GT626820

EST Overview


Name	GT626820
Unique Name	GT626820
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	788

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

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BLAST of GT626820 vs. TrEMBL
Match: Q93YF1_TOBAC (Nucleic acid binding protein OS=Nicotiana tabacum GN=nbp1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.632e-36
Identity = 73/83 (87.95%), Postives = 82/83 (98.80%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLAADVTD++LHETFA+ YPSVKAAKVV+DA+TGRSKGYGFVRFGD++ERSQAMT+MNGVYCSSRPMRIGAATPRKSSG+QQ
Sbjct:  215 GDLAADVTDTLLHETFATKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQ 297

[Close]

BLAST of GT626820 vs. TrEMBL
Match: A5BPW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008697 PE=4 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.632e-36
Identity = 74/88 (84.09%), Postives = 82/88 (93.18%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGLPYH 264
            GDLA+DV+DS+LHETFA  YPSVKAAKVV+DA+TGRSKGYGFVRFGDE+ERSQAMT+MNGVYCSSRPMRIGAATPRKSSG+QQ    H
Sbjct:   70 GDLASDVSDSLLHETFAGKYPSVKAAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSH 157

[Close]

BLAST of GT626820 vs. TrEMBL
Match: B9MVK8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1110299 PE=4 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.788e-35
Identity = 73/83 (87.95%), Postives = 80/83 (96.39%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLAADVTDS+L ETF S YPSVKAAKVV+DA+TGRSKGYGFVRFGD+SER+QAMT+MNGVYCSSRPMRIGAATPRKSSG+QQ
Sbjct:  191 GDLAADVTDSLLQETFVSKYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERTQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQ 273

[Close]

BLAST of GT626820 vs. TrEMBL
Match: B9GNX9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_798901 PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.469e-34
Identity = 71/83 (85.54%), Postives = 80/83 (96.39%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLAADVTDS+L ETFAS Y SVK+AKVV+DA+TGRSKGYGFVRFGD++ER+QAMT+MNGVYCSSRPMRIGAATPRKSSG+QQ
Sbjct:  194 GDLAADVTDSLLQETFASKYQSVKSAKVVFDANTGRSKGYGFVRFGDDTERTQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQ 276

[Close]

BLAST of GT626820 vs. TrEMBL
Match: B9R7H3_RICCO (Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_1591740 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 9.329e-34
Identity = 70/82 (85.37%), Postives = 79/82 (96.34%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQ 246
            GDLAADVTDS+LHETF S YPSVKAAKVV+DA+TGRSKGYGFVRFGD++ER+QAMT+MNGVYCSSR MRIGAATPRKS+G+Q
Sbjct:  207 GDLAADVTDSLLHETFVSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTQAMTEMNGVYCSSRAMRIGAATPRKSTGYQ 288

[Close]

BLAST of GT626820 vs. TrEMBL
Match: D7TPM1_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_63.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031780001 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.334e-31
Identity = 64/83 (77.11%), Postives = 77/83 (92.77%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLA+DVTD++L ETFA+ YPSVK AKVV D++TGRSKGYGFVRFGDE+ERS+AM +MNG+YCSSRPMRIG ATP+K+SG+QQ
Sbjct:  107 GDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSRAMNEMNGIYCSSRPMRIGVATPKKASGYQQ 189

[Close]

BLAST of GT626820 vs. TrEMBL
Match: A5BF74_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029928 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.334e-31
Identity = 64/83 (77.11%), Postives = 77/83 (92.77%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLA+DVTD++L ETFA+ YPSVK AKVV D++TGRSKGYGFVRFGDE+ERS+AM +MNG+YCSSRPMRIG ATP+K+SG+QQ
Sbjct:  199 GDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSRAMNEMNGIYCSSRPMRIGVATPKKASGYQQ 281

[Close]

