GT621388

EST Overview


Name	GT621388
Unique Name	GT621388
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	879

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

[Close]

BLAST of GT621388 vs. TrEMBL
Match: B9HGM0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_819904 PE=4 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 9.786e-54
Identity = 102/127 (80.31%), Postives = 110/127 (86.61%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYLG 383
            QA+WQPHNRA+ARRIQNMGWRAD              SKGTGI+EEFEE+PVQSRGFGILDVGYRS +EAWAAGGSGVLLRT NGGK+W RDKAADNIAANLY+VKFID+KKGFVLGNDGVLLRYLG
Sbjct:  268 QAFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLYLSKGTGISEEFEEIPVQSRGFGILDVGYRSKEEAWAAGGSGVLLRTTNGGKTWTRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 394

[Close]

BLAST of GT621388 vs. TrEMBL
Match: D7M1N0_ARALY (HCF136 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489169 PE=4 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.278e-53
Identity = 102/127 (80.31%), Postives = 109/127 (85.83%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYLG 383
            Q YWQPHNRAVARRIQNMGWRAD              SKGTG+TE+FEEVPVQSRGFGILDVGYRS +EAWAAGGSG+LLRT NGGKSW RDKAADNIAANLYAVKF+D+KKGFVLGNDGVLLRY+G
Sbjct:  267 QPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGLTEDFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 393

[Close]

BLAST of GT621388 vs. TrEMBL
Match: D7T9G8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00012045001 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 3.148e-52
Identity = 100/127 (78.74%), Postives = 108/127 (85.04%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYLG 383
            Q YWQPHNRAVARRIQNMGWRAD              SKGTGI+E+FEE+PVQSRGFGILDVGYRS +EAWAAGGSGVLLRT NGGK+W RDKAADNIAANLY+VKFID+ KGFVLGNDGVLLR+LG
Sbjct:  278 QPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGISEDFEEIPVQSRGFGILDVGYRSKEEAWAAGGSGVLLRTTNGGKTWTRDKAADNIAANLYSVKFIDDTKGFVLGNDGVLLRFLG 404

[Close]

BLAST of GT621388 vs. TrEMBL
Match: A5JVZ6_MAIZE (Plastid high chlorophyll fluorescence 136 OS=Zea mays GN=HCF136 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 7.013e-52
Identity = 99/127 (77.95%), Postives = 109/127 (85.83%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYLG 383
            Q +WQPHNRAVARRIQNMGWRAD              S+GTGITE+FEEV VQSRGFGILDVGYRS +EAWAAGGSGVLL+T NGGKSW+RDKAADNIAANLY+VKF+D++KGFVLGNDGVLLRYLG
Sbjct:  268 QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSRGTGITEDFEEVQVQSRGFGILDVGYRSQEEAWAAGGSGVLLKTTNGGKSWMRDKAADNIAANLYSVKFLDDRKGFVLGNDGVLLRYLG 394

[Close]

BLAST of GT621388 vs. TrEMBL
Match: C5Z2L8_SORBI (Putative uncharacterized protein Sb10g031120 OS=Sorghum bicolor GN=Sb10g031120 PE=4 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.041e-51
Identity = 98/127 (77.17%), Postives = 108/127 (85.04%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYLG 383
            Q +WQPHNRAVARRIQNMGWRAD              SKGTGI+E+FEEV VQSRGFGILDVGYRS +EAWAAGGSGVLL+T NGGK+W+RDKAADNIAANLY+VKF+D+ KGFVLGNDGVLLRYLG
Sbjct:  271 QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVQVQSRGFGILDVGYRSQEEAWAAGGSGVLLKTTNGGKNWVRDKAADNIAANLYSVKFLDDSKGFVLGNDGVLLRYLG 397

[Close]

