EX568991

EST Overview
NameEX568991
Unique NameEX568991
TypeEST
OrganismPisum sativum (pea)
Sequence length378
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
BLAST of EX568991 vs. TrEMBL
Match: B9SDG4_RICCO (Delta DNA polymerase, putative OS=Ricinus communis GN=RCOM_1517510 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.487e-28
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 3
Query:    6 TTATANTKKSPIHAATFSSNLAQPPALTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQESLWDSRI 308
            +++ +  K  P HAA   SN+ QP AL S  G  DLQD+  ++E VLRQFDMN  YGPC+GMTR+ RWERA  LGLNPP++IE LLK GKV  E LWD R+
Sbjct:   26 SSSKSKKKSPPKHAAAIGSNITQPTALISHGGALDLQDDYDKNEEVLRQFDMNMAYGPCLGMTRVGRWERAQRLGLNPPKQIEDLLKGGKVNSECLWDGRV 126          
BLAST of EX568991 vs. TrEMBL
Match: B9IPX7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_665537 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.337e-26
Identity = 60/98 (61.22%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   15 TANTKKSPIHAATFSSNLAQPPALTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQESLWDSRI 308
            T+ +K S IHAAT  S++ QP AL S +  PDL+D+  + E VLRQFDMN  YGPC+GM+RLARWERA  LGLNPP+EIE LLK  KV+ E LWD  I
Sbjct:   25 TSTSKSSLIHAATLGSDITQPTALVSHDS-PDLKDDYDKHEDVLRQFDMNPAYGPCLGMSRLARWERAQRLGLNPPKEIEGLLKGEKVRSECLWDGCI 121          
BLAST of EX568991 vs. TrEMBL
Match: Q1H568_ARATH (At1g09815 OS=Arabidopsis thaliana GN=At1g09815 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.515e-25
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   18 ANTKKSPIHAATFSSNLAQPPALTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQESLWDSRI 308
            ++ K +P HAA   S++ QP AL S +G  DL ++  + E +LRQFDMN  YGPC+GMTRL RWERAV LG+NPP EIE+LLK+GKVQQ+ LW  R+
Sbjct:   29 SSRKVAPKHAAAQGSDVTQPAALIS-HGSVDLNEDYDKEEEMLRQFDMNITYGPCLGMTRLDRWERAVRLGMNPPNEIEKLLKTGKVQQDCLWQGRV 124          
BLAST of EX568991 vs. TrEMBL
Match: Q8L9H3_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.374e-25
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   18 ANTKKSPIHAATFSSNLAQPPALTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQESLWDSRI 308
            ++ K +P HAA   S++ QP AL S +G  DL ++  + E +LRQFDMN  YGPC+GMTRL RW+RAV LG+NPP EIE+LLK+GKVQQ+ LW  R+
Sbjct:   29 SSRKVAPKHAAAQGSDVTQPAALIS-HGSVDLNEDYDKEEEMLRQFDMNITYGPCLGMTRLDRWQRAVRLGMNPPNEIEKLLKTGKVQQDCLWQGRV 124          
BLAST of EX568991 vs. TrEMBL
Match: D7KJU8_ARALY (DNA polymerase delta subunit 4 family OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_471085 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.756e-25
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   18 ANTKKSPIHAATFSSNLAQPPALTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQESLWDSRI 308
            ++ K +P HAA   S++ QP AL S +G  DL ++  + E +LRQFDMN  YGPC+GMTRL RWERA+ LG+NPP EIE+LLK+GKVQQ+ LW  R+
Sbjct:   27 SSRKVTPKHAAAQGSDVIQPAALIS-HGSLDLNEDYDKEEEMLRQFDMNIAYGPCLGMTRLDRWERALRLGMNPPNEIEKLLKTGKVQQDCLWQGRV 122          
BLAST of EX568991 vs. TrEMBL
Match: D7T7F4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_39.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024265001 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.852e-23
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    3 PTTATANTKKSPIHAATFSSNLAQPPALTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQESLWD 299
            P  +  +TK  P H AT  S++ QP  L++ N +    DE   +E+VLRQFDMN  YGPC+GM+RLARWERA  LGLNPP+EIE LLK GK + + LWD
Sbjct:   19 PKPSKKSTKIQPTHVATLGSDVVQPSTLSAHNLQ---DDEYDGNETVLRQFDMNMAYGPCLGMSRLARWERAQRLGLNPPKEIETLLKQGKARADCLWD 114          
