GT624896

EST Overview
NameGT624896
Unique NameGT624896
TypeEST
OrganismLens culinaris (lentil)
Sequence length533
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT624896 vs. TrEMBL
Match: C6SZF7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.776e-20
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 2
Query:  137 RLPSIIPRSRFSRHVVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            R   + P  RF RH+VRMAPDEEK+TRRSPLDFPIEWERPKPGRRPDI PQFSPMKT
Sbjct:   34 RFRPLTPLPRFRRHLVRMAPDEEKMTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKT 90          
BLAST of GT624896 vs. TrEMBL
Match: C6TFY1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.813e-20
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 2
Query:  143 PSIIPRSRFSRHVVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            P +    RF RH+VRMAPDEEK+TRRSPLDFPIEWERPKPGRRPDI PQFSPMKT
Sbjct:   33 PPLTLLPRFRRHLVRMAPDEEKMTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKT 87          
BLAST of GT624896 vs. TrEMBL
Match: D0VEB3_TOBAC (Putative uncharacterized protein (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.248e-18
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 2
Query:  161 SRFSRHVVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            SR S  +VRMAP+EEK+TRRSPLDFPIEWERPKPGRRPDI PQFSPMKT
Sbjct:   77 SRRSSQIVRMAPEEEKMTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKT 125          
BLAST of GT624896 vs. TrEMBL
Match: D7L8T2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_480607 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.094e-17
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:  158 RSRFSRHVVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            R+R   HVV MAP+EEKLTRR+PLDFPIEWERPKPGRRPDI P+FSPMKT
Sbjct:   53 RNRNPLHVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKT 102          
BLAST of GT624896 vs. TrEMBL
Match: B6TEN8_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.346e-17
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:  158 RSRFSRHVVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            R R+S  VVR APDEEK+T+RSPLDFPIEWERPKPGRRPDI P+FSPMKT
Sbjct:   46 RRRWSTLVVRAAPDEEKITKRSPLDFPIEWERPKPGRRPDIFPKFSPMKT 95          
BLAST of GT624896 vs. TrEMBL
Match: Q9SII4_ARATH (At2g17240/T23A1.10 OS=Arabidopsis thaliana GN=At2g17240 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.653e-16
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  158 RSRFSRHVVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            R+R    VV MAP+EEKLTRR+PLDFPIEWERPKPGRRPDI P+FSPMKT
Sbjct:   51 RNRNQLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKT 100          
BLAST of GT624896 vs. TrEMBL
Match: D5ADU5_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.653e-16
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 2
Query:  173 RHVVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            R VVRMAPDEEK+T+RSPLDFP+EW+RP+PGRRPDI PQFSPMKT
Sbjct:   45 RLVVRMAPDEEKMTKRSPLDFPLEWDRPRPGRRPDIFPQFSPMKT 89          
BLAST of GT624896 vs. TrEMBL
Match: A9PBZ2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_825841 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.465e-16
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 2
Query:  179 VVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            VV MAPDEEKLTRRSPLDFPIEWERPKPG RPDI PQFSPMKT
Sbjct:   63 VVSMAPDEEKLTRRSPLDFPIEWERPKPGSRPDIFPQFSPMKT 105          
BLAST of GT624896 vs. TrEMBL
Match: B6SN44_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.526e-16
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  158 RSRFSRHVVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            R R+S  VV  APDEEK+T+RSPLDFPIEWERPKPGRRPDI P+FSPMKT
Sbjct:   42 RRRWSTLVVCAAPDEEKITKRSPLDFPIEWERPKPGRRPDIFPKFSPMKT 91          
BLAST of GT624896 vs. TrEMBL
Match: B6UA24_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.008e-15
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  158 RSRFSRHVVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            R R++  VV  APDEEK+T+RSPLDFPIEWERPKPGRRPDI P+FSPMKT
Sbjct:   33 RRRWNALVVCAAPDEEKITKRSPLDFPIEWERPKPGRRPDIFPKFSPMKT 82          
BLAST of GT624896 vs. TAIR peptide
Match: AT2G17240.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24506.1); Has 2795 Blast hits to 943 proteins in 155 species: Archae - 0; Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153; Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink). | chr2:7498178-7498996 FORWARD LENGTH=140)

