GT624218

EST Overview


Name	GT624218
Unique Name	GT624218
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	406

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

[Close]

BLAST of GT624218 vs. TrEMBL
Match: C6SXJ8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.776e-13
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 2

Query:   29 MNHNINQQQSPVIAYPAIGEKNHQVAPPPPMGYPTKDD--PQQTLPVKTTSRGDGFWK 196
            MNH   QQQSPV AYPA+ + N   APPPP+GYPTKDD   QQ +P+KT++RGDGFWK
Sbjct:    1 MNH---QQQSPVTAYPAVSQSN-PAAPPPPVGYPTKDDVPSQQNVPIKTSTRGDGFWK 54

[Close]

BLAST of GT624218 vs. TrEMBL
Match: Q2HTZ6_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC149577g11v1 PE=4 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.191e-9
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 2

Query:   38 NINQQQSPVIAYPAIGEKN---HQVAPPPPMGYPTKDD----PQQTLPVKTTSRGDGFWK 196
            N NQQ++P ++YP  GE       V  PPPMGYP+KD     PQQ +P +TTSRGDGFWK
Sbjct:    5 NNNQQKAPSVSYPPPGEAYSTPQYVTAPPPMGYPSKDGSAGYPQQRIPDQTTSRGDGFWK 64

[Close]

BLAST of GT624218 vs. TrEMBL
Match: C6SYK8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.004e-8
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 2

Query:   29 MNHNINQQQSPVIAYPAIGEKNHQ---VAPPPPMGYPTKDDP-QQTLPVKTTSRGDGFWK 196
            MNH+ N QQ   ++Y   G+ N     V  PPPMGYP+K+   +Q +P +TTSRGDGFWK
Sbjct:    1 MNHSSNNQQETPLSYLPEGQANSSAPYVTAPPPMGYPSKNGSIEQRVPEETTSRGDGFWK 60

The following BLAST results are available for this feature:

BLAST of GT624218 vs. TrEMBL

BLAST of GT624218 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 3


Match Name	E-value	Identity	Description
C6SXJ8_SOYBN	1.776e-13	65.52	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q2HTZ6_MEDTR	1.191e-9	55.00	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6SYK8_SOYBN	5.004e-8	50.00	Putative uncharacterized protein OS=Glycine max PE...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 7..22 score: NAcoord: 30..47 score
None	No IPR available	SEG	seg	seg	coord: 62..77 score
None	No IPR available	SEG	seg	seg	coord: 39..48 score
None	No IPR available	SEG	seg	seg	coord: 12..27 score

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT624218 ID=GT624218; Name=GT624218; organism=Lens culinaris; type=EST; length=406bp
CTTTCCTTTTTAAAAAAAATCAATAGCAATGAATCACAATATCAATCAAC
AACAATCTCCTGTGATTGCATATCCAGCAATAGGTGAGAAGAACCACCAA
GTTGCTCCACCACCACCTATGGGTTATCCCACAAAAGATGATCCCCAACA
AACTCTTCCAGTCAAAACAACTAGTAGGGGTGATGGTTTCTGGAAAGGAT
GTTGTGCTGGATTATGTTGTTGTTGTGCCCTGGATTGCTGCCTCTGATTG
AAGATCATGGGTTTATTGTTTTGTGCTTGTCCTCATGGTTTTTCTTTATC
TTATTGTGTTCTTTTTTCTTCCTTTACCAAACTAGTATTTTTGTAGCTTG
TCTTATAAGGATCTTTGTATCATATATGGGATAGCAAAAACTCATTGTAT
CGATTC

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