GT626723

EST Overview
NameGT626723
Unique NameGT626723
TypeEST
OrganismLens culinaris (lentil)
Sequence length645
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Homology
BLAST of GT626723 vs. TrEMBL
Match: Q9S7T4_ARATH (F18B13.11 protein OS=Arabidopsis thaliana GN=F19K16.1 PE=4 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.729e-31
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 2
Query:   29 SDFEFCISDMSCLQPYKSELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQHKSIPKNVSNSLE 373
            SDFE  IS++   Q  KSELD+YLEE  +    +F++L WW LN++KYPTLS+MA+D+LS+   TVSPDSVFDT V+KMDN+R+SL   TLEAL CAKDW +H S      N+L+
Sbjct:  959 SDFELYISEVGSHQQMKSELDQYLEESLIPRSQDFEVLGWWSLNRTKYPTLSKMAADVLSVPFCTVSPDSVFDTEVKKMDNYRSSLRHVTLEALFCAKDWFKHSSSNSTSENNLK 1073          
BLAST of GT626723 vs. TrEMBL
Match: B9MWN7_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_288875 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.360e-31
Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 2
Query:   26 LSDFEFCISDMSCLQPYKSELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQHKS 343
            LSDF+  IS+++  Q +KSELD+YLEE  L    EFD+L WW+LN+ KYPTLS+MA DILS+ +STV+PDSVFDT  +++D++R+SL   TLEALICAKDWLQH S
Sbjct:  523 LSDFDIYISEITSGQHFKSELDQYLEESLLPRVHEFDVLGWWKLNRLKYPTLSKMAVDILSIPVSTVTPDSVFDTENKRIDSYRSSLRPVTLEALICAKDWLQHGS 628          
BLAST of GT626723 vs. TrEMBL
Match: D7U155_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00017364001 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.851e-30
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = 2
Query:    5 LFVDEGELSDFEFCISDMSCLQPYKSELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQHKSIPKNVS 361
            L  D   LSDF+  IS++S  Q  +SELD+YL+E  +    +FD+L WW+LN+ KYPTLSRMASDILS+ I+TV PD+VFDT  RK+D++R+SL   TLEALICAKDWLQ+ +   ++S
Sbjct:  168 LLSDSDRLSDFDVYISEISGGQDMRSELDQYLDESLMPRSQDFDVLAWWKLNKLKYPTLSRMASDILSIPITTVGPDNVFDTVGRKIDSYRSSLRPLTLEALICAKDWLQNGATEPDMS 286          
BLAST of GT626723 vs. TrEMBL
Match: B9N178_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_783422 PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.417e-30
Identity = 66/106 (62.26%), Postives = 84/106 (79.25%), Query Frame = 2
Query:   26 LSDFEFCISDMSCLQPYKSELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQHKS 343
            LSDF+  IS+++  Q  KSELD+YLEE  L    EFD++ WW+LN+ KYPTLS+MA+DILS+ +STV+PDSVFDT  RK+D++R SL   TLEAL+CAKDWLQH S
Sbjct:  976 LSDFDIYISEITSGQHLKSELDQYLEESLLPRVHEFDVVGWWKLNRLKYPTLSKMAADILSIPVSTVAPDSVFDTENRKIDSYRGSLLPITLEALVCAKDWLQHGS 1081          
BLAST of GT626723 vs. TrEMBL
Match: A5C993_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014020 PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.417e-30
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = 2
Query:    5 LFVDEGELSDFEFCISDMSCLQPYKSELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQHKSIPKNVS 361
            L  D   LSDF+  IS++S  Q  +SELD+YL+E  +    +FD+L WW+LN+ KYPTLSRMASDILS+ I+TV PD+VFDT  RK+D++R+SL   TLEALICAKDWLQ+ +   ++S
Sbjct:  918 LLSDSDRLSDFDVYISEISGGQDMRSELDQYLDESLMPRSQDFDVLAWWKLNKLKYPTLSRMASDILSIPITTVGPDNVFDTVGRKIDSYRSSLRPVTLEALICAKDWLQNGATEPDMS 1036          
BLAST of GT626723 vs. TrEMBL
Match: D7TC56_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00015587001 PE=4 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.262e-28
Identity = 64/115 (55.65%), Postives = 85/115 (73.91%), Query Frame = 2
Query:   26 LSDFEFCISDMSCLQPYKSELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQHKSIPKNVSNSL 370
            LSDF+  I + S  Q  KSELD+YLEE  L    EFD+L WW+LN+ KYPTLS+MA DILS+ +S+V+ +S++DT  ++MD +R SL   T+EALICAKDWLQ+ S P  +SN+L
