GT623401
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT623401 vs. TrEMBL
Match: D7U9K6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_62.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031632001 PE=4 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 3.020e-81 Identity = 147/243 (60.49%), Postives = 187/243 (76.95%), Query Frame = 1 Query: 1 RKLSDWKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAVXXXXXXXXXXQIEPLSGLKTILEELLQEDGIYEARISRQGFE 729 R+ +DWKAA A+ + +Y GR+E N GGLL+RFYS++GFLPFPQLSP ++ +EPHK I+++A GS++S+ V+L DEEK+ L+FSEK A+W K+SK +N+GD+F+A V V D+GAFV+LRFPDGLYHL+GL+HVSEVSWDL+ DVRD+L DEV+VKI+ V+ VK R SIKQLE+DPLLETLDKVIPQD IEPL GL+TI EELLQE+GI + RISRQGFE Sbjct: 90 RRSADWKAARAHLESGFIYEGRIEGFNGGGLLVRFYSLVGFLPFPQLSPSHSCKEPHKTIQEIAKGLIGSLISVKVILADEEKRKLIFSEKEAAWLKFSKQINIGDIFEAMVGSVEDYGAFVHLRFPDGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVKIVKVDRVKSRITLSIKQLEEDPLLETLDKVIPQDGSTGPDSLRTSDSYDIEPLPGLETIFEELLQEEGISDVRISRQGFE 332
BLAST of GT623401 vs. TrEMBL
Match: A5BZI0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006784 PE=4 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 1.112e-75 Identity = 146/271 (53.87%), Postives = 188/271 (69.37%), Query Frame = 1 Query: 1 RKLSDWKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPD----------GLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAV------------------XXXXXXXXXXQIEPLSGLKTILEELLQEDGIYEARISRQGFE 729 R+ +DWKAA A+ + +Y GR+E N GGLL+RFYS++GFLPFPQLSP ++ +EPHK I+++A GS++S+ V+L DEEK+ L+FSEK A+W K+SK +N+GD+F+A V V D+GAFV+LRFPD GLYHL+GL+HVSEVSWDL+ DVRD+L DEV+VKI+ V+ VK R SIKQLE+DPLLETLDKVIPQ + + IEPL GL+TI EELLQE+GI + RISRQGFE Sbjct: 90 RRSADWKAARAHLESGFIYEGRIEGFNGGGLLVRFYSLVGFLPFPQLSPSHSCKEPHKTIQEIAKGLIGSLISVKVILADEEKRKLIFSEKEAAWLKFSKQINIGDIFEAMVGSVEDYGAFVHLRFPDGTSFSVTYITGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVKIVKVDRVKSRITLSIKQLEEDPLLETLDKVIPQIIFLLHRTKSSDVSHLLQDGSTGPDSLRTSDSYDIEPLPGLETIFEELLQEEGISDVRISRQGFE 360
BLAST of GT623401 vs. TrEMBL
Match: B9IAB2_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_246437 PE=4 SV=1) HSP 1 Score: 276.174 bits (705), Expect = 1.962e-72 Identity = 136/241 (56.43%), Postives = 176/241 (73.03%), Query Frame = 1 Query: 10 SDWKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDG-LYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAVXXXXXXXXXXQIEPLSGLKTILEELLQEDGIYEARISRQGFE 729 +DWKA AY DG + GRVE N GGL++RFYS++GFLPFP LSP ++ ++P K I ++A + TG ++S+ V+ +EE + L+FSEK A W K+SK +N+G++F RV V D+GAF+++RFPDG LYHL+GL+HVSEVSWDL+ DVRDIL V DEV VKII ++ K R SIKQLE+DPLLETLDKVIPQD IEPL GL++I +EL +EDGI + RISRQGFE Sbjct: 1 ADWKAVKAYYDGGHILQGRVEGFNGGGLIVRFYSLVGFLPFPLLSPSHSCKDPQKTIHEIAKDLTGLLISVKVIHAEEENRKLIFSEKEAVWSKFSKGINVGEIFAGRVGSVEDYGAFIHMRFPDGSLYHLTGLVHVSEVSWDLVQDVRDILNVGDEVTVKIIDIDQGKSRITLSIKQLEEDPLLETLDKVIPQDGSIAPDPLSMHNSITIEPLPGLESIFQELTREDGIDDIRISRQGFE 241
BLAST of GT623401 vs. TrEMBL
