GT625906

EST Overview
NameGT625906
Unique NameGT625906
TypeEST
OrganismLens culinaris (lentil)
Sequence length657
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT625906 vs. TrEMBL
Match: C5WQT8_SORBI (Putative uncharacterized protein Sb01g040640 OS=Sorghum bicolor GN=Sb01g040640 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.518e-19
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  102 AATTASPSKSQIISLFRSFIRVSRQFPDYNIREYTKRRAVDAFRQNATLXXXXXXXXXXXXXXXQLEVAKRQAVVYSLYVPPLPSVMEIQ 371
            AA  A+P+++++++LFRS +R ++QF DYNIREYT+RRA DAFR+N  L               QLEVAKRQA+VYSLY P   SVME++
Sbjct:    3 AAAAAAPTRTEVLALFRSLLRTAKQFSDYNIREYTRRRAADAFRENRALADAPAAAAAFSEGKKQLEVAKRQALVYSLYAPKAKSVMELK 92          
BLAST of GT625906 vs. TrEMBL
Match: B6TSM6_MAIZE (Catalytic/ oxidoreductase, acting on NADH or NADPH OS=Zea mays PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.675e-18
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 3
Query:  114 ASPSKSQIISLFRSFIRVSRQFPDYNIREYTKRRAVDAFRQNATLXXXXXXXXXXXXXXXQLEVAKRQAVVYSLYVPPLPSVMEIQ 371
            A+P++++++SLFRS +R ++QF DYNIREYT+RRA DAFR+N+ L               QLEVAKRQAV+YS+Y P   SVME++
Sbjct:    4 AAPTRAEVLSLFRSLLRTAKQFSDYNIREYTRRRAADAFRENSALSDAPSAAALFAVGKQQLEVAKRQAVIYSIYAPKAKSVMELK 89          
BLAST of GT625906 vs. TrEMBL
Match: Q0J724_ORYSJ (Os08g0239000 protein OS=Oryza sativa subsp. japonica GN=Os08g0239000 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.312e-18
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 3
Query:  117 SPSKSQIISLFRSFIRVSRQFPDYNIREYTKRRAVDAFRQNATLXXXXXXXXXXXXXXXQLEVAKRQAVVYSLYVPPLPSVMEIQ 371
            +P++++ +SLFRS +R +RQF DYNIREYT+RRA DAFR+N  L               QLEVAKRQAVVYSLY P   S+ME++
Sbjct:    4 APTRAEALSLFRSLLRTARQFSDYNIREYTRRRAADAFRENRALGDTAAAAAAFADGKKQLEVAKRQAVVYSLYAPKAKSIMEMK 88          
BLAST of GT625906 vs. TrEMBL
Match: B6SQD4_MAIZE (Catalytic/ oxidoreductase, acting on NADH or NADPH OS=Zea mays PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.312e-18
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 3
Query:  114 ASPSKSQIISLFRSFIRVSRQFPDYNIREYTKRRAVDAFRQNATLXXXXXXXXXXXXXXXQLEVAKRQAVVYSLYVPPLPSVMEIQ 371
            A+P++++++SLFRS +R +++F DYNIREYT+RRA D+FR+N  L               QLEVAKRQAVVYSLY P   SVME++
Sbjct:    4 AAPTRAEVLSLFRSLLRTAKKFSDYNIREYTRRRAADSFRENRALADASAAAAAFSEGKKQLEVAKRQAVVYSLYAPKAKSVMELK 89          
BLAST of GT625906 vs. TrEMBL
Match: A9PDG3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_833143 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.312e-18
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  111 TASPSKSQIISLFRSFIRVSRQFPDYNIREYTKRRAVDAFRQNATLXXXXXXXXXXXXXXXQLEVAKRQAVVYSLYVPPLPSVMEIQN 374
            +A+ S+ +I+ L+RS +R +RQF DYNIREYTKRR +DAFRQN  L               QL+VAKRQAVVYSLY P + SVME Q+