Sbjct:  636 LSDFDVYILETSS-QQMKSELDQYLEESVLPRVHEFDLLGWWKLNKLKYPTLSKMARDILSIPVSSVAVESIYDTVGKEMDEYRNSLRPETVEALICAKDWLQYGSSPPEISNAL 749          
BLAST of GT626723 vs. TrEMBL
Match: A5C9Y9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023069 PE=4 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.262e-28
Identity = 64/115 (55.65%), Postives = 85/115 (73.91%), Query Frame = 2
Query:   26 LSDFEFCISDMSCLQPYKSELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQHKSIPKNVSNSL 370
            LSDF+  I + S  Q  KSELD+YLEE  L    EFD+L WW+LN+ KYPTLS+MA DILS+ +S+V+ +S++DT  ++MD +R SL   T+EALICAKDWLQ+ S P  +SN+L
Sbjct:   77 LSDFDVYILETSS-QQMKSELDQYLEESVLPRVHEFDLLGWWKLNKLKYPTLSKMARDILSIPVSSVAVESIYDTVGKEMDEYRNSLRPETVEALICAKDWLQYGSSPPEISNAL 190          
BLAST of GT626723 vs. TrEMBL
Match: Q9XI39_ARATH (At1g15300 OS=Arabidopsis thaliana GN=F9L1.24 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.123e-27
Identity = 62/116 (53.45%), Postives = 86/116 (74.14%), Query Frame = 2
Query:    2 SLFVDEGE-LSDFEFCISDMSCLQPYKSELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQHKSI 346
            S  +  GE LSDFE  ++DM+      +ELD+YLEE  +    +F++L+WWR+N + YPTLS+MA D+LS+  STVSPDSVFDT V++MDN+RTSL   TLEAL+C KDWL++ ++
Sbjct:  690 STLITIGESLSDFEMYMTDMN------TELDQYLEENLIPRSEDFNVLSWWRVNNTNYPTLSKMAVDLLSVPFSTVSPDSVFDTEVKQMDNYRTSLPGETLEALLCTKDWLKNGTL 799          
BLAST of GT626723 vs. TrEMBL
Match: B9IMV0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_578909 PE=4 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.266e-27
Identity = 61/124 (49.19%), Postives = 91/124 (73.39%), Query Frame = 2
Query:    2 SLFVDEGELSDFEFCISDMSCLQPYKSELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQHKS-IPKNVSNSL 370
            +L  D G L+DF+  I + +  Q  +SELD+YLEE  L    E D+L+WW++N+ KYPTLS++A DIL++ +ST  PDSVFDT ++++D++R+SL   T+EAL+CAKDWLQ+ S  P  +SN++
Sbjct:  540 TLLSDHG-LTDFDMYIMETTS-QNTRSELDQYLEESLLPRLQELDLLDWWKMNKLKYPTLSKLARDILTIQVSTADPDSVFDTEIKELDSYRSSLRPETVEALVCAKDWLQYGSAAPAEISNAI 661          
BLAST of GT626723 vs. TrEMBL
Match: B9NBV1_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_281356 PE=4 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.046e-26
Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = 2
Query:   11 VDEGELSDFEFCISDMSCLQPYKSELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQHKSIPKNVSNSL 370
            +   EL+DF+  +   S  Q  KSEL++YLEE  L    E D+L WW  N+ +YP LS MA DIL+M +ST  PDSVFDT ++++D +R+SL   T+EAL+CAKDWLQ++S  + VSN+L
Sbjct:  519 ISYNELTDFDAYVETTS--QNKKSELEQYLEESLLPRFQEMDVLKWWEENKLQYPVLSTMARDILTMQVSTADPDSVFDTEIKELDEYRSSLRPETVEALVCAKDWLQYRSATE-VSNAL 635          
BLAST of GT626723 vs. SwissProt
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.168e-18
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 2
Query:   17 EGELSDFEFCISDMSCLQPYKS-ELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWL 331
            E E  +F+  + ++      +S ELD+Y+ EP L    +FDIL+WWR   ++YP L+++A D+L++ +STV+ +S F  G R +D +R  L S  +EALIC KDW+
Sbjct:  615 ENEDDEFQNYLHELKDYDQVESNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 720          
BLAST of GT626723 vs. SwissProt
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.168e-18
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 2
Query:   17 EGELSDFEFCISDMSCLQPYKS-ELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWL 331
            E E  +F+  + ++      +S ELD+Y+ EP L    +FDIL+WWR   ++YP L+++A D+L++ +STV+ +S F  G R +D +R  L S  +EALIC KDW+
Sbjct:  646 ENEDDEFQNYLHELKDYDQVESNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 751          
BLAST of GT626723 vs. TAIR peptide
Match: AT3G42170.1 (| Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696)