Match: Q9LK47_ARATH (AT3g23700/MYM9_3 OS=Arabidopsis thaliana GN=At3g23700 PE=2 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 1.316e-68 Identity = 134/240 (55.83%), Postives = 167/240 (69.58%), Query Frame = 1 Query: 10 SDWKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAVXXXXXXXXXXQIEPLSGLKTILEELLQEDGIYEARISRQGFE 729 SDWK A AY + G V+ N GGLLIRF+S++GFLP+PQLSP + +EP K I ++A GS L + V+ DEE + L+ SEK A W KYS+ VN+GDVF+ RV V D+GAF++LRF DGLYHL+GL+HVSEVSWD + DVRD+LR DEV+V + ++ K R SIKQLEDDPLLETLDKVI +D IEPL GL+TILEELL+EDGI +I+RQGFE Sbjct: 95 SDWKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSSTGSPSLSSNNGDTIEPLPGLETILEELLKEDGIEAVKINRQGFE 334
BLAST of GT623401 vs. TrEMBL
Match: D7L3G2_ARALY (S1 RNA-binding domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479886 PE=4 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 2.932e-68 Identity = 134/240 (55.83%), Postives = 167/240 (69.58%), Query Frame = 1 Query: 10 SDWKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAVXXXXXXXXXXQIEPLSGLKTILEELLQEDGIYEARISRQGFE 729 SDWK A AY + G VE N GGLLIRF+S++GFLP+PQLSP + +EP K I ++A GS L + V+ DEE + L+ SEK A W KYS+ V++GDVF RV V D+GAF++LRF DGLYHL+GL+HVSEVSWD + DVRD+LR DEV+V + ++ K R SIKQLEDDPLLETLDKVI +D + IEPL GL+TILEELL+EDGI +I+RQGFE Sbjct: 95 SDWKTAKAYCKSGDTFEGEVEGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVSVGDVFTGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSSSGSPSLSSNNGDTIEPLPGLETILEELLKEDGIEAVKINRQGFE 334
BLAST of GT623401 vs. TrEMBL
Match: A9NXR9_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 3.593e-58 Identity = 119/243 (48.97%), Postives = 158/243 (65.02%), Query Frame = 1 Query: 1 RKLSDWKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAVXXXXXXXXXXQIEPLSGLKTILEELLQEDGIYEARISRQGFE 729 R DWK A Y+ + G+V+ NSGG+L+RF+S+ GFLP+ Q+SP ++ K I + A + GS LSL V+ V EE+ L+FSEK A W K+S +N GDVF+ RV V FGAFVNLRFPDG Y++ GL+H+SEVSWDL+ DVRDIL+ D+V+VK+I +N K R SIKQL+ DPL ETLD ++PQ+ EPL L+ I +ELLQE+GI + +I RQ E Sbjct: 83 RSAVDWKKAETYKGNGEIVEGKVDGSNSGGVLVRFHSLQGFLPYSQMSPSLLLKDRSKTISESAKDLIGSTLSLKVIEVSEEENMLIFSEKQAMWEKFS--INEGDVFEGRVSSVTKFGAFVNLRFPDGGYYVDGLVHISEVSWDLVRDVRDILKKGDDVRVKVIQINVEKSRLAFSIKQLQADPLFETLDTLMPQEDTLNLGTSTADGVVPSEPLPDLEQICKELLQEEGITDVKIGRQVLE 323
BLAST of GT623401 vs. TrEMBL
Match: C5WSY9_SORBI (Putative uncharacterized protein Sb01g001480 OS=Sorghum bicolor GN=Sb01g001480 PE=4 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 5.188e-57 Identity = 115/239 (48.12%), Postives = 157/239 (65.69%), Query Frame = 1 Query: 13 DWKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAVXXXXXXXXXXQIEPLSGLKTILEELLQEDGIYEARISRQGFE 729 DW+AA Y+D + V NSGGL++RF S+ GF+P P LSP + +P + I+D+ + G+ +S+ V V+EE++ LVFSEK ASW YS + +GD++D V V +GAFV+LRFPDGLYHL+GL+H+SEVSWDL+ DV+D L D VKV ++ +++ K R SI+QLE+DPLLETLDKVIP + A ++E L GL I ELLQEDGI + + RQ E Sbjct: 72 DWEAARTYKDQGNILTLPVLRANSGGLIVRFNSLQGFVPNPLLSPAHWCEDPKRPIQDITKDLVGTSISVKVAEVNEEERKLVFSEKDASWSTYSSLIKIGDIYDGIVGSVFPYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVQDFLNEGDAVKVIVVNIDTAKSRIALSIRQLEEDPLLETLDKVIPLE--ADQSPDRMMSPSEVELLPGLDGICNELLQEDGITDVQFGRQASE 308
BLAST of GT623401 vs. TrEMBL
