GT622788
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT622788 vs. TrEMBL
Match: B9S5R0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0652480 PE=4 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.311e-26 Identity = 67/120 (55.83%), Postives = 84/120 (70.00%), Query Frame = 3 Query: 30 GLRDGTMDERTFFPEAS-GSSRSYHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDFKSTRPTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPT 386 G+R+G +DERTFFPEAS GSSR+ DSYQQ ++S+KS Y+ QF+++ D + HCFVLGTDFKS+ T K ++ QKPLHHFFGEW PKN+DSWLDLAS SR+ T Sbjct: 224 GMREG-IDERTFFPEASSGSSRNLQDSYQQLT-MSSYKS-YSHPQFESLADSTSKHQQEQPQ---HCFVLGTDFKSSTTRTIKLEKESEAQKPLHHFFGEWPPKNSDSWLDLASTSRLHT 337
BLAST of GT622788 vs. TrEMBL
Match: D7TZT0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00016762001 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.475e-20 Identity = 58/111 (52.25%), Postives = 69/111 (62.16%), Query Frame = 3 Query: 30 GLRDGTMDERTFFPEASGSSRSYHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDFKSTRPTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDL 362 G+R+G +DER FFPEASG+ R HDSY +S Y+ Q+Q+ DNP+ HCFVLGTDFKS+RP K + QKPLHHFFGEW KN DSWLDL Sbjct: 223 GMREG-VDERAFFPEASGTVRGLHDSYTPLTMSSS--KGYSHFQYQS-PADNPKQQQEQQEQQ-HCFVLGTDFKSSRPI--KVERDGEAQKPLHHFFGEWPLKNRDSWLDL 326
BLAST of GT622788 vs. TrEMBL
Match: B9GKU6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_548577 PE=4 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.513e-20 Identity = 59/129 (45.74%), Postives = 75/129 (58.14%), Query Frame = 3 Query: 9 RRHVQVQGLRDGTMDERTFFPEASGSSRSYHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDFKSTRPTTNKDKESET-TQKPLHHFFGEWTPKNTDSWLDLASNSRIPTDE 392 + H G+R+ +DER FFP+ GS+R DSY Q ++S+K Y+ SQFQ D + HCFVLGTD + T + E ET T KPLHHFF EW PK+ DSWLDLAS+SR T + Sbjct: 217 KEHRYYHGMRED-VDERAFFPDGLGSARGVQDSYNQLT-MSSYKG-YSLSQFQTFADTSKEEQQQPGQ---HCFVLGTDIIKSSATRSIKLEKETETLKPLHHFFDEWEPKDADSWLDLASSSRPHTSD 339
BLAST of GT622788 vs. TrEMBL
Match: B9GW17_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_645840 PE=4 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.951e-18 Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 3 Query: 48 MDERTFFPEASGSSRSYHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF-KSTRPTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSR 377 MD R FFP+A GS+R DSY Q ++S+K Y+ SQFQ+ + + HCFVLGTD KS+ + K ++ TQKPLHHFFGEW PK+ DS LDLAS+S+ Sbjct: 1 MDGRAFFPDALGSARGVQDSYNQLT-MSSYKG-YSQSQFQSFANTSKEEQQQPGH---HCFVLGTDIIKSSATRSIKLEKEPETQKPLHHFFGEWEPKDADSGLDLASSSK 106
BLAST of GT622788 vs. TrEMBL
Match: Q9LVK4_ARATH (Gb|AAF17567.1 OS=Arabidopsis thaliana PE=4 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.152e-9 Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 3 Query: 12 RHVQVQGLRDGTMDERTFFPEASGSSRS-----------------YHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF----------KSTRPTTNKDKE----SETTQKPLHHFFGE-W--TPKNTDSWLDLASNSRIPT 386 R+ Q G R G + ERTFFPEAS S + YH +++ + +SS Q+++ D+ CFVLG D S+R N++++ SE+++K LHHFFGE W ++DSWLDL+S+SR+ T Sbjct: 244 RYFQGIGERVGGVGERTFFPEASRSFQDSPYHHHQQPLATVMNDPYHHCSTDHNKIDHHHTYSSSSSSQHLHHDHDH-------RQQQCFVLGADMFNKPTRSVLANSSRQDQNQEEDEKDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDT 395