BLAST of GT626820 vs. TrEMBL
Match: Q0VJA3_PLAAC (ACBF-like dna binding protein (Fragment) OS=Platanus acerifolia GN=dbdA PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 9.654e-31
Identity = 63/83 (75.90%), Postives = 77/83 (92.77%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDL++DVTD++L ETFAS YPSVK AKVV DA+TGRSKGYGFVRFGD++ERS+A+++MNG YCS+RPMR+G ATPRKSSG+QQ
Sbjct:  127 GDLSSDVTDTLLQETFASRYPSVKGAKVVIDANTGRSKGYGFVRFGDDNERSRAISEMNGAYCSNRPMRVGVATPRKSSGYQQ 209

[Close]

BLAST of GT626820 vs. TrEMBL
Match: Q9SX80_ARATH (At1g47500 OS=Arabidopsis thaliana GN=At1g47500 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.669e-30
Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLA DV+D++LHETF+  YPSVKAAKVV DA+TGRSKGYGFVRFGDE+ER++AMT+MNGV CSSR MRIG ATPRK++G+QQ
Sbjct:  204 GDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQ 286

[Close]

BLAST of GT626820 vs. TrEMBL
Match: Q9LEB3_NICPL (RNA Binding Protein 47 OS=Nicotiana plumbaginifolia GN=rbp47 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.669e-30
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLA+DVTD++L +TFAS YPS+K AKVV DA+TG SKGYGFVRFGDESERS+AMT+MNGVYCSSR MRIG ATP+K S H+Q
Sbjct:  182 GDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQ 264

[Close]

BLAST of GT626820 vs. SwissProt
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.550e-14
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGH 243
            GDL+ +V +  ++  FAS Y S K+AK++ D  T  S+GYGFVRF DE+++  A+ +M G  C  RP+R+G ATP KS  H
Sbjct:  191 GDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATP-KSKAH 270

[Close]

BLAST of GT626820 vs. SwissProt
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.817e-13
Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPR 228
            GDL     DS L  TF S YPS  +AK++ D  TG S+ YGFVRF  E E+  A+  M G  C  RP+RI  A+P+
Sbjct:  187 GDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262

[Close]

BLAST of GT626820 vs. SwissProt
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.110e-12
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLA +VT+S L E F + Y S   AK+V+D  TG SKGYGFV+F +  E+  A+++M GV+ + R +++G      +SG QQ
Sbjct:  168 GDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG-----PTSGQQQ 245

[Close]

BLAST of GT626820 vs. SwissProt
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.450e-12
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNG-VYCSSRPMRIGAATPRKS 234
            GDL  DV D +L+E F   YPS +  KVV D  TG SKGYGFV+F DE E+ +A+T+  G V   S+P+R+  A P+ S
Sbjct:  101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178

[Close]

BLAST of GT626820 vs. SwissProt
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.450e-12
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNG-VYCSSRPMRIGAATPRKS 234
            GDL  DV D +L+E F   YPS +  KVV D  TG SKGYGFV+F DE E+ +A+T+  G V   S+P+R+  A P+ S
Sbjct:  101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178

[Close]

BLAST of GT626820 vs. SwissProt
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.894e-12
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNG-VYCSSRPMRIGAATPRKS 234
            GDL  DV D +L+E F   YPS +  KVV D  TG SKGYGFV+F DE E+ +A+T+  G +   S+P+R+  A P+ S
Sbjct:  101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKAS 178

[Close]

BLAST of GT626820 vs. SwissProt
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.511e-12
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNG-VYCSSRPMRIGAATPRKS 234
            GDL  DV D +L+E F   YPS +  KVV D  TG SKGYGFV+F DE E+ +A+T+  G V    +P+R+  A P+ S
Sbjct:  101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178

[Close]

BLAST of GT626820 vs. SwissProt
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.198e-12
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNG-VYCSSRPMRIGAATPRKS 234
            GDL  DV D +L+E F   YPS +  KVV D  TG SKGYGFV+F DE E+ +A+T+  G V    +P+R+  A P+ S
Sbjct:  101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178