BLAST of GT621388 vs. TrEMBL
Match: B9S4K6_RICCO (Photosystem II stability/assembly factor HCF136, chloroplast, putative OS=Ricinus communis GN=RCOM_0809700 PE=4 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.323e-50
Identity = 97/127 (76.38%), Postives = 107/127 (84.25%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYLG 383
            Q +WQPHNRAVARRIQNMGWRAD              SKGTGI+E+FEE+ VQSRGFGILDVGYRS DEAWAAGGSG+LLRT NGGK+W RDKAAD+IAANLY+VKFI++ KGFVLGNDGVLLRYLG
Sbjct:  271 QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGISEDFEEISVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGKTWTRDKAADSIAANLYSVKFINDSKGFVLGNDGVLLRYLG 397

[Close]

BLAST of GT621388 vs. TrEMBL
Match: B9FR06_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_22738 PE=4 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 4.255e-49
Identity = 94/125 (75.20%), Postives = 104/125 (83.20%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRY 377
            Q +WQPHNRAVARRIQNMGWRAD              SKG+GITE+FEE  VQSRGFGILDVGYRS DEAWAAGGSGVLL+T NGGK+W+RDKAADNIAANLY+VKF+ + KG+VLGNDGVLLRY
Sbjct:  268 QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAANLYSVKFLGDNKGYVLGNDGVLLRY 392

HSP 2 Score: 107.457 bits (267), Expect = 1.685e-21
Identity = 48/58 (82.76%), Postives = 55/58 (94.83%), Query Frame = 3

Query:  204 DEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRY 377
            DEAWAAGGSGVLL+T NGGK+W+RDKAADNIAANLY+VKF+ + KG+VLGNDGVLLRY
Sbjct:  393 DEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAANLYSVKFLGDNKGYVLGNDGVLLRY 450

[Close]

BLAST of GT621388 vs. TrEMBL
Match: B8B2X2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_24541 PE=4 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 4.255e-49
Identity = 94/125 (75.20%), Postives = 104/125 (83.20%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRY 377
            Q +WQPHNRAVARRIQNMGWRAD              SKG+GITE+FEE  VQSRGFGILDVGYRS DEAWAAGGSGVLL+T NGGK+W+RDKAADNIAANLY+VKF+ + KG+VLGNDGVLLRY
Sbjct:  268 QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAANLYSVKFLGDNKGYVLGNDGVLLRY 392

[Close]

BLAST of GT621388 vs. TrEMBL
Match: A9RRW8_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160605 PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 6.793e-47
Identity = 93/127 (73.23%), Postives = 102/127 (80.31%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYLG 383
            Q YWQPHNR  ARRIQNMGWRAD              SKGTG+TE+F+E  + SRGFGILDVGYRS DEAWAAGGSG+LLRT +GGKSWIRDK AD IAANLY+VKFI++ KGFVLGNDGVLLRYLG
Sbjct:  309 QPYWQPHNRTSARRIQNMGWRADGGLWLVVRGGGLFVSKGTGVTEDFDEQKIPSRGFGILDVGYRSKDEAWAAGGSGILLRTTDGGKSWIRDKVADKIAANLYSVKFIND-KGFVLGNDGVLLRYLG 434

[Close]

BLAST of GT621388 vs. TrEMBL
Match: A9T9I6_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_142308 PE=4 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.416e-44
Identity = 95/144 (65.97%), Postives = 101/144 (70.14%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGI-----------------TEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYLG 383
            Q YWQPHNR  ARRIQNMGWRAD              SKGTG+                 TE+FEE  + SRGFGILDVGYRS DEAWAAGGSG+LLRT +GGKSWIRDK AD IAANLY+VKFID  KGFVLGNDGVLLRYLG
Sbjct:  211 QPYWQPHNRTSARRIQNMGWRADGGLWLVVRGGGLYVSKGTGVGISHTLGTRSKLSFLQVTEDFEEQKIPSRGFGILDVGYRSKDEAWAAGGSGILLRTTDGGKSWIRDKVADKIAANLYSVKFID-NKGFVLGNDGVLLRYLG 353

[Close]

