EX569441

EST Overview
NameEX569441
Unique NameEX569441
TypeEST
OrganismPisum sativum (pea)
Sequence length234
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
BLAST of EX569441 vs. TrEMBL
Match: C6T593_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 8.691e-28
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNEAEKCLIETSINSLRISL
Sbjct:   15 TLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISL 74          

HSP 2 Score: 28.8758 bits (63), Expect = 8.691e-28
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   22 TLRLYLTCIRNT 57
            TLRLYLTCIRNT
Sbjct:    4 TLRLYLTCIRNT 15          
BLAST of EX569441 vs. TrEMBL
Match: C5WSX3_SORBI (Putative uncharacterized protein Sb01g001300 OS=Sorghum bicolor GN=Sb01g001300 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.918e-27
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNEAEKCLIETSINS+RIS+
Sbjct:   17 TLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSIRISM 76          

HSP 2 Score: 29.261 bits (64), Expect = 1.918e-27
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1
Query:    7 LMATTTLRLYLTCIRNT 57
            +    TLRLYLTCIRNT
Sbjct:    1 MSTANTLRLYLTCIRNT 17          
BLAST of EX569441 vs. TrEMBL
Match: B6UFY0_MAIZE (Actin-related protein 2/3 complex subunit 4 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.496e-27
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNEAEKCLIETSINS+RIS+
Sbjct:   19 TLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSIRISM 78          

HSP 2 Score: 28.8758 bits (63), Expect = 2.496e-27
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   22 TLRLYLTCIRNT 57
            TLRLYLTCIRNT
Sbjct:    8 TLRLYLTCIRNT 19          
BLAST of EX569441 vs. TrEMBL
Match: Q852C5_ORYSJ (Actin-related protein 2/3 complex subunit 4, putative, expressed OS=Oryza sativa subsp. japonica GN=OSJNBb0096M04.125 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.497e-27
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNEAEKCLIETSINS+RIS+
Sbjct:   15 TLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSIRISM 74          

HSP 2 Score: 28.8758 bits (63), Expect = 2.497e-27
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   22 TLRLYLTCIRNT 57
            TLRLYLTCIRNT
Sbjct:    4 TLRLYLTCIRNT 15          
BLAST of EX569441 vs. TrEMBL
Match: A2XP21_ORYSI (Actin-related protein 2/3 complex subunit 4 OS=Oryza sativa subsp. indica GN=OsI_14322 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.497e-27
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNEAEKCLIETSINS+RIS+
Sbjct:   15 TLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSIRISM 74          

HSP 2 Score: 28.8758 bits (63), Expect = 2.497e-27
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   22 TLRLYLTCIRNT 57
            TLRLYLTCIRNT
Sbjct:    4 TLRLYLTCIRNT 15          
BLAST of EX569441 vs. TrEMBL
Match: Q84SP9_ORYSJ (Putative ARP2/3 complex 20 kDa subunit, 3'-partial (Fragment) OS=Oryza sativa subsp. japonica GN=OSJNBb0043P23.1 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.498e-27
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNEAEKCLIETSINS+RIS+
Sbjct:   15 TLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSIRISM 74          

HSP 2 Score: 28.8758 bits (63), Expect = 2.498e-27
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:   22 TLRLYLTCIRNT 57
            TLRLYLTCIRNT
Sbjct:    4 TLRLYLTCIRNT 15          
BLAST of EX569441 vs. TrEMBL
Match: B9RWE0_RICCO (Arp2/3 complex 20 kD subunit, putative OS=Ricinus communis GN=RCOM_1018440 PE=4 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.233e-27
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS ELLLNP+LICRNEAEKCLIETSINSLRISL
Sbjct:   15 TLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISL 74          

HSP 2 Score: 26.9498 bits (58), Expect = 4.233e-27
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:   25 LRLYLTCIRNT 57
            LRLYLTCIRNT
Sbjct:    5 LRLYLTCIRNT 15          
BLAST of EX569441 vs. TrEMBL
Match: D7MH64_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_330101 PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.060e-26
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNEAEKCLIETSINSLRISL
Sbjct:   15 TLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISL 74          

HSP 2 Score: 24.2534 bits (51), Expect = 2.060e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   22 TLRLYLTCIRNT 57
            +LRLYL CI+NT
Sbjct:    4 SLRLYLACIKNT 15          
BLAST of EX569441 vs. TrEMBL
Match: Q2V3I8_ARATH (Putative uncharacterized protein At4g14147.1 OS=Arabidopsis thaliana GN=At4g14147 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.061e-26
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNEAEKCLIETSINSLRISL
Sbjct:   15 TLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISL 74          

