GT622861

EST Overview
NameGT622861
Unique NameGT622861
TypeEST
OrganismLens culinaris (lentil)
Sequence length707
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
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BLAST of GT622861 vs. TrEMBL
Match: O04238_VICFA (Transcription factor OS=Vicia faba var. minor PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.457e-42
Identity = 96/133 (72.18%), Postives = 97/133 (72.93%), Query Frame = 1 
Query:    1 LQQTLNPRAHPPMQPLNAPRSHIQPGVXXXXXXXXXXXXXXXRVMASSHVARQGEQRGQPVQAVSRTDELFDSTPDQNWRPTSRMRGSLSGQQLTDDVRQRLIMPSSQEA---XXXXXXXXXXXTTSQLNGLI 390
            LQQTLNPRAH PMQPLNA RSH Q GV               RVMASSHVARQGEQRG PVQAVSRTDELF+S PDQNWRPTSRMRGSLSGQQLTDDVRQRLIMPSSQEA              TTSQLN LI
Sbjct:  684 LQQTLNPRAHTPMQPLNAQRSHTQQGVSQTNAAGGAANSQQARVMASSHVARQGEQRGPPVQAVSRTDELFNSQPDQNWRPTSRMRGSLSGQQLTDDVRQRLIMPSSQEAQNSRPQGPQPQPGRTTSQLNVLI 816
The following BLAST results are available for this feature:
BLAST of GT622861 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
O04238_VICFA7.457e-4272.18Transcription factor OS=Vicia faba var. minor PE=2... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 28..42
score: NAcoord: 111..121
score: NAcoord: 131..143
score
NoneNo IPR availableSEGsegsegcoord: 64..77
score: NAcoord: 88..101
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT622861 ID=GT622861; Name=GT622861; organism=Lens culinaris; type=EST; length=707bp
CTGCAGCAAACTCTGAATCCCCGGGCGCATCCACCAATGCAACCATTAAA
TGCCCCACGGTCTCACATTCAGCCAGGGGTTTCACAAGCTAATGCAGCTG
GAAGTGCAGCAAATAGCCAACAAGCCAGGGTTATGGCTTCATCACATGTT
GCCAGACAAGGAGAGCAAAGAGGACAGCCAGTACAGGCAGTTTCTAGGAC
TGACGAATTGTTCGATTCAACACCAGACCAGAACTGGCGTCCTACTTCGC
GAATGCGTGGAAGTCTCTCAGGTCAGCAGCTTACTGATGACGTTAGGCAG
CGATTAATTATGCCATCATCACAAGAAGCTCAAAGACCACAAGGTCCACC
ACAACCAGGCCGAACAACATCTCAACTGAATGGACTCATTGCAAACAATA
GGAATGCTCACAATAATCCTCCGAGACCGTAATATTGTTTTGGAAGCTTT
TACCTGTGCATGCTTGAAAAGACAAATATTCCATATTAGATAGCTCAGGG
TCATTGTCTTATGTGCATAGGTTGTAAATATGCTCAGCAAAAGATGGGGA
AAACACAGGAACATGTTGCATTCAGGTATTTTGAATATAACTACGGAATT
GAAAGGGAAACAAAATCCTATACGTTAATATGGGGATTGGGTGAAAGCAG
CTTAGTGAAAAACCACGATGACAGAATCTGATATAATACTGTATATGCAC
TTAAAAG
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