BLAST of GT621388 vs. SwissProt
Match: P2SAF_ARATH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.157e-55
Identity = 104/127 (81.89%), Postives = 109/127 (85.83%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYLG 383
            Q YWQPHNRAVARRIQNMGWRAD              SKGTGITEEFEEVPVQSRGFGILDVGYRS +EAWAAGGSG+LLRT NGGKSW RDKAADNIAANLYAVKF+D+KKGFVLGNDGVLLRY+G
Sbjct:  277 QPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403

[Close]

BLAST of GT621388 vs. SwissProt
Match: P2SAF_ORYSJ (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.824e-47
Identity = 95/149 (63.76%), Postives = 106/149 (71.14%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTG----------------------ITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYLG 383
            Q +WQPHNRAVARRIQNMGWRAD              SKG+G                      ITE+FEE  VQSRGFGILDVGYRS DEAWAAGGSGVLL+T NGGK+W+RDKAADNIAANLY+VKF+ + KG+VLGNDGVLLRY+G
Sbjct:  268 QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGFQFFYRGLNDAHAISYLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416

[Close]

BLAST of GT621388 vs. SwissProt
Match: YC48L_SYNY3 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803) GN=slr2034 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.038e-21
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRG-FGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRY 377
            Q  W PHNR  +RR+Q MG+  D              S      E  + +  Q +G +G+LD+ +R+ +E W AG SG LL + +GG++W +D   ++I ANLY V F+  +KGFVLG DG+LL+Y
Sbjct:  207 QTEWTPHNRNSSRRLQTMGYGKDGQLWLLARGGQLQFSTDPDAEEWSDVIAPQDKGSWGLLDLSFRTPEEVWVAGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVFLSPEKGFVLGQDGILLKY 332

[Close]

BLAST of GT621388 vs. SwissProt
Match: YC48L_SYNP6 (Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0372_d PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.460e-19
Identity = 52/134 (38.81%), Postives = 73/134 (54.48%), Query Frame = 3

Query:   12 WQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEV------------PVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRY 377
            W PH R  +RR+Q MG+  D              SK + I + +EE+            P ++ G+G LD+ YRS  E W +GGSG LL + +GG+ W RD+    + +NLY +KF   K+GFVLG  G+LLRY
Sbjct:  211 WTPHQRTSSRRLQLMGFGPDDRTWLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRSKQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343

[Close]

BLAST of GT621388 vs. SwissProt
Match: YC48L_SYNE7 (Ycf48-like protein OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1178 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.460e-19
Identity = 52/134 (38.81%), Postives = 73/134 (54.48%), Query Frame = 3

Query:   12 WQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEV------------PVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRY 377
            W PH R  +RR+Q MG+  D              SK + I + +EE+            P ++ G+G LD+ YRS  E W +GGSG LL + +GG+ W RD+    + +NLY +KF   K+GFVLG  G+LLRY
Sbjct:  211 WTPHQRTSSRRLQLMGFGPDDRTWLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRSKQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343

[Close]

BLAST of GT621388 vs. SwissProt
Match: YC48L_SYNP2 (Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A0229 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.491e-19
Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = 3

Query:   12 WQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGI--TEEFEE--VPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRY 377
            W PHNR  +RR+Q+MG+  +              S  T     E + E   P      G+L +GYR+  E WA GGSG ++ + +GG +W RD A + I  N Y V F++E KGF+LG  GV+LRY
Sbjct:  208 WTPHNRNSSRRLQSMGFNGEDKLWLLARGGVVQFSDDTNPDNAEAWSEPVTPQYRNSVGLLHIGYRTPAELWAVGGSGSVVVSKDGGDTWFRDAALEEIPTNFYRVVFLNENKGFILGQQGVILRY 333

[Close]

BLAST of GT621388 vs. SwissProt
Match: YC48L_ANASP (Ycf48-like protein OS=Anabaena sp. (strain PCC 7120) GN=alr3844 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.491e-19
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRY 377
            Q  W PHNR  +RR++NMG+  D                         E P  +  +G+LD+ YR+ +E W  GGSG LL + +GGK+W +D+  + +AAN Y V F+   +GFV+G+ GVLL+Y
Sbjct:  201 QNAWVPHNRNSSRRVENMGFSQDGLWLLARGGQVQFSDPANPDEWLDAETPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVIGDRGVLLKY 325

