GT627181

EST Overview
NameGT627181
Unique NameGT627181
TypeEST
OrganismLens culinaris (lentil)
Sequence length716
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT627181 vs. TrEMBL
Match: Q4U6G1_PEA (LITAF-domain-containing protein OS=Pisum sativum GN=LITAF PE=4 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 4.173e-72
Identity = 123/129 (95.35%), Postives = 127/129 (98.45%), Query Frame = -2
Query:  113 RNEEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFALARY 499
            R EEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTI+RDTPAPFNCPHCGHT+LT+VRSKISLAAFVGCLMPMM+GVCFLCPSMDCLWHKYHYCPDC QKVADFEKSDICAVMDPPNWTQESFALARY
Sbjct:    3 RKEEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTIYRDTPAPFNCPHCGHTSLTSVRSKISLAAFVGCLMPMMLGVCFLCPSMDCLWHKYHYCPDCHQKVADFEKSDICAVMDPPNWTQESFALARY 131          
BLAST of GT627181 vs. TrEMBL
Match: Q4U6G2_PEA (LITAF-domain-containing protein OS=Pisum sativum GN=LITAF PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.614e-71
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = -2
Query:  113 RNEEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFALARY 499
            R EEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTI+RDTPAPFNCPHCGHT+LT+VRSKISLAAFVGCLMPMM+GVCFLCPSMDCLWHKYHYCPDC QKVADFEKSDICAVMDP NWTQESFALARY
Sbjct:    3 RKEEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTIYRDTPAPFNCPHCGHTSLTSVRSKISLAAFVGCLMPMMLGVCFLCPSMDCLWHKYHYCPDCHQKVADFEKSDICAVMDPRNWTQESFALARY 131          
BLAST of GT627181 vs. TrEMBL
Match: B7FMI0_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.463e-64
Identity = 113/130 (86.92%), Postives = 121/130 (93.08%), Query Frame = -2
Query:  113 RNEEEEV-AVGVPVYERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFALARY 499
            R EE+EV AVGVPVYERNGIPPNA+IGDPKGIPIQQTI+RDTPAPFNCPHC +T+LTT+RSKISLAAFVGCLMPMM+GVCFLCPSMDCLWHKYHYCP C QKVADFEKSD   VMDPP+WTQESFALA Y
Sbjct:    3 RKEEKEVMAVGVPVYERNGIPPNAIIGDPKGIPIQQTIYRDTPAPFNCPHCANTSLTTIRSKISLAAFVGCLMPMMLGVCFLCPSMDCLWHKYHYCPQCHQKVADFEKSDPRIVMDPPSWTQESFALAGY 132          
BLAST of GT627181 vs. TrEMBL
Match: C6SYT8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 9.025e-59
Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = -2
Query:  119 EEEEVAVGVPV---------YERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFALA 493
            +EE+V VGVPV         Y+R  IPPNA+ GDPKGIPIQQTI+RDTPAPFNCP+C HTALTTVRSK SLAAFVGCLMPMM+GVCFLCPSMDCLWHKYHYCP CQ+KVADFE+SD C VMDPP+WTQESFAL+
Sbjct:    4 KEEKVVVGVPVPVYYGGENEYQRGIIPPNAVFGDPKGIPIQQTIYRDTPAPFNCPYCAHTALTTVRSKPSLAAFVGCLMPMMLGVCFLCPSMDCLWHKYHYCPKCQEKVADFEESDPCVVMDPPHWTQESFALS 137          
BLAST of GT627181 vs. TrEMBL
Match: C6SVS5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.011e-58
Identity = 105/133 (78.95%), Postives = 115/133 (86.47%), Query Frame = -2
Query:  119 EEEVAVGVPV---------YERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFALA 490
