GT624764

EST Overview
NameGT624764
Unique NameGT624764
TypeEST
OrganismLens culinaris (lentil)
Sequence length521
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Homology
BLAST of GT624764 vs. TrEMBL
Match: B9GS58_POPTR (AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=ERF41 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.127e-19
Identity = 58/127 (45.67%), Postives = 69/127 (54.33%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNFSY--FVAPTIFPMPPTHDGRHVAFWGPPVCF----------TTGAPVRSEYKGYKL----ENIVASKVEEKKKPFLFDLNLPAPL 335
            EIRDPW+KTR+WLGTFDT              LRGPKA+TNF +   +AP  F          +  W  PV            T  APVRSEY+GYK+    EN+     EEK++P LFDLNLPAPL
Sbjct:   52 EIRDPWKKTRRWLGTFDTAEEAALAYDEAARSLRGPKARTNFFHRDHLAPLPFLQTTVVGAGGLKIWCSPVFLSDEVSRMAAPTAVAPVRSEYQGYKIESVDENVGLVLNEEKQRPLLFDLNLPAPL 178          
BLAST of GT624764 vs. TrEMBL
Match: B9H8I3_POPTR (AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=ERF42 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.514e-16
Identity = 54/131 (41.22%), Postives = 61/131 (46.56%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNFSY--FVAPTIFPMPPTHDGRHVAFWGPPVCFT---------TGAPVRSEYKGYKLENI---------VASKVEEKKKPFLFDLNLPAPL 335
            EIRDPW+K R WLGTFDT              LRGPKA+TNF +    AP  F                PVC             +PVRSEY GY +E +            K+   KKPFLFDLNLPAPL
Sbjct:   44 EIRDPWKKKRSWLGTFDTAEEAALAYDEAARSLRGPKARTNFFHNDHFAPVPFSQTAVVGAGVFEKCCSPVCLAGEVARMTMPAASPVRSEYTGYNMETVNENVGLVLNEEKKLRGGKKPFLFDLNLPAPL 174          
BLAST of GT624764 vs. TrEMBL
Match: D7TXI4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_81.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036228001 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.374e-14
Identity = 57/124 (45.97%), Postives = 67/124 (54.03%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNFSYFVAPTIFPMPPTHDGR----HVAFWGPPVCF--TTGAP--VRSEYKGYKLENI---VASKVEE--KKKPFLFDLNLPAPL 335
            EIRDPW+KTRKWLGTFDT              LRGPKAKTNFS   +  +         R    +VA  G  VCF  T G P  + + + GYK + +   V S+VEE  KKKP  FDLNLP  L
Sbjct:   47 EIRDPWKKTRKWLGTFDTAEEAARAYDDAARSLRGPKAKTNFSPVRSLPVVSGFGDRVNRWRAAYVAPDGRTVCFPGTAGGPAEIAAGFSGYKYDAVAVLVRSEVEEKKKKKPLPFDLNLPPSL 170          
BLAST of GT624764 vs. TrEMBL
Match: A5BY44_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002078 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.818e-14
Identity = 56/124 (45.16%), Postives = 66/124 (53.23%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNFSYFVAPTIFPMPPTHDGR----HVAFWGPPVCF--TTGAP--VRSEYKGYKLENI---VASKVEE--KKKPFLFDLNLPAPL 335
            EIRDPW+KTRKWLGTFDT              LRGPKAKTNFS   +  +         R    +VA  G  VCF  T   P  + + + GYK + +   V S+VEE  KKKP  FDLNLP  L
Sbjct:   47 EIRDPWKKTRKWLGTFDTAEEAARAYDDAARSLRGPKAKTNFSPVRSLPVVSGFGDRVNRWRAAYVAPDGRTVCFPGTAAGPAEIAAGFSGYKYDAVAVLVRSEVEEKKKKKPLPFDLNLPPSL 170          
BLAST of GT624764 vs. TrEMBL
Match: D5L121_MALDO (AP2 domain class transcription factor OS=Malus domestica GN=AP2D37 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.775e-7
Identity = 29/61 (47.54%), Postives = 33/61 (54.10%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNFSYFVAPTIFPMPPTHDGRH 185
            EIRDPW+KTR WLGTFD+              LRGPKAKTN         FP+P  +D  H
Sbjct:   49 EIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTN---------FPIPAEYDNNH 100          
BLAST of GT624764 vs. TrEMBL
Match: A9NMP5_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.624e-7
Identity = 26/44 (59.09%), Postives = 29/44 (65.91%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNFSY 134
            EIRDPW+KTR WLGTFDT              LRGPKAKTNF++
Sbjct:   47 EIRDPWKKTRLWLGTFDTAEEAARAYDNAARNLRGPKAKTNFAF 90          
BLAST of GT624764 vs. TrEMBL
Match: D5L0Y9_MALDO (AP2 domain class transcription factor OS=Malus domestica GN=AP2D5 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.733e-7
Identity = 30/66 (45.45%), Postives = 33/66 (50.00%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNFSYFVAPTIFPMPPTHDGRHVAFWG 200
            EIRDPW+KTR WLGTFD+              LRGPKAKTNF    A   F   PT        +G
Sbjct:   45 EIRDPWKKTRVWLGTFDSAEDAARAYDAAARILRGPKAKTNFQISCAYPTFYNNPTDPAIEAKLFG 110          
BLAST of GT624764 vs. TrEMBL
Match: A9SW67_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_189022 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 6.181e-7
Identity = 32/78 (41.03%), Postives = 38/78 (48.72%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNFSYFVAPTIFPMPPTHDGRHVAFWGPPVCFTTGAPVR 236
            EIRDPW+KTR WLGTFDT              LRG KAKTNFS        P PP+ D   +      V   +  P++
Sbjct:   38 EIRDPWKKTRVWLGTFDTAEEAARAYDSAARALRGTKAKTNFS--------PPPPSGDDHSMTSQSSTVESLSNGPMK 107          
BLAST of GT624764 vs. SwissProt
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.824e-7
Identity = 28/57 (49.12%), Postives = 31/57 (54.39%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNFSYFVAPTIFPMPPTH 173
            EIRDPW+KTR WLGTFD+              LRGPKAKTN         FP+P  H
Sbjct:   42 EIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTN---------FPLPYAH 89          
BLAST of GT624764 vs. SwissProt
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 9.054e-7
Identity = 24/42 (57.14%), Postives = 26/42 (61.90%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNF 128
            EIRDPW+K R WLGTFD+              LRGPKAKTNF
Sbjct:   42 EIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNF 83          
BLAST of GT624764 vs. TAIR peptide
Match: AT1G50640.1 (| Symbols: ERF3, ATERF3 | ethylene responsive element binding factor 3 | chr1:18757602-18758279 REVERSE LENGTH=225)

HSP 1 Score: 53.1434 bits (126), Expect = 1.000e-7
Identity = 24/42 (57.14%), Postives = 26/42 (61.90%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNF 128
            EIRDPW+K R WLGTFD+              LRGPKAKTNF
Sbjct:   42 EIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNF 83          
BLAST of GT624764 vs. TAIR peptide
Match: AT1G28360.1 (| Symbols: ERF12, ATERF12 | ERF domain protein 12 | chr1:9951934-9952503 FORWARD LENGTH=189)

HSP 1 Score: 52.7582 bits (125), Expect = 1.306e-7
Identity = 25/42 (59.52%), Postives = 26/42 (61.90%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNF 128
            EIRDPW+KTR WLGTFDT              LRG KAKTNF
Sbjct:   26 EIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNF 67          
BLAST of GT624764 vs. TAIR peptide
Match: AT1G24590.1 (| Symbols: DRNL, DRN-LIKE, SOB2, ESR2 | DORNROSCHEN-like | chr1:8714389-8715309 REVERSE LENGTH=306)

HSP 1 Score: 52.7582 bits (125), Expect = 1.306e-7
Identity = 28/69 (40.58%), Postives = 34/69 (49.28%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNFSYFVAPTIFPMPPTHDGRHVAFWGPPV 209
            EIRDP  K R+WLGTFDT              +RG KA+TNF       ++PMP      H  F  PP+
Sbjct:   72 EIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNF-------VYPMPSLDSYHHRIFSSPPM 133          
BLAST of GT624764 vs. TAIR peptide
Match: AT3G20310.1 (| Symbols: ATERF-7, ATERF7, ERF7 | ethylene response factor 7 | chr3:7085957-7086691 REVERSE LENGTH=244)