Sbjct:    3 SAAISRGEILYLYRSLLRTARQFCDYNIREYTKRRTIDAFRQNQNLTDSLAISAAYSDGKTQLDVAKRQAVVYSLYAPTIKSVMEAQS 90          
BLAST of GT625906 vs. TrEMBL
Match: Q948I3_ORYSA (Putative CGI-203 homolog OS=Oryza sativa GN=OSJNBa0060A14.13 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.086e-17
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 3
Query:  114 ASPSKSQIISLFRSFIRVSRQFPDYNIREYTKRRAVDAFRQNATLXXXXXXXXXXXXXXXQLEVAKRQAVVYSLYVPPLPSVMEIQ 371
            A+P++++ +SLFRS +R +RQF DYNIREY +RRA DAFR+N  L               QLEVAKRQAVVYSLY P   S+ME++
Sbjct:    3 AAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRALGDAVAAAAVFADGKKQLEVAKRQAVVYSLYAPKAKSIMEMK 88          
BLAST of GT625906 vs. TrEMBL
Match: Q7XEU6_ORYSJ (Complex 1 family protein, putative, expressed OS=Oryza sativa subsp. japonica GN=Os10g0406600 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.086e-17
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 3
Query:  114 ASPSKSQIISLFRSFIRVSRQFPDYNIREYTKRRAVDAFRQNATLXXXXXXXXXXXXXXXQLEVAKRQAVVYSLYVPPLPSVMEIQ 371
            A+P++++ +SLFRS +R +RQF DYNIREY +RRA DAFR+N  L               QLEVAKRQAVVYSLY P   S+ME++
Sbjct:    3 AAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRALGDAVAAAAVFADGKKQLEVAKRQAVVYSLYAPKAKSIMEMK 88          
BLAST of GT625906 vs. TrEMBL
Match: B9RLS6_RICCO (Protein C6orf149, putative OS=Ricinus communis GN=RCOM_1470530 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.086e-17
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  123 SKSQIISLFRSFIRVSRQFPDYNIREYTKRRAVDAFRQNATLXXXXXXXXXXXXXXXQLEVAKRQAVVYSLYVPPLPSVMEIQNKP 380
            SK +I+SL RS +R +RQF DYNIREYTKRR +DAFR+N  L               QL+VAKRQ VVYSLY P + SVME ++ P
Sbjct:    3 SKGEILSLCRSLLRTARQFSDYNIREYTKRRTIDAFRENRNLTDPSSISAAFSDGKAQLDVAKRQVVVYSLYAPKIKSVMETKSSP 88          
BLAST of GT625906 vs. TrEMBL
Match: A2Z744_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_33519 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.086e-17
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 3
Query:  114 ASPSKSQIISLFRSFIRVSRQFPDYNIREYTKRRAVDAFRQNATLXXXXXXXXXXXXXXXQLEVAKRQAVVYSLYVPPLPSVMEIQ 371
            A+P++++ +SLFRS +R +RQF DYNIREY +RRA DAFR+N  L               QLEVAKRQAVVYSLY P   S+ME++
Sbjct:    3 AAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRALGDAAAAAAVFADGKKQLEVAKRQAVVYSLYAPKAKSIMEMK 88          
BLAST of GT625906 vs. TrEMBL
Match: A2YSQ8_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28356 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.037e-17
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 3
Query:  117 SPSKSQIISLFRSFIRVSRQFPDYNIREYTKRRAVDAFRQNATLXXXXXXXXXXXXXXXQLEVAKRQAVVYSLYVPPLPSVMEIQ 371
            +P++++ +SLFRS +R +RQF DYNIREYT+RR VDAF +N  L               QLEVAKRQAVVYSLY P   S+ME++
Sbjct:    4 APTRAEALSLFRSLLRTARQFSDYNIREYTRRRTVDAFCENRVLGDAVAEAAAFADGKKQLEVAKRQAVVYSLYAPKAKSIMEMK 88          
