FG537307

EST Overview
NameFG537307
Unique NameFG537307
TypeEST
OrganismPisum sativum (pea)
Sequence length548
Libraries
Library NameType
LIBEST_023215 MeriZ Pisum sativum Shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of FG537307 vs. TrEMBL
Match: Q9SGA4_ARATH (Putative helicase OS=Arabidopsis thaliana GN=At3g02060 PE=4 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.223e-40
Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 KHIWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAXXXXXXXXXXXXNWIFNCMAELHASLASLIKY 360
            K +WSLMQFTENLRRQYGKEP  MEIILKKLY+RRMAAD+GV +IY+SGK V MKTNMSKKVFK++T+SMT D Y++SL++EGDQI A            NW+F C++ELHASL +LIKY
Sbjct:  703 KDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASLPALIKY 822          
BLAST of FG537307 vs. TrEMBL
Match: Q94JY9_ARATH (Putative helicase OS=Arabidopsis thaliana GN=F1C9.16 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.223e-40
Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 KHIWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAXXXXXXXXXXXXNWIFNCMAELHASLASLIKY 360
            K +WSLMQFTENLRRQYGKEP  MEIILKKLY+RRMAAD+GV +IY+SGK V MKTNMSKKVFK++T+SMT D Y++SL++EGDQI A            NW+F C++ELHASL +LIKY
Sbjct:  704 KDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASLPALIKY 823          
BLAST of FG537307 vs. TrEMBL
Match: Q8H0S6_ARATH (Putative helicase OS=Arabidopsis thaliana GN=At3g02060 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.223e-40
Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 KHIWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAXXXXXXXXXXXXNWIFNCMAELHASLASLIKY 360
            K +WSLMQFTENLRRQYGKEP  MEIILKKLY+RRMAAD+GV +IY+SGK V MKTNMSKKVFK++T+SMT D Y++SL++EGDQI A            NW+F C++ELHASL +LIKY
Sbjct:  703 KDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASLPALIKY 822          
BLAST of FG537307 vs. TrEMBL
Match: D7L9I4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_477305 PE=4 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.223e-40
Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 KHIWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAXXXXXXXXXXXXNWIFNCMAELHASLASLIKY 360
            K +WSLMQFTENLRRQYGKEP  MEIILKKLY+RRMAAD+GV +IY+SGK V MKTNMSKKVFK++T+SMT D Y++SL++EGDQI A            NW+F C++ELHASL +LIKY
Sbjct:  704 KDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASLPALIKY 823          
BLAST of FG537307 vs. TrEMBL
Match: B9IA74_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_572874 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.458e-39
Identity = 80/118 (67.80%), Postives = 96/118 (81.36%), Query Frame = 1
Query:    7 IWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAXXXXXXXXXXXXNWIFNCMAELHASLASLIKY 360
            IWSLMQFTENLRRQYGKEP  MEIILKKLY+RRMAADIG+ +IY+SGK V M+TNMSKKVFK+MT+SM+S+ ++NSL F+G++IKA            NWIF C+AELHA L +LIKY
Sbjct:  700 IWSLMQFTENLRRQYGKEPSSMEIILKKLYVRRMAADIGITRIYASGKMVGMETNMSKKVFKLMTDSMSSEMHRNSLFFDGNEIKAELLLELPRAQLLNWIFQCIAELHACLPALIKY 817          
BLAST of FG537307 vs. TrEMBL
Match: D7SVE9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_68.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00032955001 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.341e-39
