FG529124

EST Overview
NameFG529124
Unique NameFG529124
TypeEST
OrganismPisum sativum (pea)
Sequence length640
Libraries
Library NameType
LIBEST_023217 MeriP Pisum sativum Shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of FG529124 vs. TrEMBL
Match: B9HYC3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_884732 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 6.760e-9
Identity = 34/73 (46.58%), Postives = 39/73 (53.42%), Query Frame = 2
Query:  194 PAVEVSKTISLSRNPSLTS--------QCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            P V  S+   L R P+  S        Q C ICL N KD+AFGCGHMTCR+CGS            T+RIRLF
Sbjct:  323 PPVPYSRRPVLDREPTHVSSPVLDERTQACPICLTNRKDLAFGCGHMTCRDCGSRVSSCPICRRPITSRIRLF 395          
BLAST of FG529124 vs. TrEMBL
Match: D7T109_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_85.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036707001 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 5.723e-8
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 2
Query:  185 SKVPAVEVSKTISLSRNPSLTSQCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLFPG 394
            S++P+   S+ +S +R+    +Q C ICL + KDMAFGCGHMTCREC S             NR+R++ G
Sbjct: 5598 SRMPSRMPSRQLSNTRDEG--NQACPICLTSVKDMAFGCGHMTCRECASKVSNCPICREPIRNRLRVYTG 5665          
BLAST of FG529124 vs. TrEMBL
Match: B9SNL7_RICCO (Copine, putative OS=Ricinus communis GN=RCOM_0766490 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.762e-8
Identity = 35/85 (41.18%), Postives = 42/85 (49.41%), Query Frame = 2
Query:  173 STGESKV-----PAVEVSKTISLSRNPSLTS--------QCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            +TG SK      P V  +   ++   PS  S        Q C ICL N KD+AF CGHMTCRECGS            +NR+RLF
Sbjct:  128 TTGRSKKIVPRPPPVPYAHRPTIDHEPSNVSSPVEDERTQACPICLTNAKDLAFDCGHMTCRECGSRVSNCPICRRRISNRLRLF 212          
BLAST of FG529124 vs. TrEMBL
Match: B9H4B2_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_207134 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 4.845e-7
Identity = 26/66 (39.39%), Postives = 35/66 (53.03%), Query Frame = 2
Query:  191 VPAVEVSKTISLSRNPSLTSQCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            +P +   K +  +   +     C ICL N KD+AFGCGHMTCR+CG+            T R+RLF
Sbjct:  285 IPHMTNFKPVQPTAPTASVEPVCPICLANPKDLAFGCGHMTCRDCGASISACPLCRQPITTRLRLF 350          
BLAST of FG529124 vs. TrEMBL
Match: B9HI27_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_420659 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 8.264e-7
Identity = 34/85 (40.00%), Postives = 42/85 (49.41%), Query Frame = 2
Query:  173 STGESKV-----PAVEVSKTISLSRNPSLTS--------QCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            STG +K      P V  S      R P+  S        Q C ICL + KD+AFGCGHMTCR+CGS            T+R++LF
Sbjct:  257 STGRAKKIVPRPPPVPYSSRSVQCREPTNVSSPVLDERTQACPICLTDGKDLAFGCGHMTCRDCGSRVSNCPICRQPITSRMKLF 341          
BLAST of FG529124 vs. TAIR peptide
Match: AT1G79380.1 (| Symbols: | Ca(2)-dependent phospholipid-binding protein (Copine) family | chr1:29860812-29863023 FORWARD LENGTH=401)

HSP 1 Score: 55.4546 bits (132), Expect = 2.919e-8
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 2
Query:  248 SQCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            +Q C ICL N KD+AF CGHMTC +CGS            TNR++L+
Sbjct:  354 TQSCPICLTNRKDVAFSCGHMTCGDCGSKISNCPICRVRITNRLKLY 400          
BLAST of FG529124 vs. TAIR peptide
Match: AT5G63970.2 (| Symbols: | Copine (Calcium-dependent phospholipid-binding protein) family | chr5:25607006-25608916 REVERSE LENGTH=367)

