GT626055

EST Overview


Name	GT626055
Unique Name	GT626055
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	719

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

[Close]

BLAST of GT626055 vs. TrEMBL
Match: Q9M4R0_AVIMR (Ubiquitin carrier protein OS=Avicennia marina GN=UBC PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.008e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. TrEMBL
Match: Q49RB5_POPTO (Ubiquitin carrier protein OS=Populus tomentosa PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.008e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. TrEMBL
Match: Q3HVP8_SOLTU (Ubiquitin carrier protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.008e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. TrEMBL
Match: Q2PYX5_SOLTU (Ubiquitin carrier protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.008e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. TrEMBL
Match: D7TND2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_26.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00020056001 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.008e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:   40 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 77

[Close]

BLAST of GT626055 vs. TrEMBL
Match: D7SIE6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00008045001 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.008e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. TrEMBL
Match: D7LQ59_ARALY (Ubiquiting-conjugating enzyme 2 OS=Arabidopsis lyrata subsp. lyrata GN=ATUBC2 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.008e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. TrEMBL
Match: D7KBJ8_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_471614 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.008e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. TrEMBL
Match: C6SWZ7_SOYBN (Ubiquitin carrier protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.008e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. TrEMBL
Match: C6SVL7_SOYBN (Ubiquitin carrier protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.008e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. SwissProt
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.666e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. SwissProt
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.666e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. SwissProt
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.013e-14
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQ DPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. SwissProt
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.028e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAP DNNI LWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNA 38

[Close]

BLAST of GT626055 vs. SwissProt
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.256e-13
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPAR+RLMRDFKRLQ+DPPAG+SGAP +NNIM+WNA
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNA 38

[Close]

BLAST of GT626055 vs. SwissProt
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.256e-13
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPAR+RLMRDFKRLQ+DPPAG+SGAP +NNIM+WNA
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNA 38

[Close]

BLAST of GT626055 vs. SwissProt
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.256e-13
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP DNNIM+WNA
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNA 38

[Close]

BLAST of GT626055 vs. SwissProt
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.759e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +NNIM WNA
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNA 38

[Close]

BLAST of GT626055 vs. SwissProt
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.759e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +NNIM WNA
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNA 38

[Close]

BLAST of GT626055 vs. SwissProt
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.759e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +NNIM WNA
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNA 38

[Close]

BLAST of GT626055 vs. TAIR peptide
Match: AT2G02760.1 (| Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152)

HSP 1 Score: 82.4185 bits (202), Expect = 2.698e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. TAIR peptide
Match: AT1G14400.2 (| Symbols: UBC1, ATUBC1 | ubiquitin carrier protein 1 | chr1:4927294-4928136 REVERSE LENGTH=152)

HSP 1 Score: 82.4185 bits (202), Expect = 2.698e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. TAIR peptide
Match: AT1G14400.1 (| Symbols: UBC1, ATUBC1 | ubiquitin carrier protein 1 | chr1:4927294-4928136 REVERSE LENGTH=152)

HSP 1 Score: 82.4185 bits (202), Expect = 2.698e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 38

[Close]

BLAST of GT626055 vs. TAIR peptide
Match: AT5G62540.1 (| Symbols: UBC3 | ubiquitin-conjugating enzyme 3 | chr5:25104679-25105465 FORWARD LENGTH=150)

HSP 1 Score: 71.2478 bits (173), Expect = 6.219e-13
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 3

Query:  210 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNA 323
            M+TPA+KRLM DFKRLQ+DPP GISGAPQDNNIM WNA
Sbjct:    1 MTTPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNA 38

The following BLAST results are available for this feature:

BLAST of GT626055 vs. TrEMBL
BLAST of GT626055 vs. SwissProt
BLAST of GT626055 vs. TAIR peptide