            EE+VAVGVPV         Y+R  IPPN + GDPKGIPIQQTI+RDTPAPFNCP+CG TALTTVRSK SLAAFVGC +PMM+GVCFLCPSMDCLWHKYHYCP CQ+KVADFEKSD CAVMDPP+WTQESFAL+
Sbjct:    5 EEKVAVGVPVQLYYGGENEYQRGMIPPNTVFGDPKGIPIQQTIYRDTPAPFNCPYCGDTALTTVRSKPSLAAFVGCFVPMMLGVCFLCPSMDCLWHKYHYCPKCQEKVADFEKSDPCAVMDPPHWTQESFALS 137          
BLAST of GT627181 vs. TrEMBL
Match: A5ACU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005113 PE=4 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.262e-52
Identity = 92/134 (68.66%), Postives = 108/134 (80.60%), Query Frame = -2
Query:  122 EEEEVAVGVPV----------YERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 493
            +EEE  +G+P           Y+   IPPNA +GDPKG+PIQQTIFRDTPAPFNC +CG + +TTV+SK SLAA VGC+MPMM+G+CFLCPSMDCLWHKYHYCP C++KVADFEKSD C VMDPP WTQ+SFAL
Sbjct:    4 KEEEPVMGIPYPAVYHPNQNPYQAGVIPPNAFVGDPKGVPIQQTIFRDTPAPFNCVYCGSSGVTTVKSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCVVMDPPQWTQQSFAL 137          
BLAST of GT627181 vs. TrEMBL
Match: B9GMQ9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_640083 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.797e-52
Identity = 89/130 (68.46%), Postives = 110/130 (84.62%), Query Frame = -2
Query:  122 EEEEVAVGVPVY------ERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 493
            +++E  +GVP Y      +   IPPNA++GDP+GIPIQQT++RDTPAPFNC +CG++ +T VRSK SLAA VGC+MP+M+G CFLCPSMDCLWHK+HYCP C++KVADFEKSD CAVMDPP+WTQESFAL
Sbjct:    3 QKDEPVIGVPYYAGQNPYQAGAIPPNAIVGDPRGIPIQQTMYRDTPAPFNCVYCGNSGVTVVRSKPSLAAVVGCMMPLMVGFCFLCPSMDCLWHKHHYCPSCKEKVADFEKSDPCAVMDPPHWTQESFAL 132          
BLAST of GT627181 vs. TrEMBL
Match: A9P9Z3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_554722 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.265e-52
Identity = 90/130 (69.23%), Postives = 110/130 (84.62%), Query Frame = -2
Query:  122 EEEEVAVGVPVY------ERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 493
            ++++  VGVP Y      +   IPPNA++GDPKGIPIQQT++RDTPAPF+C +CG++ +T VRSK SLAA VGC+MP+M+G CFLCPSMDCLWHKYHYCP C++KVADFEKSD CAVMDPP+WTQESFAL
Sbjct:    3 QQDQPVVGVPYYAGQNPYQAGAIPPNAIVGDPKGIPIQQTMYRDTPAPFSCVYCGNSGVTFVRSKPSLAAVVGCMMPLMLGFCFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCAVMDPPHWTQESFAL 132          
BLAST of GT627181 vs. TrEMBL
Match: D7U609_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_146.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00000954001 PE=4 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.396e-51
Identity = 87/113 (76.99%), Postives = 100/113 (88.50%), Query Frame = -2
Query:  122 YERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 460
            Y+   IPPNA +GDPKG+PIQQTIFRDTPAPFNC +CG + +TTV+SK SLAA VGC+MPMM+G+CFLCPSMDCLWHKYHYCP C++KVADFEKSD C VMDPP WTQ+SFAL
Sbjct:   16 YQAGVIPPNAFVGDPKGVPIQQTIFRDTPAPFNCVYCGSSGVTTVKSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCVVMDPPQWTQQSFAL 128          
BLAST of GT627181 vs. TrEMBL
Match: B9RFX0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437770 PE=4 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.396e-51
Identity = 91/130 (70.00%), Postives = 107/130 (82.31%), Query Frame = -2
Query:  122 EEEEVAVGVPVY------ERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 493
            +++E A+GVP Y      +   IPPNA+ GDPKGIPIQQT++RDTPAPFNC  CG++ LT VRSK SLAA VGC+MP M+G CFLCPSMDCLWHKYHYCP+C++KVADFEKSD C VMDPP WTQ+SFAL
Sbjct:    3 QKDEPAIGVPYYVGQNPYQAGAIPPNAVFGDPKGIPIQQTMYRDTPAPFNCVFCGNSGLTLVRSKPSLAAVVGCMMPFMLGFCFLCPSMDCLWHKYHYCPNCKEKVADFEKSDPCLVMDPPQWTQQSFAL 132          
BLAST of GT627181 vs. TAIR peptide
Match: AT5G13190.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:4204987-4206205 REVERSE LENGTH=134)

HSP 1 Score: 181.03 bits (458), Expect = 5.534e-46
Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = -2
Query:  122 EEEEVAVGVPVYERNG------IPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 493
            +E    +GVP Y          +PPNA+ GDP G PIQQTI+RDTPAPFNC +CG+T LT +RSK  +AA V C+MP M+G CFLCPSMDCLW+K H+CP C  KVADFEKSD C VMDPP W Q SFAL
Sbjct:    3 KEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTGLTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVMDPPQWKQPSFAL 132          
BLAST of GT627181 vs. TAIR peptide
Match: AT4G24380.2 (| Symbols: | CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12612554-12613310 FORWARD LENGTH=171)

HSP 1 Score: 52.7582 bits (125), Expect = 2.273e-7
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 3
Query:  573 KKMKILCLHGFRTSGSFIKKQISKWDPSIFSLFHMEFPDGKFPAGGKS 716
            +K + LCLHGFRTSG  +K Q+ KW  S+     + F D  FP  GKS
Sbjct:   10 RKPRFLCLHGFRTSGEIMKIQLHKWPKSVIDRLDLVFLDAPFPCQGKS 57          
BLAST of GT627181 vs. TAIR peptide
Match: AT4G24380.1 (| Symbols: | INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12612554-12613586 FORWARD LENGTH=234)

HSP 1 Score: 52.7582 bits (125), Expect = 2.273e-7
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 3
Query:  573 KKMKILCLHGFRTSGSFIKKQISKWDPSIFSLFHMEFPDGKFPAGGKS 716
            +K + LCLHGFRTSG  +K Q+ KW  S+     + F D  FP  GKS
Sbjct:   10 RKPRFLCLHGFRTSGEIMKIQLHKWPKSVIDRLDLVFLDAPFPCQGKS 57          
BLAST of GT627181 vs. TAIR peptide
Match: AT5G65400.1 (| Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:26131448-26133062 FORWARD LENGTH=252)

HSP 1 Score: 52.373 bits (124), Expect = 2.968e-7
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 3
Query:  573 KKMKILCLHGFRTSGSFIKKQISKWDPSIFSLFHMEFPDGKFPAGGKS 716
            K  +ILCLHGFRTSG  ++  I KW  +I     ++F D  FPA GKS
Sbjct:   28 KNPRILCLHGFRTSGRILQAGIGKWPDTILRDLDLDFLDAPFPATGKS 75          
The following BLAST results are available for this feature:
BLAST of GT627181 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q4U6G1_PEA4.173e-7295.35LITAF-domain-containing protein OS=Pisum sativum G... [more]