BLAST of EX568991 vs. TrEMBL
Match: A5AG58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024389 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.418e-23
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    3 PTTATANTKKSPIHAATFSSNLAQPPALTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQESLWD 299
            P  +  +TK  P H AT  S++ QP  L++ N +    DE   +E+VLRQFDMN  YGPC+GM+RLARWERA  LGLNPP+EIE LLK GK + + LWD
Sbjct:   24 PKPSKKSTKIPPTHVATLGSDVVQPSTLSAHNLQ---DDEYDGNETVLRQFDMNMAYGPCLGMSRLARWERAQRLGLNPPKEIETLLKQGKARADCLWD 119          
BLAST of EX568991 vs. TrEMBL
Match: A9PI30_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_571392 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.387e-23
Identity = 55/101 (54.46%), Postives = 67/101 (66.34%), Query Frame = 3
Query:    6 TTATANTKKSPIHAATFSSNLAQPPALTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQESLWDSRI 308
            T  T++ K S  H A+  S++ QP A  S +G PD +D   E E +LRQFDMN  YGPC+GM+RLARWERA  LGLNPP E E LLK+  VQ E  WD R+
Sbjct:   23 TKPTSSKKSSLHHIASLGSDITQPTAQVS-HGSPDHKDYYDEHEELLRQFDMNMAYGPCLGMSRLARWERAQRLGLNPPNEFEGLLKAEMVQSECWWDGRV 122          
BLAST of EX568991 vs. TrEMBL
Match: A9PA85_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.387e-23
Identity = 55/101 (54.46%), Postives = 67/101 (66.34%), Query Frame = 3
Query:    6 TTATANTKKSPIHAATFSSNLAQPPALTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQESLWDSRI 308
            T  T++ K S  H A+  S++ QP A  S +G PD +D   E E +LRQFDMN  YGPC+GM+RLARWERA  LGLNPP E E LLK+  VQ E  WD R+
Sbjct:   23 TKPTSSKKSSLHHIASLGSDITQPTAQVS-HGSPDHKDYYDEHEGLLRQFDMNMAYGPCLGMSRLARWERAQRLGLNPPNEFEGLLKAEMVQSECWWDGRV 122          
BLAST of EX568991 vs. TrEMBL
Match: A9NT40_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.884e-16
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 3
Query:   51 TFSSNLAQPPALTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQESLWDSRI 308
            T  S+ AQP AL ++ G+ D  D+    E VLRQFDMN  YGPCIG+ RL RWERA  LGL+PPQ+++  L+      + LW+ R+
Sbjct:   51 TLGSDSAQPAALIAK-GRRDYNDDIDNMEEVLRQFDMNMKYGPCIGVPRLERWERASKLGLDPPQQVKVFLERAGGISDCLWEGRV 135          
BLAST of EX568991 vs. SwissProt
Match: DPOD4_BOVIN (DNA polymerase delta subunit 4 OS=Bos taurus GN=POLD4 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 6.968e-9
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 3
Query:  105 PDLQDEC------SESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKS 269
            PDL +E        E   +LRQFD+   YGPC G+TRL RW RA  +GL PP E+ ++L+S
Sbjct:   30 PDLGEEPLPLSVDEEELELLRQFDLAWQYGPCTGITRLQRWHRAEQMGLKPPPEVHQVLQS 90          
BLAST of EX568991 vs. SwissProt
Match: DPOD4_HUMAN (DNA polymerase delta subunit 4 OS=Homo sapiens GN=POLD4 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 9.101e-9
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 3
Query:  102 KPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKS 269
            +P  +DE      +LRQFD+   YGPC G+TRL RW RA  +GL PP E+ ++LK+
Sbjct:   35 EPQPRDEEEAELELLRQFDLAWQYGPCTGITRLQRWCRAKQMGLEPPPEVWQVLKT 90          
BLAST of EX568991 vs. SwissProt
Match: DPOD4_MOUSE (DNA polymerase delta subunit 4 OS=Mus musculus GN=Pold4 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.189e-8
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 3
Query:   75 PPALTSRNGKPDLQDEC---SESES---VLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQ---QESLW 296
            PP  +     P+L ++    S+ E+   +LRQFD+   YGPC G+TRL RW RA  +GL PP E+ ++LK+       Q SLW
Sbjct:   20 PPGHSKGELAPELGEDTQSLSQEETELELLRQFDLAWQYGPCTGITRLQRWSRAEQMGLKPPLEVYQVLKAHPEDPHFQCSLW 102          