BLAST of GT626055 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q9M4R0_AVIMR	4.008e-14	100.00	Ubiquitin carrier protein OS=Avicennia marina GN=U...	[more]
Q49RB5_POPTO	4.008e-14	100.00	Ubiquitin carrier protein OS=Populus tomentosa PE=...	[more]
Q3HVP8_SOLTU	4.008e-14	100.00	Ubiquitin carrier protein OS=Solanum tuberosum PE=...	[more]
Q2PYX5_SOLTU	4.008e-14	100.00	Ubiquitin carrier protein OS=Solanum tuberosum PE=...	[more]
D7TND2_VITVI	4.008e-14	100.00	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7SIE6_VITVI	4.008e-14	100.00	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7LQ59_ARALY	4.008e-14	100.00	Ubiquiting-conjugating enzyme 2 OS=Arabidopsis lyr...	[more]
D7KBJ8_ARALY	4.008e-14	100.00	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
C6SWZ7_SOYBN	4.008e-14	100.00	Ubiquitin carrier protein OS=Glycine max PE=2 SV=1	[more]
C6SVL7_SOYBN	4.008e-14	100.00	Ubiquitin carrier protein OS=Glycine max PE=2 SV=1	[more]

BLAST of GT626055 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
UBC2_ARATH	2.666e-15	100.00	Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t...	[more]
UBC1_ARATH	2.666e-15	100.00	Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t...	[more]
UBC2_MEDSA	1.013e-14	97.37	Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati...	[more]
UBC2_WHEAT	5.028e-14	94.74	Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest...	[more]
UBE2A_MOUSE	4.256e-13	84.21	Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ...	[more]
UBE2A_HUMAN	4.256e-13	84.21	Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ...	[more]
UBCD6_DROME	4.256e-13	84.21	Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi...	[more]
UBE2B_RAT	2.759e-12	81.58	Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg...	[more]
UBE2B_RABIT	2.759e-12	81.58	Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c...	[more]
UBE2B_MOUSE	2.759e-12	81.58	Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ...	[more]

BLAST of GT626055 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT2G02760.1	2.698e-16	100.00	\| Symbols: ATUBC2, UBC2 \| ubiquiting-conjugating e...	[more]
AT1G14400.2	2.698e-16	100.00	\| Symbols: UBC1, ATUBC1 \| ubiquitin carrier protei...	[more]
AT1G14400.1	2.698e-16	100.00	\| Symbols: UBC1, ATUBC1 \| ubiquitin carrier protei...	[more]
AT5G62540.1	6.219e-13	84.21	\| Symbols: UBC3 \| ubiquitin-conjugating enzyme 3 \|...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 55..68 score

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT626055 ID=GT626055; Name=GT626055; organism=Lens culinaris; type=EST; length=719bp
TTTTCACCTTTTGCGTTTCTTACCGATAAAGCTCACCGTGAGATTCTGCC
GAATTTTATCGTCAAATCCTTTTCTTACGATTGATTATGGAAATTCTACG
AAATTCAATTTTAATTTCACGGTTTTCTTGATGTTTCTTTGTGTCTCTCA
TGCATATATTGATCTAGGTTTTCTTTTTTGTGGCTGTTGGTTTTTTCTAG
GTGGTAGCGATGTCGACTCCTGCTAGGAAGAGACTGATGAGAGATTTTAA
GAGGCTGCAACAAGATCCGCCAGCAGGAATCAGTGGTGCTCCTCAGGATA
ACAACATCATGCTGTGGAATGCTGTCATATTTGGGTGAGTTGTATTGGTA
ATTGTATAAAGATGCATAGGATTATGTATACTTGTATAATTTAGTCACTT
TTGTTTTATTTTATTTCACTTTGTTTAAGTATGAATGGATAAGCAATTTC
TGCTTTCTTGTCTGCTTTGGATTGCAGTCCTGATGATACTCCATGGGATG
GAGGTGAGTCAATTCTTTACTTCAGCTCCTATCGGTAAATAATTGTGATA
CCGGTGTCAATTAGGTTATTTAATAATTCTATTGTATTGATTGTTTTATG
TTCTGTTATATTAATTGATTTTGGTTTTTCAATGGCATTAGAATTATGTT
GCAAAGAAAGTTGTAGTCCTTCCATCCCCTAAAAGATTTTGGGTTGCTTG
ATAGGTATCTAGGCTATCT

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