HSP 1 Score: 53.1434 bits (126), Expect = 1.449e-7
Identity = 31/82 (37.80%), Postives = 37/82 (45.12%), Query Frame = 2
Query:  143 EKIAITSSVMSTGESKVPAVEVSKTISLSRNPSLTSQCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            E I   ++V S         E S  ++ S  P      C ICL N KDMAF CGH TC+ECG             T RIRL+
Sbjct:  290 EVIERDNAVRSVPNQMTETAEKSDRLAPSTVP-----VCPICLTNPKDMAFSCGHTTCKECGVVITTCPLCRQPITTRIRLY 366          
BLAST of FG529124 vs. TAIR peptide
Match: AT5G63970.1 (| Symbols: | Copine (Calcium-dependent phospholipid-binding protein) family | chr5:25607006-25608916 REVERSE LENGTH=367)

HSP 1 Score: 53.1434 bits (126), Expect = 1.449e-7
Identity = 31/82 (37.80%), Postives = 37/82 (45.12%), Query Frame = 2
Query:  143 EKIAITSSVMSTGESKVPAVEVSKTISLSRNPSLTSQCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            E I   ++V S         E S  ++ S  P      C ICL N KDMAF CGH TC+ECG             T RIRL+
Sbjct:  290 EVIERDNAVRSVPNQMTETAEKSDRLAPSTVP-----VCPICLTNPKDMAFSCGHTTCKECGVVITTCPLCRQPITTRIRLY 366          
BLAST of FG529124 vs. TAIR peptide
Match: AT5G14420.2 (| Symbols: RGLG2 | RING domain ligase2 | chr5:4648355-4650563 REVERSE LENGTH=468)

HSP 1 Score: 52.7582 bits (125), Expect = 1.892e-7
Identity = 23/47 (48.94%), Postives = 26/47 (55.32%), Query Frame = 2
Query:  248 SQCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            +Q C ICL N KDMAFGCGH TC ECG               RI+L+
Sbjct:  422 NQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468          
BLAST of FG529124 vs. TAIR peptide
Match: AT5G14420.4 (| Symbols: RGLG2 | RING domain ligase2 | chr5:4648355-4650563 REVERSE LENGTH=468)

HSP 1 Score: 52.7582 bits (125), Expect = 1.892e-7
Identity = 23/47 (48.94%), Postives = 26/47 (55.32%), Query Frame = 2
Query:  248 SQCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            +Q C ICL N KDMAFGCGH TC ECG               RI+L+
Sbjct:  422 NQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468          
BLAST of FG529124 vs. TAIR peptide
Match: AT5G14420.3 (| Symbols: RGLG2 | RING domain ligase2 | chr5:4648355-4650563 REVERSE LENGTH=468)

HSP 1 Score: 52.7582 bits (125), Expect = 1.892e-7
Identity = 23/47 (48.94%), Postives = 26/47 (55.32%), Query Frame = 2
Query:  248 SQCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            +Q C ICL N KDMAFGCGH TC ECG               RI+L+
Sbjct:  422 NQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468          
BLAST of FG529124 vs. TAIR peptide
Match: AT5G14420.1 (| Symbols: RGLG2 | RING domain ligase2 | chr5:4648355-4650563 REVERSE LENGTH=468)

HSP 1 Score: 52.7582 bits (125), Expect = 1.892e-7
Identity = 23/47 (48.94%), Postives = 26/47 (55.32%), Query Frame = 2
Query:  248 SQCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            +Q C ICL N KDMAFGCGH TC ECG               RI+L+
Sbjct:  422 NQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468          
BLAST of FG529124 vs. TAIR peptide
Match: AT3G01650.1 (| Symbols: RGLG1 | RING domain ligase1 | chr3:242734-245062 FORWARD LENGTH=489)

