVMDVGICKDGEVSE 711
            P CRW++  P  +D +VV K+PDP  W ++PRR+CCRV+ S +   M + VG C DGE+SE
Sbjct:  474 PGCRWRLDSPGKIDSVVVLKRPDPLRWHKSPRRDCCRVLPSRRNQTMYIWVGNCADGEISE 534

The following BLAST results are available for this feature:

BLAST of GT622465 vs. TrEMBL
BLAST of GT622465 vs. SwissProt
BLAST of GT622465 vs. TAIR peptide

BLAST of GT622465 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FL29_MEDTR	9.962e-56	97.25	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6TNY3_SOYBN	1.699e-55	94.50	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TJG9_SOYBN	1.699e-55	94.50	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TN03_SOYBN	2.219e-55	93.58	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9I718_POPTR	2.899e-55	94.50	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
A9PD40_POPTR	2.899e-55	94.50	Putative uncharacterized protein OS=Populus tricho...	[more]
Q8LJW0_SOYBN	3.786e-55	93.58	40S ribosomal S4 protein OS=Glycine max PE=2 SV=1	[more]
B9N3A7_POPTR	8.434e-55	93.58	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B7FHM3_MEDTR	1.101e-54	80.92	Putative uncharacterized protein OS=Medicago trunc...	[more]
D7L9D5_ARALY	1.879e-54	92.66	40S ribosomal protein S4 OS=Arabidopsis lyrata sub...	[more]

BLAST of GT622465 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS4_PRUAR	9.492e-56	93.58	40S ribosomal protein S4 OS=Prunus armeniaca GN=RP...	[more]
RS42_ARATH	2.762e-55	91.74	40S ribosomal protein S4-2 OS=Arabidopsis thaliana...	[more]
RS41_ARATH	2.762e-55	91.74	40S ribosomal protein S4-1 OS=Arabidopsis thaliana...	[more]
RS4_SOLTU	6.153e-55	90.83	40S ribosomal protein S4 OS=Solanum tuberosum GN=R...	[more]
RS4_GOSHI	1.371e-54	92.66	40S ribosomal protein S4 OS=Gossypium hirsutum GN=...	[more]
RS43_ARATH	1.371e-54	90.83	40S ribosomal protein S4-3 OS=Arabidopsis thaliana...	[more]
RS4_ORYSJ	2.585e-53	88.99	40S ribosomal protein S4 OS=Oryza sativa subsp. ja...	[more]
RS4_MAIZE	1.676e-52	87.16	40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ...	[more]
RS4X_MONDO	5.057e-41	67.89	40S ribosomal protein S4, X isoform OS=Monodelphis...	[more]
RS4_XENTR	8.625e-41	66.97	40S ribosomal protein S4 OS=Xenopus tropicalis GN=...	[more]

BLAST of GT622465 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT5G07090.2	2.752e-56	91.74	\| Symbols: \| Ribosomal protein S4 (RPS4A) family ...	[more]
AT5G07090.1	2.752e-56	91.74	\| Symbols: \| Ribosomal protein S4 (RPS4A) family ...	[more]
AT2G17360.1	2.752e-56	91.74	\| Symbols: \| Ribosomal protein S4 (RPS4A) family ...	[more]
AT5G58420.1	1.366e-55	90.83	\| Symbols: \| Ribosomal protein S4 (RPS4A) family ...	[more]
AT5G41460.1	1.128e-25	65.33	\| Symbols: \| Protein of unknown function (DUF604)...	[more]
AT4G11350.1	1.923e-25	59.21	\| Symbols: \| Protein of unknown function (DUF604)...	[more]
AT4G23490.1	4.285e-25	57.89	\| Symbols: \| Protein of unknown function (DUF604)...	[more]
AT1G01570.1	1.577e-19	53.16	\| Symbols: \| Protein of unknown function (DUF604)...	[more]
AT2G17360.2	1.058e-15	86.05	\| Symbols: \| Ribosomal protein S4 (RPS4A) family ...	[more]
AT1G07850.1	2.605e-14	49.18	\| Symbols: \| Protein of unknown function (DUF604)...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 31..49 score: NAcoord: 103..114 score
None	No IPR available	SEG	seg	seg	coord: 1..14 score
None	No IPR available	SEG	seg	seg	coord: 156..169 score
IPR006740	Protein of unknown function DUF604	PFAM	PF04646	DUF604	coord: 5..53 score: 1.7
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 43..167 score: 1.1
IPR005824	KOW	PFAM	PF00467	KOW	coord: 81..114 score: 4
IPR005824	KOW	SMART	SM00739	no description	coord: 78..105 score: 0
IPR013845	Ribosomal protein S4e, central	PFAM	PF00900	Ribosomal_S4e	coord: 43..74 score: 3.2

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT622465 ID=GT622465; Name=GT622465; organism=Lens culinaris; type=EST; length=735bp
TGGAAAACAAAATTGAAAAGACAATTAAAACCAAAAGAGTTGAACAAAAC
TACAAAACACTTGGTCTATATTATAAATTCATTCAATAGAAATTTAAGCA
GCAACTGCTTGTTGGGCTGCTGCAGCTCTTTTTCTAGCTTCCTCAATGAC
TGTAAGCTTGATACCCTTACCCTTGGGAAGAGATACCCATGGCTTTGTAC
CCTTGCCAATGGTGAACACATTGCCCAAACGAGTAGCAAACTCATGTCCA
GTGGCATCCTGAACGTGGATTGTCTCAAAGGTACCCTTATGTTTCTCCCT
GTTCTTGATGATTCCGACACGTCCCCTATTCCTTCCACCAGTAACCATAA
CTACATTCCCAACATCAAATTTGATGAAGTCAACAATCTTGTTCTCCTCA
AGATCCAGCTTAATGGTGTCATTTGCCCTGATGACAGGGTCTGGGTAGCG
GATGGTGCGGCCATCATAGGTGTTTAAGCTACCATACACCAGACAGTGAG
TGAATATGAAAGACATCGTGTTCCTCATCCAGAATGTCGATGGAAAATGG
CTGATCCTTCTGCTCTTGACAAAATTGTTGTATATAAGAAACCAGACCCA
CATCTATGGGATAGGGCACCAAGGAGAAACTGTTGCAGAGTGATGAAGTC
AAACAAGAAAGGAAGAATGGTGATGGATGTTGGTATATGTAAAGATGGCG
AGGTCAGCGAACCTTAATTGTAACTTGTGACAGAT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR006740	DUF604
IPR000876	Ribosomal_eS4
IPR005824	KOW
IPR013845	Ribosomal_eS4_central_region

Search form