Identity = 77/118 (65.25%), Postives = 95/118 (80.51%), Query Frame = 1
Query:    7 IWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAXXXXXXXXXXXXNWIFNCMAELHASLASLIKY 360
            IWSLMQFTENLRRQYGKEP  ME++LKKLY++RMAAD+G+ +IY+SGKTV M+T M+KKVFK++T+SM SD  +NSLVFE +QIKA            NW+F C+AELHASL +LIKY
Sbjct:  523 IWSLMQFTENLRRQYGKEPYSMEVLLKKLYVKRMAADLGITRIYASGKTVIMRTKMNKKVFKLITDSMASDIIRNSLVFEENQIKAELLLELPREQFLNWVFQCLAELHASLPALIKY 640          
BLAST of FG537307 vs. TrEMBL
Match: Q2HRW7_MEDTR (HMG-I and HMG-Y, DNA-binding, putative OS=Medicago truncatula GN=MtrDRAFT_AC157890g33v2 PE=4 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.263e-35
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    7 IWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIK 261
            IWSLMQFTEN RRQYGKEP+PME+ILKKLYLRRMAADIGV +IYSSGKTV MKTNM+KKVFKMMTESMTSD YK+SLV EGDQIK
Sbjct:   51 IWSLMQFTENFRRQYGKEPRPMELILKKLYLRRMAADIGVTRIYSSGKTVFMKTNMNKKVFKMMTESMTSDIYKDSLVLEGDQIK 135          
BLAST of FG537307 vs. TrEMBL
Match: C5Y3R0_SORBI (Putative uncharacterized protein Sb05g020300 OS=Sorghum bicolor GN=Sb05g020300 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.183e-35
Identity = 66/120 (55.00%), Postives = 96/120 (80.00%), Query Frame = 1
Query:    1 KHIWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAXXXXXXXXXXXXNWIFNCMAELHASLASLIKY 360
            K +W+L+QFTE+LRR+YGKEP+ ME++LKKLY+RRMAAD+G+ +IY SGKT+ MKTNM+KKVF++MTE+MTS+T++NSL F G +IKA            NW+F+C+++ +  + +L+KY
Sbjct:  715 KDLWALIQFTEDLRRRYGKEPRDMELLLKKLYVRRMAADLGISRIYPSGKTIFMKTNMNKKVFRLMTEAMTSETHRNSLSFAGKEIKAELLVSLPDTLLLNWLFHCLSDCYTVIPALVKY 834          
BLAST of FG537307 vs. TrEMBL
Match: Q2R378_ORYSJ (CarD-like transcriptional regulator family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os11g32880 PE=4 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.048e-34
Identity = 65/120 (54.17%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    1 KHIWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAXXXXXXXXXXXXNWIFNCMAELHASLASLIKY 360
            K +W+L+QFTE+LRRQYGKEP+ ME++LKKLY+RRMAAD+G+ +IYSSGK + MKTNM+KKVF++M E+M+ +T++NSL F G +IK             NW+F+C+A+ +A + +L+KY
Sbjct:  684 KDLWTLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 803          
BLAST of FG537307 vs. TrEMBL
Match: Q2R377_ORYSJ (CarD-like transcriptional regulator family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os11g32880 PE=4 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.048e-34
Identity = 65/120 (54.17%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    1 KHIWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAXXXXXXXXXXXXNWIFNCMAELHASLASLIKY 360
            K +W+L+QFTE+LRRQYGKEP+ ME++LKKLY+RRMAAD+G+ +IYSSGK + MKTNM+KKVF++M E+M+ +T++NSL F G +IK             NW+F+C+A+ +A + +L+KY
Sbjct:  713 KDLWTLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY 832          
BLAST of FG537307 vs. TAIR peptide
Match: AT3G02060.2 (| Symbols: | DEAD/DEAH box helicase, putative | chr3:354412-358319 FORWARD LENGTH=822)

HSP 1 Score: 168.703 bits (426), Expect = 1.791e-42
Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 KHIWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAXXXXXXXXXXXXNWIFNCMAELHASLASLIKY 360