[Close]

BLAST of GT621388 vs. SwissProt
Match: YC48L_ANAVT (Ycf48-like protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_1856 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.466e-19
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFE-EVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRY 377
            Q  W PHNR  +RR++NMG+  D              S  T   E  + + P  +  +G+LD+ YR+ +E W  GGSG LL + +GGK+W +D+  + +AAN Y V F+   +GFV+G+ GVLL+Y
Sbjct:  201 QNAWVPHNRNSSRRVENMGFSQDGLWLLARGGQVQF-SDPTKPDEWLDAQTPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVIGDRGVLLKY 325

[Close]

BLAST of GT621388 vs. SwissProt
Match: YC48L_THEEB (Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.109e-18
Identity = 45/128 (35.16%), Postives = 70/128 (54.69%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEV--PVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYL 380
            Q  W+PHNR  +RR+ NMG+  D              S     +E + E+  P++    G LD+ YR+ +E W AGG+G LL + +GG++W +D     + +N Y + F    +GF+LG  G+LLRY+
Sbjct:  213 QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 339

[Close]

BLAST of GT621388 vs. SwissProt
Match: P2SAF_CYAPA (Photosystem II stability/assembly factor HCF136 OS=Cyanophora paradoxa GN=hcf136 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.194e-17
Identity = 45/128 (35.16%), Postives = 68/128 (53.12%), Query Frame = 3

Query:   12 WQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRG-----FGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYL 380
            W  H R  +RRIQ+MG+  +              S      E   E P    G      G+L++ +++  E W +GGSG+LL + + G +W ++ + DNI +N Y + FID++ GFVLGN G LLRY+
Sbjct:  204 WISHPRQSSRRIQSMGFTNNNRLWMLTRGGQLWFSSNDSFDEPNWEGPKTPEGKVGFGLGLLNLAFKTPTEIWVSGGSGILLSSQDTGNTWKKETSTDNIPSNFYKISFIDKEVGFVLGNQGTLLRYV 331

[Close]

BLAST of GT621388 vs. TAIR peptide
Match: AT5G23120.1 (| Symbols: HCF136 | photosystem II stability/assembly factor, chloroplast (HCF136) | chr5:7778154-7780463 FORWARD LENGTH=403)

HSP 1 Score: 216.083 bits (549), Expect = 2.093e-56
Identity = 104/127 (81.89%), Postives = 109/127 (85.83%), Query Frame = 3

Query:    3 QAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSSDEAWAAGGSGVLLRTNNGGKSWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGVLLRYLG 383
            Q YWQPHNRAVARRIQNMGWRAD              SKGTGITEEFEEVPVQSRGFGILDVGYRS +EAWAAGGSG+LLRT NGGKSW RDKAADNIAANLYAVKF+D+KKGFVLGNDGVLLRY+G
Sbjct:  277 QPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403

The following BLAST results are available for this feature:

BLAST of GT621388 vs. TrEMBL
BLAST of GT621388 vs. SwissProt
BLAST of GT621388 vs. TAIR peptide

BLAST of GT621388 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9HGM0_POPTR	9.786e-54	80.31	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7M1N0_ARALY	1.278e-53	80.31	HCF136 OS=Arabidopsis lyrata subsp. lyrata GN=ARAL...	[more]
D7T9G8_VITVI	3.148e-52	78.74	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5JVZ6_MAIZE	7.013e-52	77.95	Plastid high chlorophyll fluorescence 136 OS=Zea m...	[more]
C5Z2L8_SORBI	2.041e-51	77.17	Putative uncharacterized protein Sb10g031120 OS=So...	[more]
B9S4K6_RICCO	1.323e-50	76.38	Photosystem II stability/assembly factor HCF136, c...	[more]
B9FR06_ORYSJ	4.255e-49	75.20	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8B2X2_ORYSI	4.255e-49	75.20	Putative uncharacterized protein OS=Oryza sativa s...	[more]
A9RRW8_PHYPA	6.793e-47	73.23	Predicted protein OS=Physcomitrella patens subsp. ...	[more]
A9T9I6_PHYPA	2.416e-44	65.97	Predicted protein OS=Physcomitrella patens subsp. ...	[more]

BLAST of GT621388 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
P2SAF_ARATH	2.157e-55	81.89	Photosystem II stability/assembly factor HCF136, c...	[more]
P2SAF_ORYSJ	2.824e-47	63.76	Photosystem II stability/assembly factor HCF136, c...	[more]
YC48L_SYNY3	2.038e-21	39.68	Ycf48-like protein OS=Synechocystis sp. (strain PC...	[more]
YC48L_SYNP6	1.460e-19	38.81	Ycf48-like protein OS=Synechococcus sp. (strain AT...	[more]
YC48L_SYNE7	1.460e-19	38.81	Ycf48-like protein OS=Synechococcus elongatus (str...	[more]
YC48L_SYNP2	2.491e-19	38.89	Ycf48-like protein OS=Synechococcus sp. (strain AT...	[more]
YC48L_ANASP	2.491e-19	37.60	Ycf48-like protein OS=Anabaena sp. (strain PCC 712...	[more]
YC48L_ANAVT	9.466e-19	38.89	Ycf48-like protein OS=Anabaena variabilis (strain ...	[more]
YC48L_THEEB	2.109e-18	35.16	Ycf48-like protein OS=Thermosynechococcus elongatu...	[more]
P2SAF_CYAPA	5.194e-17	35.16	Photosystem II stability/assembly factor HCF136 OS...	[more]

BLAST of GT621388 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G23120.1	2.093e-56	81.89	\| Symbols: HCF136 \| photosystem II stability/assem...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.130.10.140	no description	coord: 21..123 score: 4.7
None	No IPR available	SEG	seg	seg	coord: 24..37 score
None	No IPR available	SUPERFAMILY	110296	Oligoxyloglucan reducing end-specific cellobiohydrolase	coord: 1..127 score: 5

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT621388 ID=GT621388; Name=GT621388; organism=Lens culinaris; type=EST; length=879bp
GTCAGGCGTACTGGCAGCCACATAACAGAGCAGTTGCTAGAAGAATCCAA
AACATGGGATGGAGAGCTGATGGAGGTCTTTGGCTTCTTGTCCGCGGAGG
TGGTCTTTATCTCAGCAAGGGCACAGGGATAACTGAAGAATTTGAGGAAG
TTCCTGTTCAAAGCCGGGGGTTCGGCATTCTTGATGTTGGGTATCGTTCA
TCGGATGAGGCTTGGGCAGCAGGTGGGAGTGGTGTTCTCTTGAGAACTAA
TAACGGTGGCAAGTCATGGATTCGTGACAAAGCTGCTGACAACATTGCTG
CAAATTTATACGCAGTAAAGTTCATTGATGAGAAGAAAGGATTTGTATTG
GGAAATGATGGAGTCTTGCTTCGCTACCTTGGATAGAGCTTTAATTCAAC
ATGGTAATAACAGTTTCCTGTTTCTAGCTAACATAAGCTATCTTTCAATG
GACTAGTTTCAGCTGCATCATGTAACTGTCTGCATAGTTTTATAATTGTC
ATGTGATATAGAATGAGAAATGGTTATGGGTTCCTATAAATTATCATTCC
TTATATGATTTTGTGCTGTTCTTTCTTTGCATGCTTAAATTTGGGGGTCA
ACTACTGCGAGCATTATTTTAACAAGGACCTGAAGTATATAGGACCAGGA
TTCATCTCATACAATTAAATCAAAAGTTTGTCAACTCAATTGCAATTTTG
TAGCAGATTAAATATCCATGCTAATACTACTACTATTCATTACGTTGAAG
AGCGCTTTTGGAACAAATCAATTTCTTGATGTCGTGCTTAAAAATGTGAG
GACATGTGGAAACATTCTGCACCACTATGATTATATTGTCAATTTAACAT
TGTAATTGCCATACTACTATTACATTAAA

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