GT622788

EST Overview
NameGT622788
Unique NameGT622788
TypeEST
OrganismLens culinaris (lentil)
Sequence length600
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT622788 vs. TrEMBL
Match: B9S5R0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0652480 PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.311e-26
Identity = 67/120 (55.83%), Postives = 84/120 (70.00%), Query Frame = 3
Query:   30 GLRDGTMDERTFFPEAS-GSSRSYHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDFKSTRPTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPT 386
            G+R+G +DERTFFPEAS GSSR+  DSYQQ   ++S+KS Y+  QF+++ D   +          HCFVLGTDFKS+   T K ++    QKPLHHFFGEW PKN+DSWLDLAS SR+ T
Sbjct:  224 GMREG-IDERTFFPEASSGSSRNLQDSYQQLT-MSSYKS-YSHPQFESLADSTSKHQQEQPQ---HCFVLGTDFKSSTTRTIKLEKESEAQKPLHHFFGEWPPKNSDSWLDLASTSRLHT 337          
BLAST of GT622788 vs. TrEMBL
Match: D7TZT0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00016762001 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.475e-20
Identity = 58/111 (52.25%), Postives = 69/111 (62.16%), Query Frame = 3
Query:   30 GLRDGTMDERTFFPEASGSSRSYHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDFKSTRPTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDL 362
            G+R+G +DER FFPEASG+ R  HDSY      +S    Y+  Q+Q+   DNP+          HCFVLGTDFKS+RP   K +     QKPLHHFFGEW  KN DSWLDL
Sbjct:  223 GMREG-VDERAFFPEASGTVRGLHDSYTPLTMSSS--KGYSHFQYQS-PADNPKQQQEQQEQQ-HCFVLGTDFKSSRPI--KVERDGEAQKPLHHFFGEWPLKNRDSWLDL 326          
BLAST of GT622788 vs. TrEMBL
Match: B9GKU6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_548577 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.513e-20
Identity = 59/129 (45.74%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    9 RRHVQVQGLRDGTMDERTFFPEASGSSRSYHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDFKSTRPTTNKDKESET-TQKPLHHFFGEWTPKNTDSWLDLASNSRIPTDE 392
            + H    G+R+  +DER FFP+  GS+R   DSY Q   ++S+K  Y+ SQFQ   D +            HCFVLGTD   +  T +   E ET T KPLHHFF EW PK+ DSWLDLAS+SR  T +
Sbjct:  217 KEHRYYHGMRED-VDERAFFPDGLGSARGVQDSYNQLT-MSSYKG-YSLSQFQTFADTSKEEQQQPGQ---HCFVLGTDIIKSSATRSIKLEKETETLKPLHHFFDEWEPKDADSWLDLASSSRPHTSD 339          
BLAST of GT622788 vs. TrEMBL
Match: B9GW17_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_645840 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.951e-18
Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 3
Query:   48 MDERTFFPEASGSSRSYHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF-KSTRPTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSR 377
            MD R FFP+A GS+R   DSY Q   ++S+K  Y+ SQFQ+  + +            HCFVLGTD  KS+   + K ++   TQKPLHHFFGEW PK+ DS LDLAS+S+
Sbjct:    1 MDGRAFFPDALGSARGVQDSYNQLT-MSSYKG-YSQSQFQSFANTSKEEQQQPGH---HCFVLGTDIIKSSATRSIKLEKEPETQKPLHHFFGEWEPKDADSGLDLASSSK 106          
BLAST of GT622788 vs. TrEMBL
Match: Q9LVK4_ARATH (Gb|AAF17567.1 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.152e-9
Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 3
Query:   12 RHVQVQGLRDGTMDERTFFPEASGSSRS-----------------YHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF----------KSTRPTTNKDKE----SETTQKPLHHFFGE-W--TPKNTDSWLDLASNSRIPT 386
            R+ Q  G R G + ERTFFPEAS S +                  YH       +++   +  +SS  Q+++ D+             CFVLG D            S+R   N++++    SE+++K LHHFFGE W     ++DSWLDL+S+SR+ T
Sbjct:  244 RYFQGIGERVGGVGERTFFPEASRSFQDSPYHHHQQPLATVMNDPYHHCSTDHNKIDHHHTYSSSSSSQHLHHDHDH-------RQQQCFVLGADMFNKPTRSVLANSSRQDQNQEEDEKDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDT 395          
BLAST of GT622788 vs. TrEMBL
Match: Q8L8A6_ARATH (Transcription activator OS=Arabidopsis thaliana GN=GRF5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.152e-9
Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 3
Query:   12 RHVQVQGLRDGTMDERTFFPEASGSSRS-----------------YHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF----------KSTRPTTNKDKE----SETTQKPLHHFFGE-W--TPKNTDSWLDLASNSRIPT 386
            R+ Q  G R G + ERTFFPEAS S +                  YH       +++   +  +SS  Q+++ D+             CFVLG D            S+R   N++++    SE+++K LHHFFGE W     ++DSWLDL+S+SR+ T
Sbjct:  244 RYFQGIGERVGGVGERTFFPEASRSFQDSPYHHHQQPLATVMNDPYHHCSTDHNKIDHHHTYSSSSSSQHLHHDHDH-------RQQQCFVLGADMFNKPTRSVLANSSRQDQNQEEDEKDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDT 395          