Match: B4F9P4_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 5.188e-57 Identity = 114/240 (47.50%), Postives = 160/240 (66.67%), Query Frame = 1 Query: 10 SDWKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAVXXXXXXXXXXQIEPLSGLKTILEELLQEDGIYEARISRQGFE 729 +DW++A A +D +++ V NSGGL++RF S+ GF+P P LSP + ++P + I+D+ + G+ +S+ V V+EE++ LVFSEK ASW YS + +GD++D V V +GAFV+LRFPDGLYHL+GL+H+SEVSWDL+ DV+D L D VKV ++ ++ K R SI+QLE+DPLLETLDKVIP + A ++E L GL I ELLQEDGI + + RQ E Sbjct: 71 ADWESARACKDQGRIFSLPVLRANSGGLIVRFNSLQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWSTYSSRIKIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKVIVVNIDMTKSRIALSIRQLEEDPLLETLDKVIPLE--ADQSPNRMMSPSEVELLPGLDGICNELLQEDGITDVQFGRQALE 308
BLAST of GT623401 vs. TrEMBL
Match: B6TZ31_MAIZE (RNA binding S1 OS=Zea mays PE=2 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 8.850e-57 Identity = 114/240 (47.50%), Postives = 159/240 (66.25%), Query Frame = 1 Query: 10 SDWKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAVXXXXXXXXXXQIEPLSGLKTILEELLQEDGIYEARISRQGFE 729 +DW++A A +D ++ V NSGGL++RF S+ GF+P P LSP + ++P + I+D+ + G+ +S+ V V+EE++ LVFSEK ASW YS + +GD++D V V +GAFV+LRFPDGLYHL+GL+H+SEVSWDL+ DV+D L D VKV ++ ++ K R SI+QLE+DPLLETLDKVIP + A ++E L GL I ELLQEDGI + + RQ E Sbjct: 71 ADWESARACKDQGRIFTLPVLRANSGGLIVRFNSLQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWSTYSSRIKIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKVIVVNIDMTKSRIALSIRQLEEDPLLETLDKVIP--LKADQSPNRMISPSEVELLPGLDGICNELLQEDGITDVQFGRQALE 308
BLAST of GT623401 vs. TrEMBL
Match: C0PNM2_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 2.847e-55 Identity = 114/244 (46.72%), Postives = 160/244 (65.57%), Query Frame = 1 Query: 10 SDWKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAR----EPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAVXXXXXXXXXXQIEPLSGLKTILEELLQEDGIYEARISRQGFE 729 +DW++A A +D +++ V NSGGL++RF S+ GF+P P LSP + + +P + I+D+ + G+ +S+ V V+EE++ LVFSEK ASW YS + +GD++D V V +GAFV+LRFPDGLYHL+GL+H+SEVSWDL+ DV+D L D VKV ++ ++ K R SI+QLE+DPLLETLDKVIP + A ++E L GL I ELLQEDGI + + RQ E Sbjct: 71 ADWESARACKDQGRIFSLPVLRANSGGLIVRFNSLQGFVPNPLLSPAHWCKAKLADPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWSTYSSRIKIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKVIVVNIDMTKSRIALSIRQLEEDPLLETLDKVIPLE--ADQSPNRMMSPSEVELLPGLDGICNELLQEDGITDVQFGRQALE 312
BLAST of GT623401 vs. SwissProt
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4) HSP 1 Score: 82.8037 bits (203), Expect = 2.107e-15 Identity = 54/163 (33.13%), Postives = 81/163 (49.69%), Query Frame = 1 Query: 67 VEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 V A N GG L+R + GF+P +S R + G L L L VDE++ LV S + A + + +G+V V G+ +GAF+++ +SGL+H+SE+S D I + V DEVKV II +++ + R S KQLE +P Sbjct: 126 VFATNRGGALVRIEGLRGFIPGSHIST-----------RKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIG------GVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
BLAST of GT623401 vs. SwissProt