BLAST of EX568991 vs. SwissProt
Match: DPOD4_SCHPO (DNA polymerase delta subunit 4 OS=Schizosaccharomyces pombe GN=cdm1 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.006e-7
Identity = 24/69 (34.78%), Postives = 40/69 (57.97%), Query Frame = 3
Query:   84 LTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQES 290
            +  R  +P   +  ++ E +L  FD    YGP +GMTR+ RW+RA N  LNPP+ + ++L   +  +E+
Sbjct:   77 MAERISEPIHCENITKVEFILHHFDTTARYGPYLGMTRMQRWKRAKNFNLNPPETVGKILMLEEADEEN 145          
BLAST of EX568991 vs. TAIR peptide
Match: AT1G09815.1 (| Symbols: POLD4 | polymerase delta 4 | chr1:3189460-3190050 FORWARD LENGTH=124)

HSP 1 Score: 119.013 bits (297), Expect = 6.972e-28
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   18 ANTKKSPIHAATFSSNLAQPPALTSRNGKPDLQDECSESESVLRQFDMNTVYGPCIGMTRLARWERAVNLGLNPPQEIERLLKSGKVQQESLWDSRI 308
            ++ K +P HAA   S++ QP AL S +G  DL ++  + E +LRQFDMN  YGPC+GMTRL RWERAV LG+NPP EIE+LLK+GKVQQ+ LW  R+
Sbjct:   29 SSRKVAPKHAAAQGSDVTQPAALIS-HGSVDLNEDYDKEEEMLRQFDMNITYGPCLGMTRLDRWERAVRLGMNPPNEIEKLLKTGKVQQDCLWQGRV 124          
The following BLAST results are available for this feature:
BLAST of EX568991 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9SDG4_RICCO9.487e-2857.43Delta DNA polymerase, putative OS=Ricinus communis... [more]
B9IPX7_POPTR2.337e-2661.22Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q1H568_ARATH1.515e-2557.73At1g09815 OS=Arabidopsis thaliana GN=At1g09815 PE=... [more]
Q8L9H3_ARATH3.374e-2556.70Putative uncharacterized protein OS=Arabidopsis th... [more]
D7KJU8_ARALY5.756e-2556.70DNA polymerase delta subunit 4 family OS=Arabidops... [more]
D7T7F4_VITVI1.852e-2354.55Whole genome shotgun sequence of line PN40024, sca... [more]
A5AG58_VITVI2.418e-2354.55Putative uncharacterized protein OS=Vitis vinifera... [more]
A9PI30_POPTR5.387e-2354.46Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PA85_POPTR5.387e-2354.46Putative uncharacterized protein OS=Populus tricho... [more]
A9NT40_PICSI4.884e-1648.84Putative uncharacterized protein OS=Picea sitchens... [more]
back to top
BLAST of EX568991 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
DPOD4_BOVIN6.968e-947.54DNA polymerase delta subunit 4 OS=Bos taurus GN=PO... [more]
DPOD4_HUMAN9.101e-948.21DNA polymerase delta subunit 4 OS=Homo sapiens GN=... [more]
DPOD4_MOUSE1.189e-840.96DNA polymerase delta subunit 4 OS=Mus musculus GN=... [more]
DPOD4_SCHPO1.006e-734.78DNA polymerase delta subunit 4 OS=Schizosaccharomy... [more]
back to top
BLAST of EX568991 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G09815.16.972e-2857.73| Symbols: POLD4 | polymerase delta 4 | chr1:31894... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 1..9
score
NoneNo IPR availableSEGsegsegcoord: 36..47
score
NoneNo IPR availableSEGsegsegcoord: 110..126
score
IPR007218DNA polymerase delta, subunit 4PFAMPF04081DNA_pol_delta_4coord: 39..95
score: 1.5

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX568991 ID=EX568991; Name=EX568991; organism=Pisum sativum; type=EST; length=378bp
ACCCCACCACCGCCACAGCCAACACCAAAAAATCTCCTATCCACGCCGCC
ACTTTCAGTTCCAATCTCGCCCAACCACCAGCCCTCACATCCCGCAACGG
CAAACCAGATCTCCAAGATGAATGTAGCGAAAGCGAGTCGGTGTTGCGCC
AATTTGACATGAACACGGTTTACGGTCCTTGTATTGGGATGACGAGGCTG
GCACGCTGGGAGCGTGCGGTGAATCTCGGTTTGAACCCTCCGCAGGAAAT
TGAGAGGCTTTTGAAAAGTGGTAAAGTTCAGCAAGAATCCCTCTGGGATA
GTCGCATTTAGAATGCTTTTGTGTGTTTTATTATTATCATTATAACCTAT
AATCAAAGTGTAATCTTTGTGTTTAGAT
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: INTERPRO
TermDefinition
IPR007218DNA_pol_delta_4