BLAST of GT625906 vs. TAIR peptide
Match: AT5G61220.1 (| Symbols: | LYR family of Fe/S cluster biogenesis protein | chr5:24626057-24626320 REVERSE LENGTH=87)

HSP 1 Score: 72.0182 bits (175), Expect = 3.142e-13
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  123 SKSQIISLFRSFIRVSRQFPDYNIREYTKRRAVDAFRQNATLXXXXXXXXXXXXXXXQLEVAKRQAVVYSLYVPPLPSVMEIQ 371
            S S+++SL R+ +R  RQFPDYNIREY+KRR +D FR N  L               QL VA+R   VY  Y P   ++ME++
Sbjct:    3 SSSEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLFVAERVLKVYLAYPPKTKNIMEVK 85          
The following BLAST results are available for this feature:
BLAST of GT625906 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C5WQT8_SORBI7.518e-1952.22Putative uncharacterized protein Sb01g040640 OS=So... [more]
B6TSM6_MAIZE1.675e-1852.33Catalytic/ oxidoreductase, acting on NADH or NADPH... [more]
Q0J724_ORYSJ8.312e-1854.12Os08g0239000 protein OS=Oryza sativa subsp. japoni... [more]
B6SQD4_MAIZE8.312e-1852.33Catalytic/ oxidoreductase, acting on NADH or NADPH... [more]
A9PDG3_POPTR8.312e-1854.55Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q948I3_ORYSA1.086e-1753.49Putative CGI-203 homolog OS=Oryza sativa GN=OSJNBa... [more]
Q7XEU6_ORYSJ1.086e-1753.49Complex 1 family protein, putative, expressed OS=O... [more]
B9RLS6_RICCO1.086e-1754.65Protein C6orf149, putative OS=Ricinus communis GN=... [more]
A2Z744_ORYSI1.086e-1753.49Putative uncharacterized protein OS=Oryza sativa s... [more]
A2YSQ8_ORYSI7.037e-1752.94Putative uncharacterized protein OS=Oryza sativa s... [more]
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BLAST of GT625906 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G61220.13.142e-1343.37| Symbols: | LYR family of Fe/S cluster biogenesi... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 6..15
score
NoneNo IPR availableSEGsegsegcoord: 1..17
score
NoneNo IPR availablePANTHERPTHR13166PROTEIN C6ORF149coord: 15..102
score: 2.4
NoneNo IPR availableSEGsegsegcoord: 60..74
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT625906 ID=GT625906; Name=GT625906; organism=Lens culinaris; type=EST; length=657bp
CCCTCTCGCATCCCTGCGACCACCACCACACCCGCCACGATTCTCCGCGT
TCGAGCGTCGCTACCAATTGATTCACCTTGCTCTGCGTAGCGGTGACTAT
GGCGGCAACAACTGCATCTCCTTCAAAATCCCAAATCATATCCCTCTTCC
GTTCCTTCATACGAGTATCTCGTCAGTTCCCAGATTACAACATTAGGGAA
TACACTAAACGACGTGCCGTTGATGCGTTTCGTCAAAACGCAACACTTTC
TGAATCTTCTTCAGTGTCCGAAGCTTTTTCTTTTGGAAAGTCTCAGCTTG
AAGTAGCTAAACGACAGGCCGTTGTTTATTCTCTTTATGTTCCTCCTCTT
CCCAGTGTTATGGAGATTCAGAATAAACCCATTTAATCAAGGTTATGTTC
TGTTTATCATAGGACAGTCAGAAACATGTGTTTCCCTACTTGGCATTCGT
CAATTATGGAATGGGCAATGAAGTGAAAATCTCGAGTTTACAACTTTCTC
CAGGAAAGCTATTATAGCTCTTTAGTAGTAGTTAACAATATTTTTGGAGG
ACAAGTTTTTGTATGCATATTTAAAGTTGAGTGACATTTTTAAATAATTT
AAAACCAATTTTATGTTGTTAGAATTGGAATGAGTCATTTTAGTTGGTCT
GTCTGTA
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