GT624755

EST Overview
NameGT624755
Unique NameGT624755
TypeEST
OrganismLens culinaris (lentil)
Sequence length591
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT624755 vs. TrEMBL
Match: Q9LKL6_PEA (DEAD box protein P68 OS=Pisum sativum GN=P68 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.079e-45
Identity = 110/165 (66.67%), Postives = 115/165 (69.70%), Query Frame = 2
Query:    2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNSRGEGXXXXXXXXXXXF*CLPYI*LMAVANCHLYVAWHILEMGKLSLHVYVLFHTV*RT-LVTGSFLNTI*RASQSCR 493
            RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKV               NIA SRHLGLGAASINIEDKYRFMI ASNSRGEG              LP I L+     + YV W ILEM KLSLH YVLFHT+  + LVTGSFL+TI R S  CR
Sbjct:  464 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIASSRHLGLGAASINIEDKYRFMIAASNSRGEGAEIVHGMIDEVS-DLPPIHLI-----YRYVVWQILEMDKLSLHAYVLFHTLLASKLVTGSFLDTICRISHVCR 622          
BLAST of GT624755 vs. TrEMBL
Match: B9SD86_RICCO (Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1164990 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.617e-19
Identity = 55/92 (59.78%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNSRGEG 277
            RAGS G ATSFYTDRD+FLV  I+KAIAD +SGN VAFATGKV                  LS+   LG  SINIEDKYRFMI +SN++GEG
Sbjct:  467 RAGSAGQATSFYTDRDLFLVAQIKKAIADVKSGNTVAFATGKVARRKEREAAASQKEARNDLSKL--LGPTSINIEDKYRFMIASSNTKGEG 556          
BLAST of GT624755 vs. TrEMBL
Match: D7SJI2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024552001 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.945e-19
Identity = 53/92 (57.61%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNSRGEG 277
            RAGSTG ATSFYTDRD+FLV +IRKAIAD  SGN VAFATGKV                IALS    +G  S+NIE+KYRFM++ S+ + EG
Sbjct:  469 RAGSTGQATSFYTDRDVFLVAHIRKAIADVGSGNTVAFATGKVARKKEREAAAAQKEARIALSNLSLMGPTSLNIEEKYRFMMSPSSIKTEG 560          
BLAST of GT624755 vs. TrEMBL
Match: B9INK9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_826310 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.450e-17
Identity = 53/92 (57.61%), Postives = 58/92 (63.04%), Query Frame = 2
Query:    2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNSRGEG 277
            RAGSTG ATSFYTDRD+FLV  I+KAIAD ESGN VAFATGK                  ALS+   +G+  INIEDKYRFMI  S    EG
Sbjct:  433 RAGSTGQATSFYTDRDLFLVAQIKKAIADVESGNTVAFATGKAARRKEREAAASQKEARNALSK--VMGSTCINIEDKYRFMIAPSVITSEG 522          
BLAST of GT624755 vs. TrEMBL
Match: B9I763_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_729255 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.486e-14
Identity = 49/92 (53.26%), Postives = 54/92 (58.70%), Query Frame = 2
Query:    2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNSRGEG 277
            RAGSTG ATSFYTD+D+FLV  I+KAIAD ESGN VAFATGK                          G A INIEDKYRFM+  S  + EG
Sbjct:  461 RAGSTGQATSFYTDQDLFLVAQIKKAIADVESGNTVAFATGKT-ARRKEREAAAALHKEARNDPSKVTGPACINIEDKYRFMMAPSIIKSEG 551          
BLAST of GT624755 vs. TrEMBL
Match: A9SU89_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_135358 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.324e-14
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 2
Query:    2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITAS--NSRGEG 277
            RAG++G ATSFYT+RDMFLV  IR+AI +AESGNA+AFATGK                 +A      +GA ++ ++DKY+ M++A+    +GEG
Sbjct:  481 RAGASGRATSFYTERDMFLVAQIRRAITEAESGNAMAFATGKAARRKEREQAAAFREGRVAPLGVAQIGATTVRVDDKYKHMLSAAADPKKGEG 574          
BLAST of GT624755 vs. TrEMBL
Match: A9U5M5_PHYPA (Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_157210 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.065e-12
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 2
Query:    2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMI--TASNSRGEG 277