HSP 1 Score: 50.8322 bits (120), Expect = 7.190e-7
Identity = 28/76 (36.84%), Postives = 36/76 (47.37%), Query Frame = 2
Query:  173 STGESKVPAVEVSKTISLSRNPSLTS----QCCTICLGNEKDMAFGCGHMTCRECGSXXXXXXXXXXXXTNRIRLF 388
            S   S++P  E S       +  ++S    Q C ICL N K+MAFGCGH TC ECG               RI+L+
Sbjct:  414 SFSSSRIPNFEPSVPPYPFESKQMSSADDIQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489          
The following BLAST results are available for this feature:
BLAST of FG529124 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 5
Match NameE-valueIdentityDescription
B9HYC3_POPTR6.760e-946.58Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7T109_VITVI5.723e-842.86Whole genome shotgun sequence of line PN40024, sca... [more]
B9SNL7_RICCO9.762e-841.18Copine, putative OS=Ricinus communis GN=RCOM_07664... [more]
B9H4B2_POPTR4.845e-739.39Predicted protein (Fragment) OS=Populus trichocarp... [more]
B9HI27_POPTR8.264e-740.00Predicted protein (Fragment) OS=Populus trichocarp... [more]
back to top
BLAST of FG529124 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 8
Match NameE-valueIdentityDescription
AT1G79380.12.919e-848.94| Symbols: | Ca(2)-dependent phospholipid-binding... [more]
AT5G63970.21.449e-737.80| Symbols: | Copine (Calcium-dependent phospholip... [more]
AT5G63970.11.449e-737.80| Symbols: | Copine (Calcium-dependent phospholip... [more]
AT5G14420.21.892e-748.94| Symbols: RGLG2 | RING domain ligase2 | chr5:4648... [more]
AT5G14420.41.892e-748.94| Symbols: RGLG2 | RING domain ligase2 | chr5:4648... [more]
AT5G14420.31.892e-748.94| Symbols: RGLG2 | RING domain ligase2 | chr5:4648... [more]
AT5G14420.11.892e-748.94| Symbols: RGLG2 | RING domain ligase2 | chr5:4648... [more]
AT3G01650.17.190e-736.84| Symbols: RGLG1 | RING domain ligase1 | chr3:2427... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 86..119
score: 10
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10no descriptioncoord: 78..125
score: 9.3
NoneNo IPR availablePANTHERPTHR12183UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEINcoord: 82..130
score: 3.5
NoneNo IPR availableSEGsegsegcoord: 111..122
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>FG529124 ID=FG529124; Name=FG529124; organism=Pisum sativum; type=EST; length=640bp
AGAACAAATTATACATATGCTACAGAATGAGTGTAATAAGGCTAAAAGAG
AGTTTCAAGAGCAAAACAATTATGTTGAAAGGCTTAGGCAGAAGCTTGAT
AATGTCACTAAATTTCCTATGAAAATAGCTCAAGAGTCAGGGGAAAAAAT
AGCCATTACTTCGAGTGTAATGTCAACTGGTGAATCCAAAGTTCCTGCTG
TTGAGGTATCCAAGACAATAAGTTTAAGCAGAAATCCAAGCTTGACTAGT
CAGTGTTGTACAATTTGCTTAGGCAATGAGAAGGACATGGCCTTCGGTTG
TGGACACATGACTTGCAGAGAGTGTGGATCAAAAATTCGCAAGTGTCACA
TATGTAGAAAGAAAATCACCAATCGTATCAGATTGTTTCCTGGCTGATTG
ACAATGGAGTCGATATGTGCATCTTATGCCACTGACGAGCCTTAATGTGA
TCAAATCTTGACAATTAGATATTACAATAATTTGTCAAGATAAAAAGTTA
CACATACTATATTATCACCATATATATCTATGTTTTTATGTATTTATGTA
GGTATGTGTAAATATGAATGTAAAATGTTTTTGGTAGAATCCTCTTTGTT
TGTTGAGGAAAATAGAAATGCAACTAAATGAAACATCAAG
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD