GT624566

EST Overview
NameGT624566
Unique NameGT624566
TypeEST
OrganismLens culinaris (lentil)
Sequence length628
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT624566 vs. TrEMBL
Match: C6TJ40_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.504e-31
Identity = 67/94 (71.28%), Postives = 75/94 (79.79%), Query Frame = 2
Query:    2 FRYDYNDWKIMKDLVPDGKELMPHRIQHSTVDGSQAEVDGDNPAQALPVTPIRKISRNRGRVLQEESVVEESPECDDEDASREAVIRRCKRKLH 283
            FRYDY DWK+MKD+VPDGKELMP R Q  TV  SQ  +  DN   AL VTPIRK+SRNRGRV+QEE VVEESPEC++E+ASR   IRRCKRKLH
Sbjct:  263 FRYDYQDWKLMKDVVPDGKELMPRRTQCCTVVASQEGMSDDNFQPALAVTPIRKLSRNRGRVVQEEGVVEESPECNEENASRAGAIRRCKRKLH 356          
BLAST of GT624566 vs. TrEMBL
Match: B9GYV4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_758363 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.854e-19
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 2
Query:    2 FRYDYNDWKIMKDLVPDGKELMPHRIQHSTVDGSQAEVDGDNPAQALPVTPIRKISRNRGRVLQEES-VVEESPECDDEDASREAVIRRCKRKL 280
            FR+D+ DWK+MK +VPDG+ELMPHR    +   SQ E D +N       TPIRK SRNRG V+QE+S VVE+SP+ DD+  +R   + RC+RKL
Sbjct:  302 FRFDFRDWKLMKGVVPDGEELMPHR---ESSGASQVEPDANNTEGTRSRTPIRKFSRNRGLVVQEDSVVVEDSPDIDDDVDARATGLMRCRRKL 392          
BLAST of GT624566 vs. TrEMBL
Match: D7TIF2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033510001 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.264e-16
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2
Query:    2 FRYDYNDWKIMKDLVPDGKELMPHRIQHSTVDGSQAE-VDGDNPAQALPVTPIRKISRNRGRVLQEESVVEESPECDDEDASREAVIRRCKRK 277
            FR+D+ DWK+M   V  G+ELMP R   +  + SQ + V  +  A A P TPIRK+SRNRG VLQE++VVE+SPE DD   +R AVIR+ K K
Sbjct:  357 FRFDFKDWKLMATSVGAGEELMPQRNSVNLPNNSQTDSVAEECEAAAAPTTPIRKLSRNRGLVLQEQAVVEDSPESDDA-GTRAAVIRKGKGK 448          
BLAST of GT624566 vs. TrEMBL
Match: D7KHN1_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_474228 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.520e-15
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 2
Query:    2 FRYDYNDWKIMKDLVPDGKELMPHRIQHSTVDGSQAEVDGDNPAQALPVTPIRKISRNRGRVLQEESVVEESPECDD-EDASREAVIRRCKRKL 280
            FR D+ DWK+M ++VP G+ELMPHR   + V  S       +  Q    TPIRK+SRNRG V+QEE+VVEE    +D  D + +   RRCKRKL
Sbjct:  314 FRLDFKDWKLMSEMVPLGQELMPHR--ETAVASSSCPAASADFTQDTQTTPIRKLSRNRGLVVQEETVVEEETVVEDTPDTNGDETRRRCKRKL 405          
BLAST of GT624566 vs. TrEMBL
Match: Q9C689_ARATH (Putative uncharacterized protein At1g51130 OS=Arabidopsis thaliana GN=At1g51130 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.282e-14
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 2
Query:    2 FRYDYNDWKIMKDLVPDGKELMPHR---IQHSTVDGSQAEVDGDNPAQALPVTPIRKISRNRGRVLQEESVVEESPECDDEDASREAVIRRCKRKL 280
