GT624504

EST Overview
NameGT624504
Unique NameGT624504
TypeEST
OrganismLens culinaris (lentil)
Sequence length792
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT624504 vs. TrEMBL
Match: B9NFD7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_597190 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.327e-16
Identity = 60/190 (31.58%), Postives = 100/190 (52.63%), Query Frame = 2
Query:  266 FGNSSYGQLQS-SLPMGHLRVDPSQLQTPQDAFPMSSQMPIPSVHNELSTDSMNLHLKVSQDASYTVGSKGSTMRLPHHVFGDTGLQNNWAPTPAE--QINENHKEPPAPYVESS-LVHDLNSSKEEHHTVQDSV----------FDYTAKPSKQVLDSA--LRSDGVAIPAISVHSQHDAPPVDKSSTG 787
            FG  SYG+LQ+ S+  G+  VDPS+LQ  ++      Q+P+ +V +E +T  +NL  +V+ D +Y V S+ S++ LPH +FG+  LQ +W  +P +   I+     P +P+V+SS L   +N S  E     + V           D+T++   +  +SA  L S+  A  ++   S   + PV  + TG
Sbjct:   10 FGEPSYGKLQTASIATGNAPVDPSRLQLSKELLTTGLQLPVSNVQDEHTTSLLNLPPQVTHDVTYNVNSEASSLHLPHQMFGNVNLQKSWGTSPGKLGDIHPKESLPASPFVDSSPLPGRMNKSSHEASVASEPVPSSDFRVPLSLDHTSEVPWRTEESAKVLVSEATA-DSVHQDSHEISDPVASAGTG 198          
BLAST of GT624504 vs. TrEMBL
Match: B9GRZ8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_756442 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.327e-16
Identity = 60/190 (31.58%), Postives = 100/190 (52.63%), Query Frame = 2
Query:  266 FGNSSYGQLQS-SLPMGHLRVDPSQLQTPQDAFPMSSQMPIPSVHNELSTDSMNLHLKVSQDASYTVGSKGSTMRLPHHVFGDTGLQNNWAPTPAE--QINENHKEPPAPYVESS-LVHDLNSSKEEHHTVQDSV----------FDYTAKPSKQVLDSA--LRSDGVAIPAISVHSQHDAPPVDKSSTG 787
            FG  SYG+LQ+ S+  G+  VDPS+LQ  ++      Q+P+ +V +E +T  +NL  +V+ D +Y V S+ S++ LPH +FG+  LQ +W  +P +   I+     P +P+V+SS L   +N S  E     + V           D+T++   +  +SA  L S+  A  ++   S   + PV  + TG
Sbjct:  960 FGEPSYGKLQTASIATGNAPVDPSRLQLSKELLTTGLQLPVSNVQDEHTTSLLNLPPQVTHDVTYNVNSEASSLHLPHQMFGNVNLQKSWGTSPGKLGDIHPKESLPASPFVDSSPLPGRMNKSSHEASVASEPVPSSDFRVPLSLDHTSEVPWRTEESAKVLVSEATA-DSVHQDSHEISDPVASAGTG 1148          
BLAST of GT624504 vs. TrEMBL
Match: B9PEA2_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_795737 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.841e-16
Identity = 47/134 (35.07%), Postives = 78/134 (58.21%), Query Frame = 2
Query:  266 FGNSSYGQLQSSLPMGHLRVDPSQLQTPQDAFPMSSQMPIPSVHNELSTDSMNLHLKVSQDASYTVGSKGSTMRLPHHVFGDTGLQNNWAPTPAE--QINENHKEPPAPYVESS-LVHDLNSSKEEHHTVQDSV 658
            FG  SYGQLQ++       +DPS+LQ  ++ FPM  Q+P+ +V +E +T  +NL  +V+ D +  V S+ S++ LPH V G+  LQ +W   P +  +I++    P +P+V+SS L   +N S ++     + V
Sbjct:   71 FGEPSYGQLQTAAIATENALDPSRLQPSKELFPMGLQLPVSNVQDEHTTSFLNLPPQVNPDVTCNVNSETSSLHLPHQVLGNANLQKSWGTIPGKISEIHQKDSLPASPFVDSSPLPRLMNKSTQKSSLAPEPV 204          
BLAST of GT624504 vs. TrEMBL
Match: B9R7S6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593980 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.155e-15
Identity = 49/165 (29.70%), Postives = 93/165 (56.36%), Query Frame = 2
Query:  266 FGNSSYGQLQSS-LPMGHLRVDPSQLQTPQDAFPMSSQMPIPSVHNELSTDSMNLHLKVSQDASYTVGSKGSTMRLPHHVFGDTGLQNNWAPTPAEQINENHKEPPAPYVESSLVHDLNSSKEEHHTVQDSVFDYTAKPSKQVLDSALRSDGVAIPAISVHSQHD 757
            FG S YGQ  +S +  G++ VDPS+LQ  ++   ++SQ+P+ ++ +E +   MNLH +V+Q   Y V S+ S+ + PH + G+   QNNW  T  +QI+E H+E     + +  +  ++ S +E  ++ + +   +A   +++ + + R++ +   AI   S  D
Sbjct:  929 FGESPYGQFHTSTIATGNVSVDPSRLQPSKEMLQIASQIPVSNLQDEHTASLMNLHAQVTQGVGYNVNSEASSFQFPHQMLGNVNGQNNWDTTLPQQISEIHQES----LLAPSLGMMDKSSQESSSMHEPILPLSA---ERISEDSWRTEEIPEVAIQGASADD 1086          
The following BLAST results are available for this feature:
BLAST of GT624504 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
B9NFD7_POPTR2.327e-1631.58Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9GRZ8_POPTR2.327e-1631.58Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9PEA2_POPTR8.841e-1635.07Predicted protein (Fragment) OS=Populus trichocarp... [more]
B9R7S6_RICCO1.155e-1529.70Putative uncharacterized protein OS=Ricinus commun... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 26..88
score
NoneNo IPR availableSEGsegsegcoord: 1..19
score
NoneNo IPR availableSEGsegsegcoord: 30..63
score
NoneNo IPR availableSEGsegsegcoord: 10..32
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624504 ID=GT624504; Name=GT624504; organism=Lens culinaris; type=EST; length=792bp
GGATAACCCAGCTAGTTCTTTGACAGCAGAGAAGCTACTTTCTTCTGGTT
TAGCTCAAGATCCACAAATGATGAATCTGTTGCAACAGCAATACTTGTTG
CAGTTACATTCTCAAGCTGCTGCTTCAGCACCACAGCTGCCCCTGTTAGA
TAAACTCCTGTTGCTAAAGCAGCAGCAGAAGCAGGAGGAGCAGCAGATGT
TCTTACGGCAACAGCAGCAACAACTGCTTTCCAAAATGTTGCAGGACCAA
CAGTCTAGCCAGCTCTTTGGCAATTCATCATATGGACAGTTGCAAAGTTC
ATTACCAATGGGACATTTGCGTGTTGATCCTTCTCAACTTCAAACCCCAC
AAGATGCTTTTCCTATGAGCTCCCAGATGCCAATTCCTAGTGTGCATAAT
GAACTCAGTACTGATTCTATGAATTTGCATCTTAAAGTCAGCCAAGATGC
AAGTTATACAGTTGGCAGTAAAGGGTCTACCATGCGTCTGCCTCATCACG
TATTTGGGGATACTGGTCTTCAGAATAACTGGGCTCCTACTCCCGCTGAG
CAAATTAATGAAAATCATAAGGAACCTCCAGCTCCTTATGTTGAGAGTTC
ACTTGTGCATGACCTGAACAGCTCGAAAGAGGAACACCACACTGTGCAGG
ATTCTGTTTTTGACTATACTGCCAAGCCATCAAAGCAGGTACTGGACAGT
GCCTTAAGATCTGATGGTGTTGCCATACCAGCAATATCTGTACATTCACA
GCATGATGCACCTCCCGTTGATAAATCTTCAACAGGATCTAG
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