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.005e-15 Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1 Query: 67 VEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 V A N GG L+R + GF+P +S R+ + G L L L VDEE+ LV S + A + + + V V G+ +GAF+++ +SGL+H+SE+S D I + V DE+KV II +++ + R S KQLE +P Sbjct: 125 VFATNRGGALVRIEGLRGFIPGSHISA-----------REAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIG------GVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEP 270
BLAST of GT623401 vs. SwissProt
Match: RS1_BUCBP (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=rpsA PE=3 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.363e-13 Identity = 57/185 (30.81%), Postives = 91/185 (49.19%), Query Frame = 1 Query: 31 AYRDGKL---LYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNL-------GDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 AY+D K L NG+V+ GG + I FLP L + RE H+ G L V+ +D+++ N+V S +A +Y+ NL G + V + D+GAFV+L DGL +H+++++W + +I+ + DEVK+KI+ + K+R +KQL DDP Sbjct: 101 AYKDSKTVVGLINGKVK----GGFTVELEDIRAFLP-GSLVDIRPVRET-MHLE-------GKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVDGL------LHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDP 266 HSP 2 Score: 57.7658 bits (138), Expect = 7.257e-8 Identity = 34/133 (25.56%), Postives = 68/133 (51.13%), Query Frame = 1 Query: 169 HKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAAS---WHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLI-HDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 +K+I + S++ +++L +DEE++ + K W ++SK N G ++ + DFG F+ L + GL+H+S++SW++ + + +EV ++ V+ + R IKQL++DP Sbjct: 313 NKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNPWMEFSKKYNKGSHVVGKIKSITDFGIFIGLE-----GSIDGLVHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDP 440
BLAST of GT623401 vs. SwissProt
Match: RS1_LEULA (40S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.669e-12 Identity = 60/222 (27.03%), Postives = 106/222 (47.75%), Query Frame = 1 Query: 28 IAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHK--------YSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAVXXXXXXXXXXQIEPLSGLKTIL 669 +++ +G + + AV GGL++ + GF+P A+ + + DL N+ + V+ +D L+ S KA + + +SK +++G+V + V + DFGAFV+L DGL +HVSE+S D + + D+L D+V VKI+ +++ K R SIK + P E D++ VL +E L G++ ++ Sbjct: 139 LSFAEGDTVDAKVINAVR-GGLIVDVNGVRGFVP--------ASMVAERFVSDL-NQFKNKDIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVFSK-LSVGEVVEGTVARLTDFGAFVDLGGVDGL------VHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLV 343 HSP 2 Score: 65.4698 bits (158), Expect = 3.481e-10 Identity = 41/133 (30.83%), Postives = 71/133 (53.38%), Query Frame = 1 Query: 169 HKHIRDLANERT-GSILSLLVLLVDEEKQNLVFSEKAAS---WHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 H +++ A+ T G + + +L +D EK + S KA W + + + G V + V V DFGAFV + L + GL+HVS++S I + ++L+ D+V+VK++ + + R S+K LE+ P Sbjct: 264 HDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI-----LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391
BLAST of GT623401 vs. SwissProt