BLAST of GT622788 vs. TrEMBL
Match: C0SVA9_ARATH (Putative uncharacterized protein At3g13960 (Fragment) OS=Arabidopsis thaliana GN=At3g13960 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.152e-9
Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 3
Query:   12 RHVQVQGLRDGTMDERTFFPEASGSSRS-----------------YHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF----------KSTRPTTNKDKE----SETTQKPLHHFFGE-W--TPKNTDSWLDLASNSRIPT 386
            R+ Q  G R G + ERTFFPEAS S +                  YH       +++   +  +SS  Q+++ D+             CFVLG D            S+R   N++++    SE+++K LHHFFGE W     ++DSWLDL+S+SR+ T
Sbjct:  243 RYFQGIGERVGGVGERTFFPEASRSFQDSPYHHHQQPLATVMNDPYHHCSTDHNKIDHHHTYSSSSSSQHLHHDHDH-------RQQQCFVLGADMFNKPTRSVLANSSRQDQNQEEDEKDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDT 394          
BLAST of GT622788 vs. TrEMBL
Match: D7L2A7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_478803 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.706e-8
Identity = 56/163 (34.36%), Postives = 78/163 (47.85%), Query Frame = 3
Query:   12 RHVQVQGLRDGTMDERTFFPEASGSSRSYHDS--YQQQQQLNSFKS-------------------SYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF----------KSTRPTTNKDKE----SETTQKPLHHFFGE-W--TPKNTDSWLDLASNSRIPT 386
            R+ Q  G R G + ERTFFPEAS   RS+ DS  +  QQ L +  +                   S +SS  Q+++ D              CFVLG D            S+R   N+++E    SE+++K LHHFFGE W     ++DSWLDL+S+ R+ T
Sbjct:  241 RYFQGIGERVG-VGERTFFPEAS---RSFQDSPYHHHQQPLTTVMNDPYHHCSTDHKIDHHHHTYSSSSSSQQHLHHDQEHDHRQQQQ---QCFVLGADMFNKPTRSVLTNSSRQDQNQEEEEKDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHPRLDT 396          
BLAST of GT622788 vs. TAIR peptide
Match: AT3G13960.1 (| Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397)

HSP 1 Score: 67.0106 bits (162), Expect = 8.645e-12
Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 3
Query:   12 RHVQVQGLRDGTMDERTFFPEASGSSRS-----------------YHDSYQQQQQLNSFKSSYASSQFQNINDDNPRXXXXXXXXXXHCFVLGTDF----------KSTRPTTNKDKE----SETTQKPLHHFFGE-W--TPKNTDSWLDLASNSRIPT 386
            R+ Q  G R G + ERTFFPEAS S +                  YH       +++   +  +SS  Q+++ D+             CFVLG D            S+R   N++++    SE+++K LHHFFGE W     ++DSWLDL+S+SR+ T
Sbjct:  244 RYFQGIGERVGGVGERTFFPEASRSFQDSPYHHHQQPLATVMNDPYHHCSTDHNKIDHHHTYSSSSSSQHLHHDHDH-------RQQQCFVLGADMFNKPTRSVLANSSRQDQNQEEDEKDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDT 395          
The following BLAST results are available for this feature:
BLAST of GT622788 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 8
Match NameE-valueIdentityDescription
B9S5R0_RICCO2.311e-2655.83Putative uncharacterized protein OS=Ricinus commun... [more]
D7TZT0_VITVI2.475e-2052.25Whole genome shotgun sequence of line PN40024, sca... [more]
B9GKU6_POPTR5.513e-2045.74Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9GW17_POPTR3.951e-1848.65Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q9LVK4_ARATH1.152e-932.08Gb|AAF17567.1 OS=Arabidopsis thaliana PE=4 SV=1[more]
Q8L8A6_ARATH1.152e-932.08Transcription activator OS=Arabidopsis thaliana GN... [more]
C0SVA9_ARATH1.152e-932.08Putative uncharacterized protein At3g13960 (Fragme... [more]
D7L2A7_ARALY3.706e-834.36Putative uncharacterized protein OS=Arabidopsis ly... [more]
back to top
BLAST of GT622788 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G13960.18.645e-1232.08| Symbols: AtGRF5, GRF5 | growth-regulating factor... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 62..71
score
NoneNo IPR availableSEGsegsegcoord: 58..67
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT622788 ID=GT622788; Name=GT622788; organism=Lens culinaris; type=EST; length=600bp
CTTGATAAAGGAGGCATGTTCAAGTTCAAGGGCTAAGAGATGGGACTATG
GATGAGAGAACTTTCTTTCCAGAAGCTTCTGGTTCTTCTAGGAGTTATCA
TGATTCATATCAACAACAACAACAACTGAATTCCTTTAAGTCATCATATG
CAAGCTCACAATTTCAGAACATCAATGATGATAATCCAAGACAGCAGCAA
CAACAGCAGCAACAAGAACAACACTGTTTTGTTTTAGGCACAGACTTCAA
ATCAACAAGACCAACAACAAACAAGGACAAAGAAAGTGAGACAACTCAGA
AACCACTTCATCATTTCTTTGGTGAGTGGACACCAAAGAACACAGATTCT
TGGTTAGATCTTGCTTCCAACTCCAGAATCCCAACAGATGAATGAAGTTA
TTATTTTGATGATAATGAGTTGATGGTGGATAGTGAATACTGCCAAGAAA
GAGTTAAAGATCAAGATGTTATGTGTGGCTGGGGTGAATTTTCTTTAGCA
AAAGGTGTGATCTTTATTGTGTTATGTAGGGGACCACATTAAGATTTTTG
TGTCATTTTATTTATAATATGTTTGTTTCTTCAACATGAAGAAAAGTTTT
back to top