            K +WSLMQFTENLRRQYGKEP  MEIILKKLY+RRMAAD+GV +IY+SGK V MKTNMSKKVFK++T+SMT D Y++SL++EGDQI A            NW+F C++ELHASL +LIKY
Sbjct:  703 KDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASLPALIKY 822          
BLAST of FG537307 vs. TAIR peptide
Match: AT3G02060.1 (| Symbols: | DEAD/DEAH box helicase, putative | chr3:354409-358319 FORWARD LENGTH=823)

HSP 1 Score: 168.703 bits (426), Expect = 1.791e-42
Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 KHIWSLMQFTENLRRQYGKEPQPMEIILKKLYLRRMAADIGVIKIYSSGKTVCMKTNMSKKVFKMMTESMTSDTYKNSLVFEGDQIKAXXXXXXXXXXXXNWIFNCMAELHASLASLIKY 360
            K +WSLMQFTENLRRQYGKEP  MEIILKKLY+RRMAAD+GV +IY+SGK V MKTNMSKKVFK++T+SMT D Y++SL++EGDQI A            NW+F C++ELHASL +LIKY
Sbjct:  704 KDMWSLMQFTENLRRQYGKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPREQLLNWMFQCLSELHASLPALIKY 823          
The following BLAST results are available for this feature:
BLAST of FG537307 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q9SGA4_ARATH2.223e-4067.50Putative helicase OS=Arabidopsis thaliana GN=At3g0... [more]
Q94JY9_ARATH2.223e-4067.50Putative helicase OS=Arabidopsis thaliana GN=F1C9.... [more]
Q8H0S6_ARATH2.223e-4067.50Putative helicase OS=Arabidopsis thaliana GN=At3g0... [more]
D7L9I4_ARALY2.223e-4067.50Putative uncharacterized protein OS=Arabidopsis ly... [more]
B9IA74_POPTR2.458e-3967.80Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7SVE9_VITVI9.341e-3965.25Whole genome shotgun sequence of line PN40024, sca... [more]
Q2HRW7_MEDTR1.263e-3588.24HMG-I and HMG-Y, DNA-binding, putative OS=Medicago... [more]
C5Y3R0_SORBI8.183e-3555.00Putative uncharacterized protein Sb05g020300 OS=So... [more]
Q2R378_ORYSJ9.048e-3454.17CarD-like transcriptional regulator family protein... [more]
Q2R377_ORYSJ9.048e-3454.17CarD-like transcriptional regulator family protein... [more]
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BLAST of FG537307 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G02060.21.791e-4267.50| Symbols: | DEAD/DEAH box helicase, putative | c... [more]
AT3G02060.11.791e-4267.50| Symbols: | DEAD/DEAH box helicase, putative | c... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005118Transcription-repair-coupling factor domainPFAMPF03461TRCFcoord: 4..62
score: 1.2
NoneNo IPR availableSEGsegsegcoord: 89..100
score
NoneNo IPR availableSUPERFAMILY143517TRCF domain-likecoord: 6..115
score: 2.1
NoneNo IPR availableSEGsegsegcoord: 12..22
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>FG537307 ID=FG537307; Name=FG537307; organism=Pisum sativum; type=EST; length=548bp
AAACACATCTGGAGTCTGATGCAATTTACAGAGAATCTGCGCCGCCAATA
TGGGAAAGAGCCTCAACCCATGGAGATTATTCTGAAGAAGCTTTATTTGA
GGAGAATGGCGGCTGATATAGGGGTAATCAAAATTTACTCTTCAGGGAAG
ACAGTGTGTATGAAAACAAACATGAGTAAAAAGGTTTTCAAGATGATGAC
AGAGTCAATGACTTCGGATACATATAAAAATTCATTGGTTTTTGAAGGGG
ACCAAATTAAGGCTGAGCTTCTACTAGAGCTACCGAAAGAACAACTTCTT
AATTGGATCTTTAATTGCATGGCTGAACTTCATGCTTCGCTAGCTTCCCT
CATAAAGTACTAGTCTCTTCGCCCCTTCGATTCTACCTACATGTAAGTTG
GAGACATGACTCAATGCATACATCATATTTTATAAATACGGAGCGGATTT
ACTATGTTGACTGGCCACAAACTAATCACCGCGGGCACAAAACAAGATTT
GTATCGCTTGATTGTCTTTGCAGTGGCAGACATCTCGGCAAGTTGAGA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO:0004386helicase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR005118TRCF_C