GT627030

EST Overview
NameGT627030
Unique NameGT627030
TypeEST
OrganismLens culinaris (lentil)
Sequence length787
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT627030 vs. TrEMBL
Match: D7SL10_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025216001 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.505e-12
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  118 KMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLHGN 324
            K+ I S+F K+ +FRLYS  TVEEK L LAK  M LDSN+Q IS+ST+H LL  G+SYL N L+  HG+
Sbjct: 1096 KITIDSQFEKIKLFRLYSPFTVEEKSLILAKHDMALDSNLQNISRSTSHMLLMWGASYLFNKLEKFHGS 1164          
BLAST of GT627030 vs. TrEMBL
Match: B9STU6_RICCO (Mom(Plant), putative OS=Ricinus communis GN=RCOM_0543920 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.229e-10
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLHGNG-TNLPQDPNYDNA 363
            +K+ + S+F +L VFRLYS  TVEE VL LAK   +LDSNVQ IS++T  SLL  G+SYL   LD+   +   N  +  ++D +
Sbjct:  612 RKITLDSQFEQLKVFRLYSSFTVEENVLILAKHDKILDSNVQSISRATTQSLLMRGASYLFRKLDEFQNSSILNTNRSSSFDES 695          
BLAST of GT627030 vs. TrEMBL
Match: B9F1S4_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_05065 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.733e-9
Identity = 31/67 (46.27%), Postives = 52/67 (77.61%), Query Frame = 1
Query:  115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDL 315
            QK+ I S+F ++++FRLY+  TVEEK L LA++G+V+D+N+Q +  S  HSLL+ G+++L + LD++
Sbjct:  941 QKIKIESQFERVSIFRLYTPFTVEEKSLVLARQGIVIDNNIQDLRTSLKHSLLRWGAAFLFSRLDEV 1007          
BLAST of GT627030 vs. TrEMBL
Match: B8AGJ8_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05543 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.733e-9
Identity = 31/67 (46.27%), Postives = 52/67 (77.61%), Query Frame = 1
Query:  115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDL 315
            QK+ I S+F ++++FRLY+  TVEEK L LA++G+V+D+N+Q +  S  HSLL+ G+++L + LD++
Sbjct:  958 QKIKIESQFERVSIFRLYTPFTVEEKSLVLARQGIVIDNNIQDLRTSLKHSLLRWGAAFLFSRLDEV 1024          
BLAST of GT627030 vs. TrEMBL
Match: C5Z223_SORBI (Putative uncharacterized protein Sb10g000300 OS=Sorghum bicolor GN=Sb10g000300 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.357e-8
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLHGNGTNLPQDPNYDN 360
            QK+ + S+   + +FRLYS  TVEEK L LAK   +LDSN+  I+ S +H LL  G+S+L N L++L        Q+P+Y N
Sbjct:  152 QKVSMESQSEPVPIFRLYSSCTVEEKALILAKHDHILDSNILNITPSLSHCLLSWGASFLFNRLEEL--------QNPSYSN 225          
BLAST of GT627030 vs. TrEMBL
Match: B9I6P2_POPTR (Chromatin remodeling complex subunit OS=Populus trichocarpa GN=CHR945-1 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 8.793e-8
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLH-GNGT 330
            QK+ + S+F+++ +FRLYS  TVEEKVL +A++   L+S++  IS++ +  LL  G+SYL   L + H GN T
Sbjct:  999 QKITLHSQFDQINIFRLYSSCTVEEKVLIIARQDKTLESSLHSISRAASDMLLMWGASYLFEKLSEFHCGNDT 1071          
BLAST of GT627030 vs. TrEMBL
Match: B9FR21_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_19808 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.500e-7
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDD 312
            Q++ I S+   + +FRLYS  TVEEK L LAK   +LDSNVQ +    +HSLL  G+S+L N L++
Sbjct:  726 QRISIESQSECVPIFRLYSSCTVEEKTLILAKHDHILDSNVQNVMPIVSHSLLSWGASFLFNRLEE 791          
BLAST of GT627030 vs. TrEMBL
Match: B8B194_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21272 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.500e-7
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDD 312
            Q++ I S+   + +FRLYS  TVEEK L LAK   +LDSNVQ +    +HSLL  G+S+L N L++
Sbjct:  820 QRISIESQSECVPIFRLYSSCTVEEKTLILAKHDHILDSNVQNVMPIVSHSLLSWGASFLFNRLEE 885          
BLAST of GT627030 vs. TrEMBL
Match: C5XS67_SORBI (Putative uncharacterized protein Sb04g000870 OS=Sorghum bicolor GN=Sb04g000870 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.959e-7
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 1
Query:  115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDL-HGN 324
            +K+ I S+   + +FRLY+  TVEEK L LAK+ M++DSN Q I+ S +H L+  G S+L N +D+L H N
Sbjct:  586 RKLKIGSQLKYVRIFRLYTPFTVEEKSLVLAKQSMIIDSNGQGITSSLSHCLVSWGVSFLFNRVDELQHDN 656          
BLAST of GT627030 vs. TrEMBL
Match: B9MZ67_POPTR (Chromatin remodeling complex subunit OS=Populus trichocarpa GN=CHR952 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.364e-7
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLH 318
            QK+ + S+  ++ +FRLYS  TVEEKVL +A++   LD N+Q I+Q  +H LL  G SYL + L + +
Sbjct:  632 QKITLYSESEQINIFRLYSSCTVEEKVLIVARQDKTLDRNLQRINQGASHMLLMWGVSYLFDKLSEFN 699          
BLAST of GT627030 vs. TAIR peptide
Match: AT1G08060.2 (| Symbols: MOM, MOM1 | ATP-dependent helicase family protein | chr1:2501981-2510488 REVERSE LENGTH=2001)