Match: RS1H_BACSU (30S ribosomal protein S1 homolog OS=Bacillus subtilis GN=ypfD PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.180e-12 Identity = 56/191 (29.32%), Postives = 91/191 (47.64%), Query Frame = 1 Query: 46 KLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFS-------EKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVL 597 K ++ V+ V GGL++ + GF+P A H + + G LSLLV+ +D +K ++ S E+A + + + +G V D +V + DFGAFV++ DGL +H+S++S + D++ EVKVK++ V+ R SIK P + +KV P DVL Sbjct: 102 KEVFEAEVKDVVKGGLVVDI-GVRGFIP---------ASLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVL 276 HSP 2 Score: 65.855 bits (159), Expect = 2.665e-10 Identity = 50/178 (28.09%), Postives = 84/178 (47.19%), Query Frame = 1 Query: 58 NGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIR---DLANERTGSILSLLVLLVDEEKQNLVFSEK---AASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLD 573 +G+V+ + G + I G + QLS H H+ D+ E G + + VL VD + + + S K W++ + V GDV + V + FGAFV + L + GL+H+S++S I ++L VKVK++ VN + R S+++LE+ P + D Sbjct: 192 DGKVQRLTDFGAFVDIGGIDGLVHISQLS--------HSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEI-----LPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEETPKADQED 354
BLAST of GT623401 vs. SwissProt
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.082e-11 Identity = 49/180 (27.22%), Postives = 88/180 (48.89%), Query Frame = 1 Query: 16 WKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 W+ + ++ G++ N GG++ + GF+PF Q+S +A E L E + L + VDEE+ LV S + A ++ + +G V V + +GAF+++ ++GL+HVS++S D + D+ +L+ D +KV I+ + + R S K+LE P Sbjct: 174 WERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEEL------LEKE-----IPLKFVEVDEEQSRLVMSNRKAMADSQAQ-LGIGSVVTGTVQSLKPYGAFIDIG------GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 335
BLAST of GT623401 vs. SwissProt
Match: RS1_MYCTU (30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 2.665e-10 Identity = 54/189 (28.57%), Postives = 92/189 (48.68%), Query Frame = 1 Query: 16 WKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKY------SKYVN---LGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 W A ++ G V V GGL++ + GFLP A+ + +RDL G + ++ +D+ + N+V S +A W + S+++N G + V + +FGAFV+L DGL +HVSE+SW I ++++V DEV V+++ V+ + R S+K ++DP Sbjct: 113 WGTIEALKEKDEAVKGTVIEVVKGGLILDI-GLRGFLP--------ASLVEMRRVRDL-QPYIGKEIEAKIIELDKNRNNVVLSRRA--WLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGL------VHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
BLAST of GT623401 vs. SwissProt
Match: RS1_HAEIN (30S ribosomal protein S1 OS=Haemophilus influenzae GN=rpsA PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 3.481e-10 Identity = 39/122 (31.97%), Postives = 66/122 (54.10%), Query Frame = 1 Query: 205 GSILSLLVLLVDEEKQNLVFSEK---AASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHD--VRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 G + ++VL +DEE++ + K A W +++ N GD ++ + DFG F+ L + GL+H+S++SW + + VR + DEV ++ V++VK R IKQLE+DP Sbjct: 325 GDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWSISGEEAVRQYKK-GDEVSAVVLAVDAVKERISLGIKQLEEDP 440 HSP 2 Score: 58.151 bits (139), Expect = 5.557e-8 Identity = 47/172 (27.33%), Postives = 