EX570561

EST Overview
NameEX570561
Unique NameEX570561
TypeEST
OrganismPisum sativum (pea)
Sequence length459
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of EX570561 vs. TrEMBL
Match: B9RI11_RICCO (Nucleolar complex-associated protein, putative OS=Ricinus communis GN=RCOM_1575060 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.097e-7
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 2
Query:    2 RNGNATSDTIGSTSVTRSFNEDDLRRKFSSHFMILHEIKENERLRRKLNKTAQSLQLYEQY 184
            R G++    I     T S +ED+LR+KFS HF++L ++KENERLR +L+    +LQLY++Y
Sbjct:  761 RKGSSKISVIDRILDTVSADEDELRKKFSDHFVLLRDLKENERLRGQLDHATLALQLYDEY 821          
BLAST of EX570561 vs. TrEMBL
Match: D7T0Y6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_85.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036806001 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.114e-7
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 2
Query:    5 NGNATSDTIGST-SVTRSFNEDDLRRKFSSHFMILHEIKENERLRRKLNKTAQSLQLYEQY 184
            +G++ + +I  T       +ED LR+K S HF ILH+IKENERLR +L++   SLQ+YE++
Sbjct:  767 SGSSGAASINPTPDAATPIDEDGLRKKLSEHFTILHDIKENERLRGELDRVTLSLQVYEEH 827          
BLAST of EX570561 vs. TrEMBL
Match: B9H628_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_650939 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.114e-7
Identity = 24/46 (52.17%), Postives = 36/46 (78.26%), Query Frame = 2
Query:   47 TRSFNEDDLRRKFSSHFMILHEIKENERLRRKLNKTAQSLQLYEQY 184
            T S +ED+LR+K S HF +L + KE+E+LR +L++T  +LQLYE+Y
Sbjct:  212 TGSLDEDELRKKLSDHFSLLRDFKESEKLRTELDRTTSALQLYEEY 257          
The following BLAST results are available for this feature:
BLAST of EX570561 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 3
Match NameE-valueIdentityDescription
B9RI11_RICCO1.097e-745.90Nucleolar complex-associated protein, putative OS=... [more]
D7T0Y6_VITVI7.114e-745.90Whole genome shotgun sequence of line PN40024, sca... [more]
B9H628_POPTR7.114e-752.17Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 53..73
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX570561 ID=EX570561; Name=EX570561; organism=Pisum sativum; type=EST; length=459bp
ACGCAATGGCAATGCTACATCAGATACCATTGGTTCCACATCTGTAACGA
GGTCATTTAATGAGGATGATTTACGAAGGAAATTTAGTTCCCATTTCATG
ATTCTTCATGAGATCAAGGAGAATGAAAGGTTGAGAAGGAAGTTGAATAA
GACTGCACAATCACTTCAGCTATATGAACAATACAAGAAACAAAAAAAGA
AACGATCAAAACCAAGTAAATGATCAGTCATTGTTCAGTGATGCAGGCCT
ATAATTGTTAAGAATTATCATTGTTTGATTGTATCTTATTTATATTTCCA
GTTTTGTTGTTATTAAAGTTCCATTTCCAATAGAGATACTTCTCAACCAG
TTATGTATCACTATTTTATGTTTTTTTGACAGAGGACACTTTTTCTAGTA
AAATATGAGATACTGCAAAACATTATCATTAGGAAGTAAATCATCTTGTT
TGTGTGCTG
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