            RAG++G ATSFYT+RD+FLV  IR+AI +AESGN +AFATGK                 +       +GA ++ ++DKY+ M+  TA   +GEG
Sbjct:  276 RAGASGRATSFYTERDVFLVAQIRRAITEAESGNTMAFATGKAARRKEREQAAAFREGRMTPLGVAQVGATTVRVDDKYKHMLSATADPKKGEG 369          
BLAST of GT624755 vs. TrEMBL
Match: C1FGG6_9CHLO (Predicted protein (Fragment) OS=Micromonas sp. RCC299 GN=MICPUN_66672 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.439e-9
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 2
Query:    2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMITASNS 265
            RAG TG ATSFYTDRD FLV  I++A+ + E+GNA AFATGK                         +G   I ++DK++ M  +++S
Sbjct:  394 RAGMTGRATSFYTDRDSFLVAQIKRALQELENGNAFAFATGKEARAKEREAAKAWREGRAGEPEQAAVGGVDIIVDDKFKHMKLSASS 481          
BLAST of GT624755 vs. TrEMBL
Match: A9U4P2_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_173651 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.545e-8
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 2
Query:    2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGKVXXXXXXXXXXXXXXXNIALSRHLGLGAASINIEDKYRFMI--TASNSRGEG 277
            RAG++G ATSFYT+RD+FLV  IR+AI +AESGN +  A G++                        +GA ++ ++DKY+ M+  TA   +GEG
Sbjct:  456 RAGASGRATSFYTERDVFLVAQIRRAITEAESGNTM--AEGRMTPLGVAQ-----------------VGATTVRVDDKYKHMLSATADPKKGEG 530          
BLAST of GT624755 vs. TrEMBL
Match: C1MS18_MICPS (Predicted protein (Fragment) OS=Micromonas pusilla CCMP1545 GN=MICPUCDRAFT_1582 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.047e-8
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 2
Query:    2 RAGSTGIATSFYTDRDMFLVTNIRKAIADAESGNAVAFATGK 127
            RAG TG ATSFYTDRD ++V  +++A+A+ E+GNA AFATGK
Sbjct:  392 RAGMTGRATSFYTDRDSYIVAQVKRALAELEAGNAFAFATGK 433          
The following BLAST results are available for this feature:
BLAST of GT624755 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q9LKL6_PEA8.079e-4566.67DEAD box protein P68 OS=Pisum sativum GN=P68 PE=2 ... [more]
B9SD86_RICCO2.617e-1959.78Dead box ATP-dependent RNA helicase, putative OS=R... [more]
D7SJI2_VITVI9.945e-1957.61Whole genome shotgun sequence of line PN40024, sca... [more]
B9INK9_POPTR2.450e-1757.61Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9I763_POPTR1.486e-1453.26Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9SU89_PHYPA4.324e-1445.74Predicted protein OS=Physcomitrella patens subsp. ... [more]
A9U5M5_PHYPA1.065e-1243.62Predicted protein (Fragment) OS=Physcomitrella pat... [more]
C1FGG6_9CHLO1.439e-939.77Predicted protein (Fragment) OS=Micromonas sp. RCC... [more]
A9U4P2_PHYPA3.545e-839.36Predicted protein OS=Physcomitrella patens subsp. ... [more]
C1MS18_MICPS6.047e-864.29Predicted protein (Fragment) OS=Micromonas pusilla... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 44..58
score
NoneNo IPR availableSEGsegsegcoord: 1..13
score: NAcoord: 33..47
score
NoneNo IPR availableSEGsegsegcoord: 16..31
score: NAcoord: 58..75
score
NoneNo IPR availableSEGsegsegcoord: 4..15
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624755 ID=GT624755; Name=GT624755; organism=Lens culinaris; type=EST; length=591bp
GCGTGCAGGATCAACTGGCATAGCCACTTCATTTTACACTGATCGTGACA
TGTTCCTTGTGACAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGG
AATGCTGTGGCATTTGCTACTGGAAAGGTTGCCAGAAGGAAGGAGAAAGA
GGCAGCAGCTGCACACAAAGAAGCAAATATTGCTTTATCTAGACACCTTG
GATTGGGAGCTGCTTCAATTAACATCGAAGATAAGTATAGATTCATGATT
ACTGCCTCAAACAGTAGAGGAGAAGGTGCAGCAGATAGTGCATGGGATGA
TTGATGAAGTTTCTGATGCCTCCCATACATTTGATTAATGGCAGTTGCTA
ACTGTCATCTGTATGTTGCTTGGCATATACTGGAGATGGGCAAGTTAAGT
TTGCATGTCTACGTACTGTTTCACACTGTGTAGCGCACACTGGTAACAGG
TAGCTTCCTAAACACAATTTGAAGAGCGAGTCAGTCATGTAGGTAATGGA
TCTCTCATGTAATCATAGAAACGGAAGTTTCATTACATTTGTGTTGCGGT
AAATCTTTTAGTTAAATTTGTAGAGTTAGGTTTTGGTGTAG
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