Q4U6G2_PEA4.614e-7194.57LITAF-domain-containing protein OS=Pisum sativum G... [more]
B7FMI0_MEDTR5.463e-6486.92Putative uncharacterized protein OS=Medicago trunc... [more]
C6SYT8_SOYBN9.025e-5978.36Putative uncharacterized protein OS=Glycine max PE... [more]
C6SVS5_SOYBN2.011e-5878.95Putative uncharacterized protein OS=Glycine max PE... [more]
A5ACU3_VITVI1.262e-5268.66Putative uncharacterized protein OS=Vitis vinifera... [more]
B9GMQ9_POPTR4.797e-5268.46Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9P9Z3_POPTR6.265e-5269.23Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7U609_VITVI1.396e-5176.99Whole genome shotgun sequence of line PN40024, sca... [more]
B9RFX0_RICCO1.396e-5170.00Putative uncharacterized protein OS=Ricinus commun... [more]
back to top
BLAST of GT627181 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 4
Match NameE-valueIdentityDescription
AT5G13190.15.534e-4662.31| Symbols: | CONTAINS InterPro DOMAIN/s: LPS-indu... [more]
AT4G24380.22.273e-747.92| Symbols: | CONTAINS InterPro DOMAIN/s: Serine h... [more]
AT4G24380.12.273e-747.92| Symbols: | INVOLVED IN: 10-formyltetrahydrofola... [more]
AT5G65400.12.968e-750.00| Symbols: | alpha/beta-Hydrolases superfamily pr... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 5..16
score
NoneNo IPR availablePANTHERPTHR22778OVARIAN CANCER GENE-2 PROTEIN-RELATEDcoord: 35..85
score: 2
NoneNo IPR availableSEGsegsegcoord: 7..24
score
NoneNo IPR availableSEGsegsegcoord: 28..42
score
NoneNo IPR availablePANTHERPTHR23292LIPOPOLYSACCHARIDE-INDUCED TRANSCRIPTION FACTOR REGULATING TUMOR NECROSIS FACTOR ALPHAcoord: 33..107
score: 1.5
IPR005645Serine hydrolasePFAMPF03959FSH1coord: 38..81
score: 6.5
IPR006629LPS-induced tumor necrosis factor alpha factorPFAMPF10601zf-LITAF-likecoord: 38..106
score: 2.6
IPR006629LPS-induced tumor necrosis factor alpha factorSMARTSM00714no descriptioncoord: 42..107
score: 5.4

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT627181 ID=GT627181; Name=GT627181; organism=Lens culinaris; type=EST; length=716bp
GTACAACTGAGTAATTAAATTAAAGTAGCAAACAAGCATTTTCATCCATT
GTACACACATATAAGAGCAATGAAGAACAACATTTACAACTCATAATAGA
AATATCATACTAGTATCTCGCCAATGCAAAGCTCTCCTGCGTCCAGTTTG
GCGGATCCATCACAGCACAGATATCTGATTTCTCAAAATCAGCAACCTTT
TGTTGGCAATCAGGACAGTAGTGGTATTTATGCCAGAGGCAGTCCATTGA
AGGACAAAGAAAGCAAACTCCAATCATCATTGGCATCAAGCATCCAACAA
ATGCCGCCAGACTAATCTTCGATCTAACGGTGGTGAGGGCGGTGTGGCCA
CAGTGAGGGCAATTGAAGGGAGCAGGAGTGTCTCTGAAAATAGTCTGTTG
GATGGGAATACCTTTGGGATCTCCGATCAACGCGTTAGGTGGGATGCCGT
TTCTTTCATAAACGGGTACTCCAACCGCCACTTCTTCTTCTTCATTTCTT
TACAAAAAGTCCAACTTTGTGACCATTGAATTAAACATAGAAACAAAAAT
GGTAGGAGGAGGAGAAAATGAAAAGAAGATGAAAATACTGTGCCTCCATG
GATTCAGAACCAGTGGCAGTTTCATCAAAAAACAAATCAGCAAATGGGAT
CCTTCTATTTTCTCTCTATTTCACATGGAATTCCCGGATGGAAAATTTCC
TGCTGGAGGCAAATCT
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR005645FSH-like_dom
IPR006629LITAF