FG535207

EST Overview
NameFG535207
Unique NameFG535207
TypeEST
OrganismPisum sativum (pea)
Sequence length411
Libraries
Library NameType
LIBEST_023215 MeriZ Pisum sativum Shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
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BLAST of FG535207 vs. TrEMBL
Match: D7TTG5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_12.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00013232001 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.814e-8
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 3 
Query:    3 PKLVKGESKVVWEWQVEGSLSASKLLTKRDVSKTKVNGNIDL-SCQPRPTMKAELM 167
            PKLVKGESKVVWEWQVEGSLS S+L  KR+ SK K +G  ++ S    P MKA  M
Sbjct:  326 PKLVKGESKVVWEWQVEGSLS-SRLRKKREASKLKPSGGTNINSGVQSPAMKASEM 380
[Close]
BLAST of FG535207 vs. TrEMBL
Match: B9MTY2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_589966 PE=4 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 9.394e-7
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 3 
Query:    3 PKLVKGESKVVWEWQVEGSLSASKLLTKRDVSKTKVNGNI 122
            PKLVKGESKVVWEWQVEGSLS+ ++  K + SK K N  +
Sbjct:  325 PKLVKGESKVVWEWQVEGSLSSGRMRKKVESSKLKSNDGV 364
[Close]
BLAST of FG535207 vs. TAIR peptide
Match: AT5G46560.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:18888061-18890090 FORWARD LENGTH=387)

HSP 1 Score: 53.9138 bits (128), Expect = 3.403e-8
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 3 
Query:    6 KLVKGESKVVWEWQVEGSLSASKLLTKRDVSKTKVNGNIDLS 131
            KL+KGE KVVWEWQVEGSLS SKL  +R+  K KV  +ID S
Sbjct:  331 KLLKGEKKVVWEWQVEGSLSLSKLKKQRETQK-KVRKSIDSS 371
The following BLAST results are available for this feature:
BLAST of FG535207 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
D7TTG5_VITVI3.814e-862.50Whole genome shotgun sequence of line PN40024, sca... [more]
B9MTY2_POPTR9.394e-765.00Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of FG535207 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G46560.13.403e-866.67| Symbols: | CONTAINS InterPro DOMAIN/s: Inner nu... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 10..19
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>FG535207 ID=FG535207; Name=FG535207; organism=Pisum sativum; type=EST; length=411bp
ATCCCAAGTTGGTGAAGGGTGAATCTAAAGTGGTATGGGAATGGCAAGTT
GAAGGTTCTCTTAGCGCATCAAAGTTGTTGACTAAAAGAGATGTAAGCAA
AACTAAGGTCAATGGAAACATAGACCTGAGTTGTCAACCACGACCTACAA
TGAAAGCAGAGCTCATGGAACCACATTTTTGATACAAAATTTTCTTTGAG
TAGTGATCCGTGTAAATCAAGATGGCGGCTGAAGCTTAGTCTAATGATGT
TTGTGTATAAAATGTTGGGTGAGAACGTAGGATATATATTGTATACCTTC
GCAGCTGCACGGAGCAATCGTGTGAGTGTGTCCTGCGTTTGTAAAAAAAT
GTAGATTCATAAGGCCTGCATTCTTAAAAATTTTAAATATGCTTATATTA
TGTTTTAGGGA
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