            FR D+ DWK+M ++VP G+ELMPHR   +  S+   + A    D   Q    TPIRK+SRNRG V+QEE+VVE++P     D   +   RRCKR+L
Sbjct:  311 FRLDFKDWKLMSEMVPLGEELMPHRQTAVASSSCPAASAPASADF-TQDTQTTPIRKLSRNRGLVVQEETVVEDTP-----DKEGDGTRRRCKRRL 400          
BLAST of GT624566 vs. TrEMBL
Match: B9SVD8_RICCO (Non-structural maintenance of chromosome element, putative OS=Ricinus communis GN=RCOM_0565760 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.303e-13
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 2
Query:    2 FRYDYNDWKIMKDLVPDGKELMPHRIQHSTVDGSQAEVDGDNPAQALPVTPIRKISRNRGRVLQEESVVEESPECDDEDASREAVIRRCKRKL 280
            FR+D+ DWK+M D+VP G ELMP R    +    +  +   N  +    TPIRK+ RNRG V+QE+SVVE+SPE    +A++     RC+RK+
Sbjct:  305 FRFDFKDWKVMMDMVPQGDELMPDRKNSVSETEPETNISQGNTNR----TPIRKLCRNRGLVVQEDSVVEDSPEI---EAAKGIGSLRCRRKI 390          
BLAST of GT624566 vs. TrEMBL
Match: B4FSE7_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.758e-12
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 2
Query:    2 FRYDYNDWKIMKDLVPDGKELMPHRIQHSTVDGSQAEVDGDNPAQALPVTPIRKISRNRGRVLQEESVVEESPECDDEDASREAVIR 262
            FR+D+ DWK+MK++V +G+EL+PHR   S +     E D  N      +TPIRK++RNRG VLQ+  VVEE+PE +++ + R  + R
Sbjct:  267 FRFDFKDWKLMKEVVTEGEELLPHRTSQSNL--CNEENDQPNLEARAQITPIRKLTRNRGLVLQDH-VVEETPE-ENQASKRRRLFR 349          
BLAST of GT624566 vs. TrEMBL
Match: B9F3U1_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_05737 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.116e-12
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 FRYDYNDWKIMKDLVPDGKELMPHRIQHSTVDGSQAEVDGDNPAQALPVTPIRKISRNRGRVLQEES-VVEESPECDDEDASREAVIR 262
            FR+D+ DWK+M+++VPDG+ELMPHR     +  ++     D P      TPIRK++RNRG V+Q++  VV E+PE     + R  + R
Sbjct:  270 FRFDFKDWKLMQEVVPDGEELMPHR-NPENIPCAEDHDQADPPELCAQRTPIRKLTRNRGLVMQQDQMVVAETPEEKQPTSKRRRLFR 356          
BLAST of GT624566 vs. TrEMBL
Match: B8AJA9_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06217 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.116e-12
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 FRYDYNDWKIMKDLVPDGKELMPHRIQHSTVDGSQAEVDGDNPAQALPVTPIRKISRNRGRVLQEES-VVEESPECDDEDASREAVIR 262
            FR+D+ DWK+M+++VPDG+ELMPHR     +  ++     D P      TPIRK++RNRG V+Q++  VV E+PE     + R  + R
Sbjct:  270 FRFDFKDWKLMQEVVPDGEELMPHR-NPENIPCAEDHDQADPPELCAQRTPIRKLTRNRGLVMQQDQMVVAETPEEKQPTSKRRRLFR 356          
BLAST of GT624566 vs. TrEMBL
Match: B6TF46_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.384e-11
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 2
Query:    2 FRYDYNDWKIMKDLVPDGKELMPHRIQHSTVDGSQAEVDGDNPAQALPVTPIRKISRNRGRVLQEESVVEESPECDDEDASREAVIR 262
            FR+D+ DWK+MK++V +G+EL+PHR   S +     E D  N      +TPIRK++RNRG V Q+  VVEE+PE +++ + R  + R
