GT624395

EST Overview
NameGT624395
Unique NameGT624395
TypeEST
OrganismLens culinaris (lentil)
Sequence length421
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT624395 vs. TrEMBL
Match: C6TFZ6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.788e-28
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 2
Query:    2 NSSNQSYRVRDSSSQTSSAGCGGKLDGVAMWFVNGVTMAFFASLNRCSCIRIATKEDVEDANDLPLMFDDGNLRHDG-VXXXXXXXXXXXGKGEKSGAVLVD 304
            +SS+ S   R SS+Q SS+ CG K DGVAMWF+NGVT AFFASLNRCSCIRIAT+ED +DANDLPLM +DGNLRHDG V           GKG+K+ AVLVD
Sbjct:    7 SSSSSSDESRVSSTQASSSACG-KFDGVAMWFINGVTTAFFASLNRCSCIRIATEEDGDDANDLPLMLNDGNLRHDGVVAVVGTASRRRTGKGKKNEAVLVD 107          
BLAST of GT624395 vs. TrEMBL
Match: A9PCJ9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_823861 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.514e-20
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 2
Query:    5 SSNQSYRVRDSSSQTSSAGCGGKLDGVAMWFVNGVTMAFFASLNRCSCIRIATKEDVEDANDLPLMFDDGNLRH 226
            S++   RVR +SS  SS GCG KLDGVAMWF+NGV  AFFASL RCSCIRIAT++D ++AND PL+ +DGN+RH
Sbjct:   17 SNSVEPRVRTTSSHGSSPGCG-KLDGVAMWFINGVASAFFASLERCSCIRIATEDDGDEANDAPLILNDGNMRH 89          
BLAST of GT624395 vs. TrEMBL
Match: A9PE30_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_816443 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.673e-19
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 2
Query:    5 SSNQSYRVRDSSSQTSSAGCGGKLDGVAMWFVNGVTMAFFASLNRCSCIRIATKEDVEDANDLPLMFDDGNLRH 226
            S++   RVR S+S  SS GCG KLDGVAMWF+NGV  AFFAS+ RCSCIRIAT++D ++AND PL+  DGN RH
Sbjct:   18 SNSVEPRVRTSTSHGSSPGCG-KLDGVAMWFINGVAGAFFASMERCSCIRIATEDDGDEANDAPLILHDGNTRH 90          
BLAST of GT624395 vs. TrEMBL
Match: B9IBM2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_774122 PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.018e-8
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 2
Query:   23 RVRDSSSQTSSAGCGGKLDGVAMWFVNGVTMAFFASLNRCSCIRIATKEDVEDANDLPLMFDDG 214
            +V+  +   S A     LDGVA W +NGV   FF SL RCSCI I TK+D ED++ LPL+  +G
Sbjct:   26 KVQPPAIPNSRAPACRMLDGVAAWLINGVATIFFTSLERCSCIYIDTKDDSEDSSHLPLIHYEG 89          
BLAST of GT624395 vs. TrEMBL
Match: B9R6W7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1586620 PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.329e-8
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = -2
Query:   67 PSSNINGKSLASSTSSLVAMRMQEQRFKEAKKAIVTPLTNHIATPSSFP 213
            PS  I G SLASS SS VA+RMQE    +AK A+ TP  NHIATPSSFP
Sbjct:    3 PSLRIRGASLASSQSSSVAIRMQEHLSNDAKNALATPFMNHIATPSSFP 51          
BLAST of GT624395 vs. TrEMBL
Match: C5WPP6_SORBI (Putative uncharacterized protein Sb01g012130 OS=Sorghum bicolor GN=Sb01g012130 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.961e-8
Identity = 38/93 (40.86%), Postives = 47/93 (50.54%), Query Frame = 2
Query:   29 RDSSSQTSSAGCGGK-LDGVAMWFVNGVTMAFFASLNRCSCIRIATKEDVED----ANDLPLMFDDGNLRHDGVXXXXXXXXXXXGKGEKSGA 292
            R  SS     GCG   LD VA W   G+   FFASL RCSC  + T +D+ D     ++ PLMFDDGN    GV           GKG ++G+
Sbjct:   31 RTPSSAGQGHGCGWPPLDRVAGWVGGGIAAVFFASLERCSCFNVRTYDDLLDDEQRDSEAPLMFDDGNGNSTGV---ERRGARRCGKGRRTGS 120          
The following BLAST results are available for this feature:
BLAST of GT624395 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
C6TFZ6_SOYBN9.788e-2865.69Putative uncharacterized protein OS=Glycine max PE... [more]
A9PCJ9_POPTR1.514e-2066.22Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PE30_POPTR1.673e-1964.86Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9IBM2_POPTR1.018e-848.44Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9R6W7_RICCO1.329e-865.31Putative uncharacterized protein OS=Ricinus commun... [more]
C5WPP6_SORBI2.961e-840.86Putative uncharacterized protein Sb01g012130 OS=So... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 79..89
score
NoneNo IPR availableSEGsegsegcoord: 13..23
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624395 ID=GT624395; Name=GT624395; organism=Lens culinaris; type=EST; length=421bp
GAATTCCTCTAATCAGTCTTACAGGGTCCGCGACTCCTCGAGTCAAACCT
CATCTGCAGGCTGCGGTGGAAAGCTCGATGGGGTGGCTATGTGGTTCGTC
AACGGCGTTACAATGGCTTTTTTTGCTTCTTTGAATCGTTGCTCTTGCAT
CCGCATCGCTACTAAAGAAGACGTAGAAGATGCCAACGATTTGCCGTTGA
TGTTCGACGACGGTAATCTACGCCATGATGGTGTCGCCGCCGCTGCCACT
ACCAGCCGGAGAAGGACCGGGAAAGGGGAGAAAAGTGGAGCTGTACTTGT
CGATTAACACTAATCGTGATGATGAGTTAATGTCTCTTTAATTTCATGGT
AAGTCATGTTATAAATATTAATAATATATTATATATTACATATATAATAC
TGCTACATATGTTAAAGTTTT
back to top