HSP 1 Score: 108.997 bits (271), Expect = 2.244e-24
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 2
Query:   26 LSDFEFCISDMSCLQPYKSELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQHKSIPKNVSNS 367
            LSDF+  I + +  Q  KSELD+YL+E  L    EFD+L+WW+ N+ KYPTLS+MA DILS+ +S  + D VFD   R+MD ++TSL   T+EALICA++WL    +  N S+S
Sbjct:  574 LSDFDTYIMETTG-QNLKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWL----LESNASSS 682          
BLAST of GT626723 vs. TAIR peptide
Match: AT1G18560.1 (| Symbols: | BED zinc finger ;hAT family dimerisation domain | chr1:6385614-6388005 FORWARD LENGTH=690)

HSP 1 Score: 62.3882 bits (150), Expect = 2.408e-10
Identity = 25/84 (29.76%), Postives = 51/84 (60.71%), Query Frame = 2
Query:   83 ELDEYLEEPQLSEETEFDILNWWRLNQSKYPTLSRMASDILSMSISTVSPDSVFDTGVRKMDNHRTSLESRTLEALICAKDWLQ 334
            EL +YL E  +  +T  D+L+WW++N  +YP LS MA D L++  ++ +P+ +F     ++D  +  +   + +++IC + W++
Sbjct:  569 ELTQYLSESIVPMQT--DVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWIE 650          
The following BLAST results are available for this feature:
BLAST of GT626723 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q9S7T4_ARATH3.729e-3156.52F18B13.11 protein OS=Arabidopsis thaliana GN=F19K1... [more]
B9MWN7_POPTR6.360e-3162.26Predicted protein (Fragment) OS=Populus trichocarp... [more]
D7U155_VITVI1.851e-3056.30Whole genome shotgun sequence of line PN40024, sca... [more]
B9N178_POPTR2.417e-3062.26Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A5C993_VITVI2.417e-3056.30Putative uncharacterized protein OS=Vitis vinifera... [more]
D7TC56_VITVI2.262e-2855.65Whole genome shotgun sequence of line PN40024, sca... [more]
A5C9Y9_VITVI2.262e-2855.65Putative uncharacterized protein OS=Vitis vinifera... [more]
Q9XI39_ARATH1.123e-2753.45At1g15300 OS=Arabidopsis thaliana GN=F9L1.24 PE=2 ... [more]
B9IMV0_POPTR3.266e-2749.19Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9NBV1_POPTR8.046e-2650.00Predicted protein (Fragment) OS=Populus trichocarp... [more]
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BLAST of GT626723 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
TRAC9_MAIZE6.168e-1840.57Putative AC9 transposase OS=Zea mays PE=4 SV=1[more]
TRA1_MAIZE6.168e-1840.57Putative AC transposase OS=Zea mays PE=2 SV=2[more]
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BLAST of GT626723 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G42170.12.244e-2450.00| Symbols: | BED zinc finger ;hAT family dimerisa... [more]
AT1G18560.12.408e-1029.76| Symbols: | BED zinc finger ;hAT family dimerisa... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT dimerisationPFAMPF05699hATCcoord: 28..110
score: 5
IPR012337Ribonuclease H-likeSUPERFAMILY53098Ribonuclease H-likecoord: 8..115
score: 4.4

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT626723 ID=GT626723; Name=GT626723; organism=Lens culinaris; type=EST; length=645bp
CTCTCTTTTTGTTGATGAAGGTGAACTTTCCGACTTTGAGTTTTGTATAT
CTGATATGTCTTGTTTGCAGCCATATAAGTCAGAATTAGACGAGTATTTG
GAAGAACCTCAACTGTCTGAGGAAACAGAATTTGATATTCTGAATTGGTG
GAGGTTAAATCAATCGAAATATCCAACATTGTCTAGAATGGCATCTGATA
TCTTGTCTATGTCAATATCTACTGTGTCTCCTGATTCTGTTTTTGACACA
GGAGTAAGAAAAATGGATAATCACCGGACTTCTTTAGAATCCCGTACACT
AGAAGCTCTTATTTGTGCCAAGGATTGGTTGCAGCATAAATCCATACCCA
AAAATGTTTCAAATTCACTTGAGACAACAAAACTTTAGAGATAGGTGATA
GATTCTCAAGTAGCTCTTAGGTATTCATTCAAAGTTTTGAAACCGTTATT
CAGCTCATTTAATTTGTGTGATAATTGTCAATATATGTTTTGTAGAATAG
AAAGTTTAATTCTATTCCAACTTCTTTTTGAAAACTTAACTCATGTGAGT
TACAATTAGCAACTGCTTTCACATACTTTCATAGTTTGAATTGAAAACTA
GAAACATTTTTAGTTTCTTACATTCAATATAAAGCAAATTATAAT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf