AM161677

EST Overview


Name	AM161677
Unique Name	AM161677
Type	EST
Organism	Pisum sativum (pea)
Sequence length	179

Libraries


Library Name	Type
LIBEST_019360 Pisum sativum leaf vegetative	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v2	Pisum sativum unigene v2	EST
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Pisum sativum unigene v2	2011-03-01
Homology Analysis: Pisum sativum unigene v2 vs Trembl	2011-04-27
Homology Analysis: Pisum sativum unigene v2 vs Lotus proteins	2011-04-21
Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins	2011-04-21
InterProScan analysis for Pisum sativum unigene v2	2011-04-27
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of AM161677 vs. TrEMBL
Match: B7FJ53_MEDTR (Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.526e-12
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    1 TYSVPSNKDPLLQLQCQRLKPRFSDIXXXXXXXXXXXXXXRTFKTLALFKSKTKAPAKV 177
            TYSV   KDPLLQLQCQRL+PRFSD+              RTF TLALFKSKTKAPAKV
Sbjct:   14 TYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTTLALFKSKTKAPAKV 72

[Close]

BLAST of AM161677 vs. TrEMBL
Match: B7FJ53_MEDTR (Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.908e-12
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    1 TYSVPSNKDPLLQLQCQRLKPRFSDIXXXXXXXXXXXXXXRTFKTLALFKSKTKAPAKV 177
            TYSV   KDPLLQLQCQRL+PRFSD+              RTF TLALFKSKTKAPAKV
Sbjct:   14 TYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTTLALFKSKTKAPAKV 72

[Close]

BLAST of AM161677 vs. Lotus protein
Match: chr1.LjT04N09.220.r2.d (+ phase: 0 /est)

HSP 1 Score: 57.7658 bits (138), Expect = 1.093e-9
Identity = 30/56 (53.57%), Postives = 34/56 (60.71%), Query Frame = 1

Query:    1 TYSVPSNKDPLLQLQCQRLKPRFSDIXXXXXXXXXXXXXXRTFKTLALFKSKTKAP 168
            +YSV   KDPLL LQ QRL+P+FS +              RTF TLALFKSK KAP
Sbjct:   51 SYSVDLKKDPLLHLQSQRLRPKFSQLSFNPLPSNSSLFSSRTFTTLALFKSKAKAP 106

[Close]

BLAST of AM161677 vs. Medicago proteins
Match: IMGA|Medtr3g088040.2 (Unknown Protein (AHRD V1) chr03_pseudomolecule_IMGAG_V3.5 29195681-29193554 E EGN_Mt100125 20100825)

HSP 1 Score: 75.8702 bits (185), Expect = 5.663e-15
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    1 TYSVPSNKDPLLQLQCQRLKPRFSDIXXXXXXXXXXXXXXRTFKTLALFKSKTKAPAKV 177
            TYSV   KDPLLQLQCQRL+PRFSD+              RTF TLALFKSKTKAPAKV
Sbjct:   14 TYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTTLALFKSKTKAPAKV 72

[Close]

BLAST of AM161677 vs. Medicago proteins
Match: IMGA|Medtr3g088040.1 (Photosystem II 22 kDa protein, chloroplastic (AHRD V1 ***- Q02060) chr03_pseudomolecule_IMGAG_V3.5 29195681-29193554 E EGN_Mt100125 20100825)

HSP 1 Score: 75.8702 bits (185), Expect = 5.663e-15
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    1 TYSVPSNKDPLLQLQCQRLKPRFSDIXXXXXXXXXXXXXXRTFKTLALFKSKTKAPAKV 177
            TYSV   KDPLLQLQCQRL+PRFSD+              RTF TLALFKSKTKAPAKV
Sbjct:   14 TYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTTLALFKSKTKAPAKV 72

The following BLAST results are available for this feature:

BLAST of AM161677 vs. TrEMBL
BLAST of AM161677 vs. TrEMBL
BLAST of AM161677 vs. Lotus protein
BLAST of AM161677 vs. Medicago proteins

BLAST of AM161677 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 1


Match Name	E-value	Identity	Description
B7FJ53_MEDTR	1.526e-12	66.10	Putative uncharacterized protein (Fragment) OS=Med...	[more]

BLAST of AM161677 vs. TrEMBL
Analysis Date: 2011-04-27 (Homology Analysis: Pisum sativum unigene v2 vs Trembl)
Total hits: 1


Match Name	E-value	Identity	Description
B7FJ53_MEDTR	1.908e-12	66.10	Putative uncharacterized protein (Fragment) OS=Med...	[more]

BLAST of AM161677 vs. Lotus protein
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Lotus proteins)
Total hits: 1


Match Name	E-value	Identity	Description
chr1.LjT04N09.220.r2.d	1.093e-9	53.57	+ phase: 0 /est	[more]

BLAST of AM161677 vs. Medicago proteins
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins)
Total hits: 2


Match Name	E-value	Identity	Description
IMGA\|Medtr3g088040.2	5.663e-15	66.10	Unknown Protein (AHRD V1) chr03_pseudomolecule_IMG...	[more]
IMGA\|Medtr3g088040.1	5.663e-15	66.10	Photosystem II 22 kDa protein, chloroplastic (AHRD...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v2
Date Performed: 2011-04-27


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 27..40 score

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 27..40 score

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v2
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>AM161677 ID=AM161677; Name=AM161677; organism=Pisum sativum; type=EST; length=179bp
ACCTATTCTGTTCCCTCGAACAAAGATCCTTTGCTTCAATTACAGTGTCA
AAGATTGAAGCCTAGGTTTTCTGATATCTCATTTAGCCCACTTTCTTCTA
ATTCTAAGTCTTTTTCATCTCGCACTTTCAAAACTCTGGCTCTATTCAAA
TCAAAGACCAAAGCCCCTGCTAAGGTTGT

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