HSP 1 Score: 51.2174 bits (121), Expect = 3.800e-7
Identity = 29/69 (42.03%), Postives = 36/69 (52.17%), Query Frame = 3
Query:    3 EIRDPWRKTRKWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNFSYFVAPTIFPMPPTHDGRHVAFWGPPV 209
            EIRDP +K+R WLGTFD+              LRGPKAKTNF    +P+  P+ P     +     PPV
Sbjct:   41 EIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPIDCSPS-SPLQPLTYLHNQNLCSPPV 108          
The following BLAST results are available for this feature:
BLAST of GT624764 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 8
Match NameE-valueIdentityDescription
B9GS58_POPTR4.127e-1945.67AP2/ERF domain-containing transcription factor OS=... [more]
B9H8I3_POPTR9.514e-1641.22AP2/ERF domain-containing transcription factor OS=... [more]
D7TXI4_VITVI1.374e-1445.97Whole genome shotgun sequence of line PN40024, sca... [more]
A5BY44_VITVI6.818e-1445.16Putative uncharacterized protein OS=Vitis vinifera... [more]
D5L121_MALDO2.775e-747.54AP2 domain class transcription factor OS=Malus dom... [more]
A9NMP5_PICSI3.624e-759.09Putative uncharacterized protein OS=Picea sitchens... [more]
D5L0Y9_MALDO4.733e-745.45AP2 domain class transcription factor OS=Malus dom... [more]
A9SW67_PHYPA6.181e-741.03Predicted protein OS=Physcomitrella patens subsp. ... [more]
back to top
BLAST of GT624764 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
ERF3_TOBAC1.824e-749.12Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF82_ARATH9.054e-757.14Ethylene-responsive transcription factor 3 OS=Arab... [more]
back to top
BLAST of GT624764 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 4
Match NameE-valueIdentityDescription
AT1G50640.11.000e-757.14| Symbols: ERF3, ATERF3 | ethylene responsive elem... [more]
AT1G28360.11.306e-759.52| Symbols: ERF12, ATERF12 | ERF domain protein 12 ... [more]
AT1G24590.11.306e-740.58| Symbols: DRNL, DRN-LIKE, SOB2, ESR2 | DORNROSCHE... [more]
AT3G20310.13.800e-742.03| Symbols: ATERF-7, ATERF7, ERF7 | ethylene respon... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 49..63
score
NoneNo IPR availableSEGsegsegcoord: 10..29
score
NoneNo IPR availableSEGsegsegcoord: 19..32
score
NoneNo IPR availableSEGsegsegcoord: 52..67
score
NoneNo IPR availableSEGsegsegcoord: 31..45
score: NAcoord: 57..68
score
IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-bindingGENE3D3.30.730.10no descriptioncoord: 1..44
score: 2.8
IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-bindingPFAMPF00847AP2coord: 1..35
score: 1.2
IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-bindingSMARTSM00380no descriptioncoord: 1..49
score: 6.1
IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-bindingPROFILEPS51032AP2_ERFcoord: 1..43
score: 15
IPR016177DNA-binding, integrase-typeSUPERFAMILY54171DNA-binding domaincoord: 1..46
score: 4.9

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624764 ID=GT624764; Name=GT624764; organism=Lens culinaris; type=EST; length=521bp
CTGAGATTCGTGATCCATGGAGAAAGACCCGCAAGTGGCTAGGCACTTTC
GACACAGCAGAAGAAGCCGCCAGAGCATACGACGATGCTGCCAGAGCTCT
CCGTGGACCCAAAGCGAAGACCAACTTCTCATACTTCGTCGCTCCTACTA
TTTTTCCAATGCCTCCAACCCACGACGGGAGACATGTTGCGTTTTGGGGT
CCTCCGGTTTGTTTTACGACGGGCGCTCCGGTGAGGTCGGAGTACAAAGG
TTACAAGTTGGAGAATATTGTGGCGAGTAAGGTGGAGGAGAAGAAGAAGC
CGTTCTTGTTTGACCTTAACTTGCCAGCACCGCTTGTTTGAACGGTGTAG
AGGACAGACATAACAGTGGTTCAATTGTTTGTTTTGTTTTTAATTAACCT
TTTTGCATGTTGTGGATTTTGGTTGGATTCTATTCTAGTACTATGTTGAT
GTATAGTTTAGTGAATAGGTTTTAGCTTTTGAACCCTGTTTTCATTAATT
ATTCACAAATGTTTACCTTAG
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR016177DNA-bd_dom_sf