CD860792

EST Overview
NameCD860792
Unique NameCD860792
TypeEST
OrganismPisum sativum (pea)
Sequence length377
Libraries
Library NameType
LIBEST_014004 TNEcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v2Pisum sativum unigene v2EST
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Pisum sativum unigene v22011-03-01
Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins2011-04-21
Homology
[Close]
BLAST of CD860792 vs. Medicago proteins
Match: IMGA|Medtr2g012480.1 (Unknown Protein (AHRD V1) chr02_pseudomolecule_IMGAG_V3.5 3291714-3291425 F EGN_Mt100125 20100825)

HSP 1 Score: 67.0106 bits (162), Expect = 2.814e-12
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = -3 
Query:  241 MNINGGGRIICDRPIPKRGQVKLGIVSGFANSVVFMFTPSC 363
            M INGG RIIC RPIP+RGQVKLGIV G ANSVV +FT SC
Sbjct:   11 MKINGGRRIICGRPIPRRGQVKLGIVLGLANSVVCIFTTSC 51
[Close]
BLAST of CD860792 vs. Medicago proteins
Match: IMGA|Medtr3g083290.1 (Unknown Protein (AHRD V1) chr03_pseudomolecule_IMGAG_V3.5 26862317-26865199 H EGN_Mt100125 20100825)

HSP 1 Score: 62.003 bits (149), Expect = 9.053e-11
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = -3 
Query:  217 ALTAMNINGG--GRIICDRPIPKRGQVKLGIVSGFANSVVFMFTPS-CITAPTPVQ 375
            A   M INGG  GRIICDRPIPKRGQV +GIV G ANSVV +F  S    AP+ VQ
Sbjct:    7 ATAIMKINGGLLGRIICDRPIPKRGQVMVGIVLGLANSVVCIFIRSISCAAPSRVQ 62
[Close]
BLAST of CD860792 vs. Medicago proteins
Match: IMGA|Medtr3g083280.1 (F-box/LRR-repeat protein 2 (AHRD V1 *-*- Q5R3Z8); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype chr03_pseudomolecule_IMGAG_V3.5 26856764-26861433 H EGN_Mt100125 20100825)

HSP 1 Score: 62.003 bits (149), Expect = 9.053e-11
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = -3 
Query:  217 ALTAMNINGG--GRIICDRPIPKRGQVKLGIVSGFANSVVFMFTPS-CITAPTPVQ 375
            A   M INGG  GRIICDRPIPKRGQV +GIV G ANSVV +F  S    AP+ VQ
Sbjct:  597 ATAIMKINGGLLGRIICDRPIPKRGQVMVGIVLGLANSVVCIFIRSISCAAPSRVQ 652
[Close]
BLAST of CD860792 vs. Medicago proteins
Match: IMGA|Medtr3g083270.1 (Unknown Protein (AHRD V1) chr03_pseudomolecule_IMGAG_V3.5 26855058-26855407 F EGN_Mt100125 20100825)

HSP 1 Score: 62.003 bits (149), Expect = 9.053e-11
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = -3 
Query:  217 ALTAMNINGG--GRIICDRPIPKRGQVKLGIVSGFANSVVFMFTPS-CITAPTPVQ 375
            A   M INGG  GRIICDRPIPKRGQV +GIV G ANSVV +F  S    AP+ VQ
Sbjct:    7 ATAIMKINGGLLGRIICDRPIPKRGQVMVGIVLGLANSVVCIFIRSISCAAPSRVQ 62
The following BLAST results are available for this feature:
BLAST of CD860792 vs. Medicago proteins
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins)
Total hits: 4
Match NameE-valueIdentityDescription
IMGA|Medtr2g012480.12.814e-1278.05Unknown Protein (AHRD V1) chr02_pseudomolecule_IMG... [more]
IMGA|Medtr3g083290.19.053e-1164.29Unknown Protein (AHRD V1) chr03_pseudomolecule_IMG... [more]
IMGA|Medtr3g083280.19.053e-1164.29F-box/LRR-repeat protein 2 (AHRD V1 *-*- Q5R3Z8); ... [more]
IMGA|Medtr3g083270.19.053e-1164.29Unknown Protein (AHRD V1) chr03_pseudomolecule_IMG... [more]
back to top
Properties
Property NameValue
Singlet in analysisPisum sativum unigene v2
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CD860792 ID=CD860792; Name=CD860792; organism=Pisum sativum; type=EST; length=377bp
TAGTTGATTAATCAATGAAGAAGTCCTCCCGTGATACAAGCGCAAACAAG
CCAGATGAGTCAAAATAACTTATACTATCTCAAAAATAAAGGATCAGCAC
AGTTAATTTCTTAAATAGAACTGCATTTCAAGAGTTTCTCAAACATTGAA
AAGGTATATATACAACATTTTCAACCACCGTTGGTTCTTTTTCAAGTTTA
GAGATTAAAGTAAAAGCTGAACTGGAGTCGGTGCAGTAATACATGATGGT
GTGAACATGAAAACAACTGAGTTGGCAAATCCCGACACAATTCCAAGCTT
TACCTGACCTCTCTTTGGAATCGGACGGTCACAGATGATTCTTCCTCCAC
CGTTGATATTCATTGCAGTTAAAGCTG
back to top