Sbjct:  267 FRFDFKDWKLMKEVVTEGEELLPHRTSQSNL--CNEENDQPNLEARAQITPIRKLTRNRGLVFQDH-VVEETPE-ENQASKRRRLFR 349          
BLAST of GT624566 vs. TAIR peptide
Match: AT1G51130.1 (| Symbols: | Nse4, component of Smc5/6 DNA repair complex | chr1:18939480-18941560 REVERSE LENGTH=403)

HSP 1 Score: 82.8037 bits (203), Expect = 1.649e-16
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 2
Query:    2 FRYDYNDWKIMKDLVPDGKELMPHR---IQHSTVDGSQAEVDGDNPAQALPVTPIRKISRNRGRVLQEESVVEESPECDDEDASREAVIRRCKRKL 280
            FR D+ DWK+M ++VP G+ELMPHR   +  S+   + A    D   Q    TPIRK+SRNRG V+QEE+VVE++P     D   +   RRCKR+L
Sbjct:  311 FRLDFKDWKLMSEMVPLGEELMPHRQTAVASSSCPAASAPASADF-TQDTQTTPIRKLSRNRGLVVQEETVVEDTP-----DKEGDGTRRRCKRRL 400          
The following BLAST results are available for this feature:
BLAST of GT624566 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6TJ40_SOYBN3.504e-3171.28Putative uncharacterized protein OS=Glycine max PE... [more]
B9GYV4_POPTR6.854e-1953.19Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7TIF2_VITVI9.264e-1652.69Whole genome shotgun sequence of line PN40024, sca... [more]
D7KHN1_ARALY3.520e-1548.94Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q9C689_ARATH2.282e-1446.88Putative uncharacterized protein At1g51130 OS=Arab... [more]
B9SVD8_RICCO4.303e-1344.09Non-structural maintenance of chromosome element, ... [more]
B4FSE7_MAIZE4.758e-1244.83Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
B9F3U1_ORYSJ8.116e-1242.05Putative uncharacterized protein OS=Oryza sativa s... [more]
B8AJA9_ORYSI8.116e-1242.05Putative uncharacterized protein OS=Oryza sativa s... [more]
B6TF46_MAIZE1.384e-1143.68Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
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BLAST of GT624566 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G51130.11.649e-1646.88| Symbols: | Nse4, component of Smc5/6 DNA repair... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 60..80
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624566 ID=GT624566; Name=GT624566; organism=Lens culinaris; type=EST; length=628bp
CTTCAGATATGACTACAATGACTGGAAGATAATGAAGGATCTTGTGCCAG
ATGGCAAAGAGCTAATGCCACATAGGATTCAACACAGCACTGTGGATGGC
TCACAGGCAGAAGTGGATGGTGACAATCCTGCTCAAGCTTTGCCTGTAAC
TCCTATTAGGAAGATATCTCGAAACCGAGGGCGGGTTTTGCAGGAGGAAA
GTGTTGTTGAAGAATCTCCTGAATGTGATGATGAAGATGCTTCTAGAGAG
GCTGTAATCCGAAGGTGTAAGCGGAAACTCCATTAAGAAATTGCATATTA
GGTACCAGATCAACTTAGAATGTACCCTATTAGAGTGTAAATAATTGTAG
ATCTTCAGAAGTACAATTCCTTTTTGACTTTCTTGCAAATGCATAGAATG
CAACCATTCACTCTTTTTAGCCAATCCCACTTACCCTCTGTTTGTAAAGT
CGGTAGATTACTGCTACCGCATGTCCCCAGCCATTCCCACCGTGATTTAT
AGGAGCAGCTATATGTAGCTTTTAAGAAACGTGCGGTGTTACCGTGATTT
CTTTCAAAAGCCAAACATCGGCTCAGTGAGATAAGTCTTTAGTTGTTGTT
GTGGAATGTAGCTTCATCTGCCATCACT
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