77/172 (44.77%), Query Frame = 1 Query: 61 GRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAA-----SWHKYSKYVNL--GDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 G + GG + + FLP L ARE A+ G L V+ +D+++ N+V S +A S + NL G V + ++GAFV+L DGL +H+++++W + +I+ V DEV VK++ + + R +KQL DP Sbjct: 110 GLIXGKVKGGFTVELNGVRAFLP-GSLVDTRPARE--------ADHLLGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGL------LHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
BLAST of GT623401 vs. SwissProt
Match: RS1_SHIFL (30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 5.937e-10 Identity = 38/134 (28.36%), Postives = 75/134 (55.97%), Query Frame = 1 Query: 169 HKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEK---AASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHD--VRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 +K+I G ++ ++VL +DEE++ + K A W ++++ N GD + ++ + DFG F+ L DG + GL+H+S++SW++ + VR+ + DE+ ++ V++ + R +KQL +DP Sbjct: 313 NKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440 HSP 2 Score: 59.6918 bits (143), Expect = 1.910e-8 Identity = 47/182 (25.82%), Postives = 85/182 (46.70%), Query Frame = 1 Query: 31 AYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAA-----SWHKYSKYVNLGDVFDAR--VCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 AY D + + G + GG + I FLP + + +RD + G L V+ +D+++ N+V S +A S + NL + + + V + D+GAFV+L DGL +H+++++W + +I+ V DE+ VK++ + + R +KQL +DP Sbjct: 101 AYEDAETV-TGVINGKVKGGFTVELNGIRAFLPGSLVDV--------RPVRDTLHLE-GKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGL------LHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266
BLAST of GT623401 vs. SwissProt
Match: RS1_ECOLI (30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA PE=1 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 5.937e-10 Identity = 38/134 (28.36%), Postives = 75/134 (55.97%), Query Frame = 1 Query: 169 HKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEK---AASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHD--VRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 +K+I G ++ ++VL +DEE++ + K A W ++++ N GD + ++ + DFG F+ L DG + GL+H+S++SW++ + VR+ + DE+ ++ V++ + R +KQL +DP Sbjct: 313 NKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440 HSP 2 Score: 59.6918 bits (143), Expect = 1.910e-8 Identity = 47/182 (25.82%), Postives = 85/182 (46.70%), Query Frame = 1 Query: 31 AYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAA-----SWHKYSKYVNLGDVFDAR--VCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 AY D + + G + GG + I FLP + + +RD + G L V+ +D+++ N+V S +A S + NL + + + V + D+GAFV+L DGL +H+++++W + +I+ V DE+ VK++ + + R +KQL +DP Sbjct: 101 AYEDAETV-TGVINGKVKGGFTVELNGIRAFLPGSLVDV--------RPVRDTLHLE-GKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGL------LHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266
BLAST of GT623401 vs. TAIR peptide
Match: AT3G23700.1 (| Symbols: | Nucleic acid-binding proteins superfamily | chr3:8531689-8533742 REVERSE LENGTH=392) HSP 1 Score: 263.462 bits (672), Expect = 8.690e-71 Identity = 134/240 (55.83%), Postives = 167/240 (69.58%), Query Frame = 1 Query: 10 SDWKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQDVLAVXXXXXXXXXXQIEPLSGLKTILEELLQEDGIYEARISRQGFE 729 SDWK A AY + G V+ N GGLLIRF+S++GFLP+PQLSP + +EP K I ++A GS L + V+ DEE + L+ SEK A W KYS+ VN+GDVF+ RV V D+GAF++LRF DGLYHL+GL+HVSEVSWD + DVRD+LR DEV+V + ++ K R SIKQLEDDPLLETLDKVI +D IEPL GL+TILEELL+EDGI +I+RQGFE Sbjct: 95 SDWKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSSTGSPSLSSNNGDTIEPLPGLETILEELLKEDGIEAVKINRQGFE 334
BLAST of GT623401 vs. TAIR peptide
Match: AT5G30510.1 (| Symbols: RPS1, ARRPS1 | ribosomal protein S1 | chr5:11619262-11621223 REVERSE LENGTH=416) HSP 1 Score: 67.781 bits (164), Expect = 6.999e-12 Identity = 51/180 (28.33%), Postives = 87/180 (48.33%), Query Frame = 1 Query: 16 WKAAIAYRDGKLLYNGRVEAVNSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDP 555 W+ + ++ +V N GGL+ + GF+PF Q+S AA E L E + L + VDEE+ LV S + A ++ + +G V V + +GAF+++ ++GL+HVS++S D + D+ +L+ D +KV I+ + + R S K+LE P Sbjct: 177 WERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEEL------LEKE-----IPLKFVEVDEEQTKLVLSNRKAVADSQAQ-LGIGSVVLGVVQSLKPYGAFIDIG------GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 338
BLAST of GT623401 vs. TAIR peptide
Match: AT1G71720.1 (| Symbols: | Nucleic acid-binding proteins superfamily | chr1:26983744-26985893 FORWARD LENGTH=500) HSP 1 Score: 57.7658 bits (138), Expect = 7.242e-9 Identity = 49/166 (29.52%), Postives = 78/166 (46.99%), Query Frame = 1 Query: 79 NSGGLLIRFYSIMGFLPFPQLSPMYAAREPHKHIRDLANERTGSILSLLVLLVDEEKQNLVFSEKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDK 576 N+GGLL R + F+P +L K E G + + ++E+K +L+ SEK A W K Y+ G + + V + +GA V L G SGL+H+S ++ I V D+L+V + VKV ++ + + SI LE +P L D+ Sbjct: 294 NTGGLLTRIEGLRAFIPKQELVKKVNTFTELK-------ENVGRRFLVQITRLNEDKNDLILSEKVA-WEKL--YLREGTLLEGTVVKILPYGAQVKL----GDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVV-KSLFPDKISLSIADLESEPGLFISDR 444
BLAST of GT623401 vs. TAIR peptide
Match: AT1G12800.1 (| Symbols: | Nucleic acid-binding, OB-fold-like protein | chr1:4361778-4365189 REVERSE LENGTH=767) HSP 1 Score: 52.7582 bits (125), Expect = 2.330e-7 Identity = 35/136 (25.74%), Postives = 60/136 (44.12%), Query Frame = 1 Query: 205 GSILSLLVLLVDEEKQNLVFS-------EKAASWHKYSKYVNLGDVFDARVCGVHDFGAFVNLRFPDGLYHLSGLIHVSEVSWDLIHDVRDILRVADEVKVKIIGVNSVKLRFFASIKQLEDDPLLETLDKVIPQD 591 G + + V++ + + L+FS E+ + +GDV + + FG F L + L+H SEVSWD D ++ V+ K+ ++ R F S+K++ DPL E L+ V+ D Sbjct: 539 GQKIKVNVVMANRNSRKLIFSMRPRENEEEVEKKRTLMAKLRVGDVVKCCIKKITYFGIFCELE------GVPALVHQSEVSWDATLDPASYFKIGQIVEAKVHQLDFALERIFLSLKEITPDPLTEALESVVGGD 668 The following BLAST results are available for this feature:
BLAST of GT623401 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 10
BLAST of GT623401 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot) Total hits: 10
BLAST of GT623401 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT623401 ID=GT623401; Name=GT623401; organism=Lens culinaris; type=EST; length=731bpback to top |