HSP 2 Score: 24.2534 bits (51), Expect = 2.061e-26
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   22 TLRLYLTCIRNT 57
            +LRLYL CI+NT
Sbjct:    4 SLRLYLACIKNT 15          
BLAST of EX569441 vs. TrEMBL
Match: D7SNI9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_29.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00020914001 PE=4 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.676e-26
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS E+LLNPVLICRNEAEKCLIETSINSLRISL
Sbjct:   40 TLEAAMCLQNFPCQEVERHNKPEVELKTSPEVLLNPVLICRNEAEKCLIETSINSLRISL 99          

HSP 2 Score: 25.0238 bits (53), Expect = 2.676e-26
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:   22 TLRLYLTCIRNT 57
            T RLY TCIRNT
Sbjct:   29 TSRLYFTCIRNT 40          
BLAST of EX569441 vs. SwissProt
Match: ARPC4_DICDI (Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum GN=arcD PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.458e-18
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL A+MCLQNF  Q VERHNKPEVE+KTS EL+LNPV+I RN+ E+ LIETSINS+RIS+
Sbjct:   15 TLTASMCLQNFGSQIVERHNKPEVEVKTSKELVLNPVIIARNKNERVLIETSINSIRISV 74          
BLAST of EX569441 vs. SwissProt
Match: ARPC4_MOUSE (Actin-related protein 2/3 complex subunit 4 OS=Mus musculus GN=Arpc4 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.140e-17
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 2
Query:   50 ATLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            ATL AA+CL+NF  Q VERHNKPEVE+++S ELLL PV I RNE EK LIE SINS+R+S+
Sbjct:   14 ATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSI 74          
BLAST of EX569441 vs. SwissProt
Match: ARPC4_HUMAN (Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.140e-17
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 2
Query:   50 ATLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            ATL AA+CL+NF  Q VERHNKPEVE+++S ELLL PV I RNE EK LIE SINS+R+S+
Sbjct:   14 ATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSI 74          
BLAST of EX569441 vs. SwissProt
Match: ARPC4_BOVIN (Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.140e-17
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 2
Query:   50 ATLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            ATL AA+CL+NF  Q VERHNKPEVE+++S ELLL PV I RNE EK LIE SINS+R+S+
Sbjct:   14 ATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSI 74          
BLAST of EX569441 vs. SwissProt
Match: ARPC4_CAEEL (Probable actin-related protein 2/3 complex subunit 4 OS=Caenorhabditis elegans GN=arx-6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.297e-15
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AA+CL+ F  Q VERHNKPEVE++TS ELL+ PV++ RN+ E+ LIE S+NS+RIS+
Sbjct:   15 TLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQERVLIEPSVNSVRISI 74          
BLAST of EX569441 vs. SwissProt
Match: ARPC4_YEAST (Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces cerevisiae GN=ARC19 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.169e-13
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVEL-KTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            +L AA+ L NF  QEVERHN+PEVE+  TS+ELLL P+ I RNE E+ LIE S+NS+R+SL
Sbjct:   15 SLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENEQVLIEPSVNSVRMSL 75          
BLAST of EX569441 vs. SwissProt
Match: ARPC4_SCHPO (Actin-related protein 2/3 complex subunit 4 OS=Schizosaccharomyces pombe GN=arc4 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.483e-11
Identity = 30/61 (49.18%), Postives = 47/61 (77.05%), Query Frame = 2
Query:   50 ATLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            +TL A++ L+ F  + VER ++PEVE+  S E+LL P+++ RNE E+CLIE+S+NS+R S+
Sbjct:   14 STLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSI 74          
BLAST of EX569441 vs. TAIR peptide
Match: AT4G14147.2 (| Symbols: ARPC4 | protein binding | chr4:8154062-8156246 REVERSE LENGTH=176)

HSP 1 Score: 118.627 bits (296), Expect = 7.954e-29
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNEAEKCLIETSINSLRISL
Sbjct:   15 TLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISL 74          

HSP 2 Score: 24.2534 bits (51), Expect = 7.954e-29
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   22 TLRLYLTCIRNT 57
            +LRLYL CI+NT
Sbjct:    4 SLRLYLACIKNT 15          
BLAST of EX569441 vs. TAIR peptide
Match: AT4G14147.1 (| Symbols: ARPC4 | protein binding | chr4:8154079-8156246 REVERSE LENGTH=169)