HSP 1 Score: 88.5817 bits (218), Expect = 2.221e-18
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  158 RSRFSRHVVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            R+R    VV MAP+EEKLTRR+PLDFPIEWERPKPGRRPDI P+FSPMKT
Sbjct:   51 RNRNQLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKT 100          
BLAST of GT624896 vs. TAIR peptide
Match: AT3G24506.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17240.1); Has 4864 Blast hits to 709 proteins in 125 species: Archae - 0; Bacteria - 592; Metazoa - 786; Fungi - 33; Plants - 410; Viruses - 61; Other Eukaryotes - 2982 (source: NCBI BLink). | chr3:8928366-8929281 REVERSE LENGTH=149)

HSP 1 Score: 85.8853 bits (211), Expect = 1.440e-17
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  158 RSRFSRHVVRMAPDEEKLTRRSPLDFPIEWERPKPGRRPDILPQFSPMKT 307
            ++R    VV MAP+EEKLTRR+PLDFPIEWERPKPGRRPDI P+FSPMK+
Sbjct:   59 KTRKQLQVVAMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKS 108          
The following BLAST results are available for this feature:
BLAST of GT624896 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6SZF7_SOYBN1.776e-2080.70Putative uncharacterized protein OS=Glycine max PE... [more]
C6TFY1_SOYBN8.813e-2081.82Putative uncharacterized protein OS=Glycine max PE... [more]
D0VEB3_TOBAC8.248e-1885.71Putative uncharacterized protein (Fragment) OS=Nic... [more]
D7L8T2_ARALY4.094e-1782.00Putative uncharacterized protein OS=Arabidopsis ly... [more]
B6TEN8_MAIZE5.346e-1782.00Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
Q9SII4_ARATH2.653e-1680.00At2g17240/T23A1.10 OS=Arabidopsis thaliana GN=At2g... [more]
D5ADU5_PICSI2.653e-1684.44Putative uncharacterized protein OS=Picea sitchens... [more]
A9PBZ2_POPTR3.465e-1693.02Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B6SN44_MAIZE4.526e-1680.00Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
B6UA24_MAIZE1.008e-1578.00Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
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BLAST of GT624896 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G17240.12.221e-1880.00| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
AT3G24506.11.440e-1776.00| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 16..39
score: NAcoord: 100..130
score
NoneNo IPR availableSEGsegsegcoord: 2..37
score
NoneNo IPR availableSEGsegsegcoord: 19..41
score
NoneNo IPR availableSEGsegsegcoord: 54..75
score
NoneNo IPR availableSEGsegsegcoord: 5..13
score: NAcoord: 28..53
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624896 ID=GT624896; Name=GT624896; organism=Lens culinaris; type=EST; length=533bp
CAAGAATTGAAGAAAAACAACAATGGCTTTCTTCACCCTAAACCCTATTC
TCACTCCTCTCTCTTCTTCGCTTAAACCTAATTCTCCTCCTTCTTCTTCT
TCCTCCTCCTCTTCTTCTTCTTCTTCTTGTAACTGTCGTTTACCCTCTAT
CATTCCGCGTTCGCGTTTTTCGAGGCATGTCGTTCGTATGGCTCCTGATG
AAGAGAAGTTAACCCGTCGTTCGCCTCTCGATTTCCCAATCGAGTGGGAA
AGGCCTAAACCAGGACGAAGACCGGATATACTCCCTCAGTTTAGTCCGAT
GAAGACACCTCTGCCACATCCAATGCCTGCAGATCCTCCCGAAGAGGATG
AAGAAGAGGAAGAGGAAGATCCTGAAAAGGAGGAGCCAGAGAATCCAGAG
CAGAAATAGTGTAGTAAACGACTTGTCTTGAATTTTGCAGTTATCTTGAT
ATGTCACTAGGGAAGTGCTGCTTGCTGAACTTGATGTAATATTAGGCCAT
TATATGAATAAGAAATGATGTTTGAGCTTTCTT
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