HSP 1 Score: 54.299 bits (129), Expect = 9.057e-8
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLHGNGT 330
            +K+ I S   +  +FRLYS  TVEEK L LA++    +  V+ +++S  H+LL  G+SYL + LD  H + T
Sbjct:  671 EKIKIESCSERTKIFRLYSVCTVEEKALILARQNKRQNKAVENLNRSLTHALLMWGASYLFDKLDHFHSSET 742          
BLAST of GT627030 vs. TAIR peptide
Match: AT1G08060.1 (| Symbols: MOM, MOM1 | ATP-dependent helicase family protein | chr1:2501981-2510488 REVERSE LENGTH=2001)

HSP 1 Score: 54.299 bits (129), Expect = 9.057e-8
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  115 QKMFISSKFNKLTVFRLYSYTTVEEKVLRLAKEGMVLDSNVQLISQSTNHSLLK*GSSYLSNNLDDLHGNGT 330
            +K+ I S   +  +FRLYS  TVEEK L LA++    +  V+ +++S  H+LL  G+SYL + LD  H + T
Sbjct:  671 EKIKIESCSERTKIFRLYSVCTVEEKALILARQNKRQNKAVENLNRSLTHALLMWGASYLFDKLDHFHSSET 742          
The following BLAST results are available for this feature:
BLAST of GT627030 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7SL10_VITVI4.505e-1257.97Whole genome shotgun sequence of line PN40024, sca... [more]
B9STU6_RICCO3.229e-1046.43Mom(Plant), putative OS=Ricinus communis GN=RCOM_0... [more]
B9F1S4_ORYSJ2.733e-946.27Putative uncharacterized protein OS=Oryza sativa s... [more]
B8AGJ8_ORYSI2.733e-946.27Putative uncharacterized protein OS=Oryza sativa s... [more]
C5Z223_SORBI1.357e-843.90Putative uncharacterized protein Sb10g000300 OS=So... [more]
B9I6P2_POPTR8.793e-843.84Chromatin remodeling complex subunit OS=Populus tr... [more]
B9FR21_ORYSJ1.500e-748.48Putative uncharacterized protein OS=Oryza sativa s... [more]
B8B194_ORYSI1.500e-748.48Putative uncharacterized protein OS=Oryza sativa s... [more]
C5XS67_SORBI1.959e-746.48Putative uncharacterized protein Sb04g000870 OS=So... [more]
B9MZ67_POPTR4.364e-744.12Chromatin remodeling complex subunit OS=Populus tr... [more]
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BLAST of GT627030 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G08060.29.057e-840.28| Symbols: MOM, MOM1 | ATP-dependent helicase fami... [more]
AT1G08060.19.057e-840.28| Symbols: MOM, MOM1 | ATP-dependent helicase fami... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 86..119
score
NoneNo IPR availableSEGsegsegcoord: 3..21
score
NoneNo IPR availableSEGsegsegcoord: 3..23
score
NoneNo IPR availableSEGsegsegcoord: 53..65
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT627030 ID=GT627030; Name=GT627030; organism=Lens culinaris; type=EST; length=787bp
AACCATAAATTTGTTTATATTTTCTATGTGAATCAAGTGAACAAAAATGT
CTATATCAAGGGAAATTATTAGGCCTTCGAAAATACATCTAGAAGACCAC
CCATATTCAAATAACAAAAAATGTTCATCAGCTCAAAGTTCAATAAGTTA
ACAGTTTTCAGATTGTACTCATACACCACTGTTGAAGAGAAAGTTTTAAG
GCTTGCAAAAGAGGGTATGGTTCTTGACAGCAACGTGCAGTTGATTAGCC
AGAGTACTAATCACAGCCTGCTGAAATGAGGTTCCTCTTATCTCTCCAAT
AATCTTGATGACTTGCATGGAAACGGCACCAACCTTCCTCAAGATCCTAA
TTATGATAATGCTTGTTGAATAAACCTACCAGGAGAAGAAATCCAAAACT
CCTAGAATCGTCATTCTGTTAGATACTCACCATATCCACCAAAGGGAGTA
CCGGCATCAGGAGCACAGTTTCGTCGAGGCATCGTGAAAAAGGGAACACG
GACATCACTAGGAATTCAGATTTATACGAGCAGGTACTGTACCTCGCCAG
AATCGCTACCGACACGTTCGTCATCAAAAGCAGAGTTCCGGTATCTCCTT
TATTCCTTTCCCTGTTTCGATATCAGCCTCTTGATAAATTCCTTTGTTCA
TATAATCCCGAGGGGTTCGCTTCAACCCATTTTCGGTTTGGGGATGGTGG
CCGTCGCGGCCATTGTTGCGACAGAGAGAGGGTAGAGCGGCGGCGAGTGA
GGTCGCGAGAGAGAGAGAGAGAGAGAGAGCTCGCGAA
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