[Close]

BLAST of GT626820 vs. SwissProt
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.094e-11
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGL 255
            GDL  +V D +L   F S YPS   AKVV D  TG++KGYGFV F D ++  +AM +MNG Y  SRP+++     RKS+   + L
Sbjct:  308 GDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKL-----RKSAWKDRNL 386

[Close]

BLAST of GT626820 vs. SwissProt
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.094e-11
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKS 234
            GDL+   T++ L   F + + SVK  +V+ D  TG S+ +GFVRFGDE ER +A+ +M+G +   R +R+  ATPR +
Sbjct:  197 GDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNN 274

[Close]

BLAST of GT626820 vs. TAIR peptide
Match: AT1G47500.1 (| Symbols: ATRBP47C', RBP47C' | RNA-binding protein 47C' | chr1:17432682-17434805 FORWARD LENGTH=434)

HSP 1 Score: 135.961 bits (341), Expect = 2.367e-32
Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLA DV+D++LHETF+  YPSVKAAKVV DA+TGRSKGYGFVRFGDE+ER++AMT+MNGV CSSR MRIG ATPRK++G+QQ
Sbjct:  204 GDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQ 286

[Close]

BLAST of GT626820 vs. TAIR peptide
Match: AT1G47490.1 (| Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C | chr1:17424801-17427182 FORWARD LENGTH=432)

HSP 1 Score: 134.806 bits (338), Expect = 5.273e-32
Identity = 63/83 (75.90%), Postives = 76/83 (91.57%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDL+ DV+D++LHETF+  YPSVKAAKVV DA+TGRSKGYGFVRFGDE+ER++AMT+MNGV CSSR MRIG ATPRK++G+QQ
Sbjct:  202 GDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQ 284

[Close]

BLAST of GT626820 vs. TAIR peptide
Match: AT1G47490.2 (| Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C | chr1:17424801-17426114 FORWARD LENGTH=310)

HSP 1 Score: 134.806 bits (338), Expect = 5.273e-32
Identity = 63/83 (75.90%), Postives = 76/83 (91.57%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDL+ DV+D++LHETF+  YPSVKAAKVV DA+TGRSKGYGFVRFGDE+ER++AMT+MNGV CSSR MRIG ATPRK++G+QQ
Sbjct:  202 GDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQ 284

[Close]

BLAST of GT626820 vs. TAIR peptide
Match: AT3G19130.1 (| Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B | chr3:6611398-6613823 REVERSE LENGTH=435)

HSP 1 Score: 126.716 bits (317), Expect = 1.436e-29
Identity = 57/83 (68.67%), Postives = 73/83 (87.95%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDL+ DVTD +LHETF+  YPSVK+AKVV D++TGRSKGYGFVRFGDE+ERS+A+T+MNG YCS+R MR+G ATP+++  +QQ
Sbjct:  207 GDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQ 289

[Close]

BLAST of GT626820 vs. TAIR peptide
Match: AT1G49600.1 (| Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A | chr1:18357236-18360150 REVERSE LENGTH=445)

HSP 1 Score: 124.79 bits (312), Expect = 5.456e-29
Identity = 58/83 (69.88%), Postives = 72/83 (86.75%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLA DV+D+VL ETFA  YPSVK AKVV D++TGRSKGYGFVRFGDE+ERS+AMT+MNG +CSSR MR+G ATP++++ + Q
Sbjct:  218 GDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQ 300

[Close]

BLAST of GT626820 vs. TAIR peptide
Match: AT5G19350.2 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=421)

HSP 1 Score: 118.242 bits (295), Expect = 5.107e-27
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLA DVTD +L ETF   Y SV+ AKVV D STGRSKGYGFV+F +ESER++AM +MNG+YCS+RPMRI AATP+K+ G QQ
Sbjct:  121 GDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQ 203

[Close]

BLAST of GT626820 vs. TAIR peptide
Match: AT5G19350.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=425)

HSP 1 Score: 118.242 bits (295), Expect = 5.107e-27
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQ 249
            GDLA DVTD +L ETF   Y SV+ AKVV D STGRSKGYGFV+F +ESER++AM +MNG+YCS+RPMRI AATP+K+ G QQ
Sbjct:  121 GDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQ 203

[Close]

BLAST of GT626820 vs. TAIR peptide
Match: AT1G11650.1 (| Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917301 FORWARD LENGTH=306)

HSP 1 Score: 114.005 bits (284), Expect = 9.631e-26
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRK 231
            GDLAADVTD +L ETF +SYPSVK AKVV D  TGR+KGYGFVRF DESE+ +AMT+MNGV CS+RPMRIG A  +K
Sbjct:  160 GDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236

[Close]

BLAST of GT626820 vs. TAIR peptide
Match: AT1G11650.2 (| Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917941 FORWARD LENGTH=405)

HSP 1 Score: 114.005 bits (284), Expect = 9.631e-26
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRK 231
            GDLAADVTD +L ETF +SYPSVK AKVV D  TGR+KGYGFVRF DESE+ +AMT+MNGV CS+RPMRIG A  +K
Sbjct:  160 GDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236

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BLAST of GT626820 vs. TAIR peptide
Match: AT4G27000.1 (| Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:13554983-13557763 REVERSE LENGTH=415)

HSP 1 Score: 108.997 bits (271), Expect = 3.098e-24
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 1

Query:    1 GDLAADVTDSVLHETFASSYPSVKAAKVVYDASTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRK 231
            GDLA DVTD +L ETF + Y SVK AKVV D +TGRSKGYGFVRF DESE+ +AMT+MNG YCSSRPMR G A  +K
Sbjct:  178 GDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254

The following BLAST results are available for this feature:

BLAST of GT626820 vs. TrEMBL
BLAST of GT626820 vs. SwissProt
BLAST of GT626820 vs. TAIR peptide

BLAST of GT626820 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q93YF1_TOBAC	7.632e-36	87.95	Nucleic acid binding protein OS=Nicotiana tabacum ...	[more]
A5BPW5_VITVI	7.632e-36	84.09	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9MVK8_POPTR	3.788e-35	87.95	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9GNX9_POPTR	5.469e-34	85.54	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9R7H3_RICCO	9.329e-34	85.37	Nuclear acid binding protein, putative OS=Ricinus ...	[more]
D7TPM1_VITVI	4.334e-31	77.11	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5BF74_VITVI	4.334e-31	77.11	Putative uncharacterized protein OS=Vitis vinifera...	[more]
Q0VJA3_PLAAC	9.654e-31	75.90	ACBF-like dna binding protein (Fragment) OS=Platan...	[more]
Q9SX80_ARATH	3.669e-30	77.11	At1g47500 OS=Arabidopsis thaliana GN=At1g47500 PE=...	[more]
Q9LEB3_NICPL	3.669e-30	77.11	RNA Binding Protein 47 OS=Nicotiana plumbaginifoli...	[more]

BLAST of GT626820 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
YG41_SCHPO	1.550e-14	46.91	Uncharacterized RNA-binding protein C23E6.01c OS=S...	[more]
CSX1_SCHPO	3.817e-13	47.37	RNA-binding post-transcriptional regulator csx1 OS...	[more]
NAM8_YEAST	1.110e-12	44.58	Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P...	[more]
TSAP1_PONAB	1.450e-12	49.37	tRNA selenocysteine 1-associated protein 1 OS=Pong...	[more]
TSAP1_HUMAN	1.450e-12	49.37	tRNA selenocysteine 1-associated protein 1 OS=Homo...	[more]
TSAP1_BOVIN	1.894e-12	48.10	tRNA selenocysteine 1-associated protein 1 OS=Bos ...	[more]
TSAP1_RAT	5.511e-12	48.10	tRNA selenocysteine 1-associated protein 1 OS=Ratt...	[more]
TSAP1_MOUSE	7.198e-12	48.10	tRNA selenocysteine 1-associated protein 1 OS=Mus ...	[more]
RBM42_DANRE	2.094e-11	45.88	RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=...	[more]
NGR1_YEAST	2.094e-11	42.31	Negative growth regulatory protein NGR1 OS=Sacchar...	[more]

BLAST of GT626820 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT1G47500.1	2.367e-32	77.11	\| Symbols: ATRBP47C', RBP47C' \| RNA-binding protei...	[more]
AT1G47490.1	5.273e-32	75.90	\| Symbols: ATRBP47C, RBP47C \| RNA-binding protein ...	[more]
AT1G47490.2	5.273e-32	75.90	\| Symbols: ATRBP47C, RBP47C \| RNA-binding protein ...	[more]
AT3G19130.1	1.436e-29	68.67	\| Symbols: ATRBP47B, RBP47B \| RNA-binding protein ...	[more]
AT1G49600.1	5.456e-29	69.88	\| Symbols: ATRBP47A, RBP47A \| RNA-binding protein ...	[more]
AT5G19350.2	5.107e-27	68.67	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT5G19350.1	5.107e-27	68.67	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT1G11650.1	9.631e-26	72.73	\| Symbols: ATRBP45B, RBP45B \| RNA-binding (RRM/RBD...	[more]
AT1G11650.2	9.631e-26	72.73	\| Symbols: ATRBP45B, RBP45B \| RNA-binding (RRM/RBD...	[more]
AT4G27000.1	3.098e-24	70.13	\| Symbols: ATRBP45C \| RNA-binding (RRM/RBD/RNP mot...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 1..68 score: 7.6
IPR000504	RNA recognition motif domain	SMART	SM00360	no description	coord: 1..71 score: 1.5
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 1..75 score: 15
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 1..82 score: 3.8
None	No IPR available	PANTHER	PTHR10432	RNA-BINDING PROTEIN	coord: 1..77 score: 1.4
None	No IPR available	PANTHER	PTHR10432:SF67	NUCLEAR ACID BINDING PROTEIN	coord: 1..77 score: 1.4
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 1..84 score: 3.4
None	No IPR available	SEG	seg	seg	coord: 11..25 score

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT626820 ID=GT626820; Name=GT626820; organism=Lens culinaris; type=EST; length=788bp
GGAGATTTAGCTGCTGATGTTACAGATAGTGTGTTGCATGAAACTTTTGC
TAGTTCATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTATGATGCCAGTA
CTGGCCGTTCAAAGGGCTATGGATTTGTCAGGTTTGGAGATGAAAGTGAG
AGATCTCAGGCTATGACTCAAATGAATGGTGTTTACTGTTCTAGCAGGCC
CATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAAG
GTTTGCCATATCACATTACTTGTTTCTGATATATGAAATTTTGTTCTTTT
CATTTGGGAAAGAAAAAGAACAGTGCATTATTGCATTATACCTTCCATCC
GAAGTTGTTTCTAGCCACCTATTTTACCTCATTGGTTTGTTCTGCTGCAG
GTTTTACAGAAGAACTATGATCTGAACTACATTTCTTGCTTGTATTAACA
GTAATTATAGACATATGGTTTAGCTTTTGATTTCATTTTAGAAGGGATGT
TGTCATGTCTTTCTAAATGAAGATAATTTTTGAAATGACAATTATCATGT
CTTTTTCACATGAAAAAAATTATGTCATGTCATTTACTGAATGCAAATGA
ACTTTGAATATGTTTCCTAGTTTCACTAAATAGGAGTAAAGATAGTTGAA
AAACCTTCTAGTTTATTAATTGCTAATGAGTATGTAACGCATGCTCAAGT
GTCCATTTGGTCCATTGGTGCGCTGCGTGATGTTTTTTTGGGTAGCTGAT
TAGGCAAGTAGCTATCTCATGGAAATTCTTGAATTGAC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

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