GT627030
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT627030 vs. TrEMBL
Match: D7SL10_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025216001 PE=4 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 4.505e-12 Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1 Query: 118 KMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLHGN 324 K+ I S+F K+ +FRLYS TVEEK L LAK M LDSN+Q IS+ST+H LL G+SYL N L+ HG+ Sbjct: 1096 KITIDSQFEKIKLFRLYSPFTVEEKSLILAKHDMALDSNLQNISRSTSHMLLMWGASYLFNKLEKFHGS 1164
BLAST of GT627030 vs. TrEMBL
Match: B9STU6_RICCO (Mom(Plant), putative OS=Ricinus communis GN=RCOM_0543920 PE=4 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 3.229e-10 Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLHGNG-TNLPQDPNYDNA 363 +K+ + S+F +L VFRLYS TVEE VL LAK +LDSNVQ IS++T SLL G+SYL LD+ + N + ++D + Sbjct: 612 RKITLDSQFEQLKVFRLYSSFTVEENVLILAKHDKILDSNVQSISRATTQSLLMRGASYLFRKLDEFQNSSILNTNRSSSFDES 695
BLAST of GT627030 vs. TrEMBL
Match: B9F1S4_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_05065 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.733e-9 Identity = 31/67 (46.27%), Postives = 52/67 (77.61%), Query Frame = 1 Query: 115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDL 315 QK+ I S+F ++++FRLY+ TVEEK L LA++G+V+D+N+Q + S HSLL+ G+++L + LD++ Sbjct: 941 QKIKIESQFERVSIFRLYTPFTVEEKSLVLARQGIVIDNNIQDLRTSLKHSLLRWGAAFLFSRLDEV 1007
BLAST of GT627030 vs. TrEMBL
Match: B8AGJ8_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05543 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.733e-9 Identity = 31/67 (46.27%), Postives = 52/67 (77.61%), Query Frame = 1 Query: 115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDL 315 QK+ I S+F ++++FRLY+ TVEEK L LA++G+V+D+N+Q + S HSLL+ G+++L + LD++ Sbjct: 958 QKIKIESQFERVSIFRLYTPFTVEEKSLVLARQGIVIDNNIQDLRTSLKHSLLRWGAAFLFSRLDEV 1024
BLAST of GT627030 vs. TrEMBL
Match: C5Z223_SORBI (Putative uncharacterized protein Sb10g000300 OS=Sorghum bicolor GN=Sb10g000300 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.357e-8 Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1 Query: 115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLHGNGTNLPQDPNYDN 360 QK+ + S+ + +FRLYS TVEEK L LAK +LDSN+ I+ S +H LL G+S+L N L++L Q+P+Y N Sbjct: 152 QKVSMESQSEPVPIFRLYSSCTVEEKALILAKHDHILDSNILNITPSLSHCLLSWGASFLFNRLEEL--------QNPSYSN 225
BLAST of GT627030 vs. TrEMBL
Match: B9I6P2_POPTR (Chromatin remodeling complex subunit OS=Populus trichocarpa GN=CHR945-1 PE=4 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 8.793e-8 Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLH-GNGT 330 QK+ + S+F+++ +FRLYS TVEEKVL +A++ L+S++ IS++ + LL G+SYL L + H GN T Sbjct: 999 QKITLHSQFDQINIFRLYSSCTVEEKVLIIARQDKTLESSLHSISRAASDMLLMWGASYLFEKLSEFHCGNDT 1071
BLAST of GT627030 vs. TrEMBL
Match: B9FR21_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_19808 PE=4 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 1.500e-7 Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1 Query: 115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDD 312 Q++ I S+ + +FRLYS TVEEK L LAK +LDSNVQ + +HSLL G+S+L N L++ Sbjct: 726 QRISIESQSECVPIFRLYSSCTVEEKTLILAKHDHILDSNVQNVMPIVSHSLLSWGASFLFNRLEE 791
BLAST of GT627030 vs. TrEMBL
Match: B8B194_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21272 PE=4 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 1.500e-7 Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1 Query: 115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDD 312 Q++ I S+ + +FRLYS TVEEK L LAK +LDSNVQ + +HSLL G+S+L N L++ Sbjct: 820 QRISIESQSECVPIFRLYSSCTVEEKTLILAKHDHILDSNVQNVMPIVSHSLLSWGASFLFNRLEE 885
BLAST of GT627030 vs. TrEMBL
Match: C5XS67_SORBI (Putative uncharacterized protein Sb04g000870 OS=Sorghum bicolor GN=Sb04g000870 PE=4 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 1.959e-7 Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 1 Query: 115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDL-HGN 324 +K+ I S+ + +FRLY+ TVEEK L LAK+ M++DSN Q I+ S +H L+ G S+L N +D+L H N Sbjct: 586 RKLKIGSQLKYVRIFRLYTPFTVEEKSLVLAKQSMIIDSNGQGITSSLSHCLVSWGVSFLFNRVDELQHDN 656
BLAST of GT627030 vs. TrEMBL
Match: B9MZ67_POPTR (Chromatin remodeling complex subunit OS=Populus trichocarpa GN=CHR952 PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 4.364e-7 Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 1 Query: 115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLH 318 QK+ + S+ ++ +FRLYS TVEEKVL +A++ LD N+Q I+Q +H LL G SYL + L + + Sbjct: 632 QKITLYSESEQINIFRLYSSCTVEEKVLIVARQDKTLDRNLQRINQGASHMLLMWGVSYLFDKLSEFN 699
BLAST of GT627030 vs. TAIR peptide
Match: AT1G08060.2 (| Symbols: MOM, MOM1 | ATP-dependent helicase family protein | chr1:2501981-2510488 REVERSE LENGTH=2001) HSP 1 Score: 54.299 bits (129), Expect = 9.057e-8 Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLHGNGT 330 +K+ I S + +FRLYS TVEEK L LA++ + V+ +++S H+LL G+SYL + LD H + T Sbjct: 671 EKIKIESCSERTKIFRLYSVCTVEEKALILARQNKRQNKAVENLNRSLTHALLMWGASYLFDKLDHFHSSET 742
BLAST of GT627030 vs. TAIR peptide
Match: AT1G08060.1 (| Symbols: MOM, MOM1 | ATP-dependent helicase family protein | chr1:2501981-2510488 REVERSE LENGTH=2001) HSP 1 Score: 54.299 bits (129), Expect = 9.057e-8 Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLHGNGT 330 +K+ I S + +FRLYS TVEEK L LA++ + V+ +++S H+LL G+SYL + LD H + T Sbjct: 671 EKIKIESCSERTKIFRLYSVCTVEEKALILARQNKRQNKAVENLNRSLTHALLMWGASYLFDKLDHFHSSET 742 The following BLAST results are available for this feature:
BLAST of GT627030 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 10
BLAST of GT627030 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT627030 ID=GT627030; Name=GT627030; organism=Lens culinaris; type=EST; length=787bpback to top |