BLAST of GT622788 vs. TrEMBL
Match: Q8L8A6_ARATH (Transcription activator OS=Arabidopsis thaliana GN=GRF5 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.152e-9 Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 3 Query: 12 RHVQVQGLRDGTMDERTFFPEASGSSRS-----------------YHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF----------KSTRPTTNKDKE----SETTQKPLHHFFGE-W--TPKNTDSWLDLASNSRIPT 386 R+ Q G R G + ERTFFPEAS S + YH +++ + +SS Q+++ D+ CFVLG D S+R N++++ SE+++K LHHFFGE W ++DSWLDL+S+SR+ T Sbjct: 244 RYFQGIGERVGGVGERTFFPEASRSFQDSPYHHHQQPLATVMNDPYHHCSTDHNKIDHHHTYSSSSSSQHLHHDHDH-------RQQQCFVLGADMFNKPTRSVLANSSRQDQNQEEDEKDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDT 395
BLAST of GT622788 vs. TrEMBL
Match: C0SVA9_ARATH (Putative uncharacterized protein At3g13960 (Fragment) OS=Arabidopsis thaliana GN=At3g13960 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.152e-9 Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 3 Query: 12 RHVQVQGLRDGTMDERTFFPEASGSSRS-----------------YHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF----------KSTRPTTNKDKE----SETTQKPLHHFFGE-W--TPKNTDSWLDLASNSRIPT 386 R+ Q G R G + ERTFFPEAS S + YH +++ + +SS Q+++ D+ CFVLG D S+R N++++ SE+++K LHHFFGE W ++DSWLDL+S+SR+ T Sbjct: 243 RYFQGIGERVGGVGERTFFPEASRSFQDSPYHHHQQPLATVMNDPYHHCSTDHNKIDHHHTYSSSSSSQHLHHDHDH-------RQQQCFVLGADMFNKPTRSVLANSSRQDQNQEEDEKDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDT 394
BLAST of GT622788 vs. TrEMBL
Match: D7L2A7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_478803 PE=4 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 3.706e-8 Identity = 56/163 (34.36%), Postives = 78/163 (47.85%), Query Frame = 3 Query: 12 RHVQVQGLRDGTMDERTFFPEASGSSRSYHDS--YQQQQQLNSFKS-------------------SYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF----------KSTRPTTNKDKE----SETTQKPLHHFFGE-W--TPKNTDSWLDLASNSRIPT 386 R+ Q G R G + ERTFFPEAS RS+ DS + QQ L + + S +SS Q+++ D CFVLG D S+R N+++E SE+++K LHHFFGE W ++DSWLDL+S+ R+ T Sbjct: 241 RYFQGIGERVG-VGERTFFPEAS---RSFQDSPYHHHQQPLTTVMNDPYHHCSTDHKIDHHHHTYSSSSSSQQHLHHDQEHDHRQQQQ---QCFVLGADMFNKPTRSVLTNSSRQDQNQEEEEKDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHPRLDT 396
BLAST of GT622788 vs. TAIR peptide
Match: AT3G13960.1 (| Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397) HSP 1 Score: 67.0106 bits (162), Expect = 8.645e-12 Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 3 Query: 12 RHVQVQGLRDGTMDERTFFPEASGSSRS-----------------YHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF----------KSTRPTTNKDKE----SETTQKPLHHFFGE-W--TPKNTDSWLDLASNSRIPT 386 R+ Q G R G + ERTFFPEAS S + YH +++ + +SS Q+++ D+ CFVLG D S+R N++++ SE+++K LHHFFGE W ++DSWLDL+S+SR+ T Sbjct: 244 RYFQGIGERVGGVGERTFFPEASRSFQDSPYHHHQQPLATVMNDPYHHCSTDHNKIDHHHTYSSSSSSQHLHHDHDH-------RQQQCFVLGADMFNKPTRSVLANSSRQDQNQEEDEKDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDT 395 The following BLAST results are available for this feature:
BLAST of GT622788 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 8
BLAST of GT622788 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT622788 ID=GT622788; Name=GT622788; organism=Lens culinaris; type=EST; length=600bpback to top |