HSP 1 Score: 118.627 bits (296), Expect = 7.959e-29
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   53 TLHAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLICRNEAEKCLIETSINSLRISL 232
            TL AAMCLQNFPCQEVERHNKPEVELKTS ELLLNPVLICRNEAEKCLIETSINSLRISL
Sbjct:   15 TLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISL 74          

HSP 2 Score: 24.2534 bits (51), Expect = 7.959e-29
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   22 TLRLYLTCIRNT 57
            +LRLYL CI+NT
Sbjct:    4 SLRLYLACIKNT 15          
The following BLAST results are available for this feature:
BLAST of EX569441 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6T593_SOYBN8.691e-2896.67Putative uncharacterized protein OS=Glycine max PE... [more]
C5WSX3_SORBI1.918e-2793.33Putative uncharacterized protein Sb01g001300 OS=So... [more]
B6UFY0_MAIZE2.496e-2793.33Actin-related protein 2/3 complex subunit 4 OS=Zea... [more]
Q852C5_ORYSJ2.497e-2793.33Actin-related protein 2/3 complex subunit 4, putat... [more]
A2XP21_ORYSI2.497e-2793.33Actin-related protein 2/3 complex subunit 4 OS=Ory... [more]
Q84SP9_ORYSJ2.498e-2793.33Putative ARP2/3 complex 20 kDa subunit, 3'-partial... [more]
B9RWE0_RICCO4.233e-2795.00Arp2/3 complex 20 kD subunit, putative OS=Ricinus ... [more]
D7MH64_ARALY2.060e-2696.67Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q2V3I8_ARATH2.061e-2696.67Putative uncharacterized protein At4g14147.1 OS=Ar... [more]
D7SNI9_VITVI2.676e-2695.00Whole genome shotgun sequence of line PN40024, sca... [more]
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BLAST of EX569441 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
ARPC4_DICDI6.458e-1873.33Actin-related protein 2/3 complex subunit 4 OS=Dic... [more]
ARPC4_MOUSE7.140e-1768.85Actin-related protein 2/3 complex subunit 4 OS=Mus... [more]
ARPC4_HUMAN7.140e-1768.85Actin-related protein 2/3 complex subunit 4 OS=Hom... [more]
ARPC4_BOVIN7.140e-1768.85Actin-related protein 2/3 complex subunit 4 OS=Bos... [more]
ARPC4_CAEEL2.297e-1561.67Probable actin-related protein 2/3 complex subunit... [more]
ARPC4_YEAST8.169e-1362.30Actin-related protein 2/3 complex subunit 4 OS=Sac... [more]
ARPC4_SCHPO4.483e-1149.18Actin-related protein 2/3 complex subunit 4 OS=Sch... [more]
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BLAST of EX569441 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G14147.27.954e-2996.67| Symbols: ARPC4 | protein binding | chr4:8154062-... [more]
AT4G14147.17.959e-2996.67| Symbols: ARPC4 | protein binding | chr4:8154079-... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008384ARP23 complex 20kDa subunitPANTHERPTHR22629ARP2/3 COMPLEX 20 KD SUBUNITcoord: 4..64
score: 1.9
IPR008384ARP23 complex 20kDa subunitPFAMPF05856ARPC4coord: 4..64
score: 9.4
NoneNo IPR availableGENE3D3.30.1460.20no descriptioncoord: 4..64
score: 3
NoneNo IPR availableSUPERFAMILY69645Arp2/3 complex subunitscoord: 3..64
score: 4.3

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX569441 ID=EX569441; Name=EX569441; organism=Pisum sativum; type=EST; length=234bp
CGCAAACTCATGGCTACTACCACCTTACGCTTATACCTAACCTGCATTCG
CAACACTCCATGCCGCAATGTGCCTTCAGAATTTTCCTTGTCAAGAAGTT
GAAAGACATAACAAACCAGAGGTTGAACTCAAGACTAGCTCTGAACTCCT
TCTCAATCCTGTTTTGATATGCCGTAATGAGGCTGAGAAATGCTTAATAG
AAACGTCTATCAATTCACTAAGGATAAGTCTTAA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Vocabulary: Biological Process
TermDefinition
GO:0030041actin filament polymerization
Vocabulary: INTERPRO
TermDefinition
IPR008384ARPC4