GT624755
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT624755 vs. TrEMBL
Match: Q9LKL6_PEA (DEAD box protein P68 OS=Pisum sativum GN=P68 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 8.079e-45 Identity = 110/165 (66.67%), Postives = 115/165 (69.70%), Query Frame = 2 Query: 2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNSRGEGXXXXXXXXXXXF*CLPYI*LMAVANCHLYVAWHILEMGKLSLHVYVLFHTV*RT-LVTGSFLNTI*RASQSCR 493 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKV NIA SRHLGLGAASINIEDKYRFMI ASNSRGEG LP I L+ + YV W ILEM KLSLH YVLFHT+ + LVTGSFL+TI R S CR Sbjct: 464 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIASSRHLGLGAASINIEDKYRFMIAASNSRGEGAEIVHGMIDEVS-DLPPIHLI-----YRYVVWQILEMDKLSLHAYVLFHTLLASKLVTGSFLDTICRISHVCR 622
BLAST of GT624755 vs. TrEMBL
Match: B9SD86_RICCO (Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1164990 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.617e-19 Identity = 55/92 (59.78%), Postives = 62/92 (67.39%), Query Frame = 2 Query: 2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNSRGEG 277 RAGS G ATSFYTDRD+FLV I+KAIAD +SGN VAFATGKV LS+ LG SINIEDKYRFMI +SN++GEG Sbjct: 467 RAGSAGQATSFYTDRDLFLVAQIKKAIADVKSGNTVAFATGKVARRKEREAAASQKEARNDLSKL--LGPTSINIEDKYRFMIASSNTKGEG 556
BLAST of GT624755 vs. TrEMBL
Match: D7SJI2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024552001 PE=4 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.945e-19 Identity = 53/92 (57.61%), Postives = 62/92 (67.39%), Query Frame = 2 Query: 2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNSRGEG 277 RAGSTG ATSFYTDRD+FLV +IRKAIAD SGN VAFATGKV IALS +G S+NIE+KYRFM++ S+ + EG Sbjct: 469 RAGSTGQATSFYTDRDVFLVAHIRKAIADVGSGNTVAFATGKVARKKEREAAAAQKEARIALSNLSLMGPTSLNIEEKYRFMMSPSSIKTEG 560
BLAST of GT624755 vs. TrEMBL
Match: B9INK9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_826310 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.450e-17 Identity = 53/92 (57.61%), Postives = 58/92 (63.04%), Query Frame = 2 Query: 2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNSRGEG 277 RAGSTG ATSFYTDRD+FLV I+KAIAD ESGN VAFATGK ALS+ +G+ INIEDKYRFMI S EG Sbjct: 433 RAGSTGQATSFYTDRDLFLVAQIKKAIADVESGNTVAFATGKAARRKEREAAASQKEARNALSK--VMGSTCINIEDKYRFMIAPSVITSEG 522
BLAST of GT624755 vs. TrEMBL
Match: B9I763_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_729255 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.486e-14 Identity = 49/92 (53.26%), Postives = 54/92 (58.70%), Query Frame = 2 Query: 2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNSRGEG 277 RAGSTG ATSFYTD+D+FLV I+KAIAD ESGN VAFATGK G A INIEDKYRFM+ S + EG Sbjct: 461 RAGSTGQATSFYTDQDLFLVAQIKKAIADVESGNTVAFATGKT-ARRKEREAAAALHKEARNDPSKVTGPACINIEDKYRFMMAPSIIKSEG 551
BLAST of GT624755 vs. TrEMBL
Match: A9SU89_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_135358 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.324e-14 Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 2 Query: 2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITAS--NSRGEG 277 RAG++G ATSFYT+RDMFLV IR+AI +AESGNA+AFATGK +A +GA ++ ++DKY+ M++A+ +GEG Sbjct: 481 RAGASGRATSFYTERDMFLVAQIRRAITEAESGNAMAFATGKAARRKEREQAAAFREGRVAPLGVAQIGATTVRVDDKYKHMLSAAADPKKGEG 574
BLAST of GT624755 vs. TrEMBL
Match: A9U5M5_PHYPA (Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_157210 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.065e-12 Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 2 Query: 2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMI--TASNSRGEG 277 RAG++G ATSFYT+RD+FLV IR+AI +AESGN +AFATGK + +GA ++ ++DKY+ M+ TA +GEG Sbjct: 276 RAGASGRATSFYTERDVFLVAQIRRAITEAESGNTMAFATGKAARRKEREQAAAFREGRMTPLGVAQVGATTVRVDDKYKHMLSATADPKKGEG 369
BLAST of GT624755 vs. TrEMBL
Match: C1FGG6_9CHLO (Predicted protein (Fragment) OS=Micromonas sp. RCC299 GN=MICPUN_66672 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.439e-9 Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 2 Query: 2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNS 265 RAG TG ATSFYTDRD FLV I++A+ + E+GNA AFATGK +G I ++DK++ M +++S Sbjct: 394 RAGMTGRATSFYTDRDSFLVAQIKRALQELENGNAFAFATGKEARAKEREAAKAWREGRAGEPEQAAVGGVDIIVDDKFKHMKLSASS 481
BLAST of GT624755 vs. TrEMBL
Match: A9U4P2_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_173651 PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 3.545e-8 Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 2 Query: 2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMI--TASNSRGEG 277 RAG++G ATSFYT+RD+FLV IR+AI +AESGN + A G++ +GA ++ ++DKY+ M+ TA +GEG Sbjct: 456 RAGASGRATSFYTERDVFLVAQIRRAITEAESGNTM--AEGRMTPLGVAQ-----------------VGATTVRVDDKYKHMLSATADPKKGEG 530
BLAST of GT624755 vs. TrEMBL
Match: C1MS18_MICPS (Predicted protein (Fragment) OS=Micromonas pusilla CCMP1545 GN=MICPUCDRAFT_1582 PE=3 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 6.047e-8 Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 2 Query: 2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGK 127 RAG TG ATSFYTDRD ++V +++A+A+ E+GNA AFATGK Sbjct: 392 RAGMTGRATSFYTDRDSYIVAQVKRALAELEAGNAFAFATGK 433 The following BLAST results are available for this feature:
BLAST of GT624755 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 10
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT624755 ID=GT624755; Name=GT624755; organism=Lens culinaris; type=EST; length=591bpback to top |