EX569492

EST Overview
NameEX569492
Unique NameEX569492
TypeEST
OrganismPisum sativum (pea)
Sequence length644
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
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BLAST of EX569492 vs. TrEMBL
Match: B9SBI7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0718480 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 4.904e-7
Identity = 41/117 (35.04%), Postives = 59/117 (50.43%), Query Frame = 2 
Query:   14 AVPCSEMLDSGISAQDIVCQDNKVDDTVTQASDLVSSEIVPNDMEIDVSLEHKPAVIEES--LPNTVVPAKEEPLNFDAFNXXXXXXXXXXXXXXXXXQSRGLKCGGTLQERAARLF 358
            A+ CSE   + ++  D++  +   +D +   S  VSS   P  +E+   +E KP  ++    + N      E+PLNFD +N                 Q+RGLKCGGTLQERAARLF
Sbjct:  315 AITCSEA--AVVTGIDVIKAEKNENDGLDSQSVQVSS---PARVEV---IETKPITVDSETVVVNEKATDLEKPLNFDDYNAVDELEALGIERLKTELQARGLKCGGTLQERAARLF 423
[Close]
BLAST of EX569492 vs. TAIR peptide
Match: AT4G01000.1 (| Symbols: | Ubiquitin-like superfamily protein | chr4:432186-433727 REVERSE LENGTH=415)

HSP 1 Score: 54.6842 bits (130), Expect = 5.021e-8
Identity = 40/119 (33.61%), Postives = 56/119 (47.06%), Query Frame = 2 
Query:    5 EANAVPCSEMLDSGISAQDIVCQDNKVDDTVTQAS-DLVSSEIVPNDMEIDVSLEHKPAVIEESLPNTVVPAKEEPLNFDAFNXXXXXXXXXXXXXXXXXQSRGLKCGGTLQERAARLF 358
            E N +P S  +D   +  D + Q  KV+ +   A  +LV  ++    +    +++ +    E    + V     EPLNFD FN                 QSRGLKCGGTL+ERAARLF
Sbjct:  281 EMNDLPVSVAVDDANTVADEMDQLEKVEKSSGDAGKNLV--DVACETLITSAAVKREGTAKETVSVDAVCCKPVEPLNFDDFNSPADMEVLGMERLKTELQSRGLKCGGTLRERAARLF 397
The following BLAST results are available for this feature:
BLAST of EX569492 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
B9SBI7_RICCO4.904e-735.04Putative uncharacterized protein OS=Ricinus commun... [more]
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BLAST of EX569492 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G01000.15.021e-833.61| Symbols: | Ubiquitin-like superfamily protein |... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12786SPLICING FACTOR SF3A-RELATEDcoord: 74..130
score: 1.7
NoneNo IPR availablePANTHERPTHR12786:SF1UNCHARACTERIZEDcoord: 74..130
score: 1.7
NoneNo IPR availableSEGsegsegcoord: 84..100
score
NoneNo IPR availableSEGsegsegcoord: 88..99
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX569492 ID=EX569492; Name=EX569492; organism=Pisum sativum; type=EST; length=644bp
GGCCGAGGCTAATGCTGTTCCTTGTTCAGAGATGTTGGATTCTGGAATTA
GTGCTCAAGATATTGTCTGTCAGGATAACAAGGTTGATGACACTGTTACT
CAAGCCTCAGATCTCGTGAGCTCTGAAATTGTGCCTAATGACATGGAAAT
TGACGTTTCTCTTGAGCATAAACCAGCTGTCATTGAAGAAAGCTTGCCAA
ACACTGTTGTTCCAGCAAAGGAAGAGCCTCTGAATTTTGATGCTTTTAAT
ACAGCTGCAGAACTTGAGGCTCTTGGCTTGGAAAAGTTGAAGACAGAACT
CCAGTCACGAGGCCTAAAATGTGGAGGTACTTTACAGGAGCGTGCTGCCA
GACTTTTTCTTTTAAAATCGACACCTCTGGATAAACTACCGTAGAAACTG
CTAGCAAAGAAATAAACAGTGCATTGATATGCATCTATCATCCGTGAAGA
AGATCCTTCTTTGTACAGTGTTTTTAAACGGATCCTACGTTTTTGTTTAA
CAGTTAATTGTGTACTGGTTTGTGTAATAGACTAATGCGACCATTTTATG
TTCATTCTGTTTTTCCAGTGCAATAATTATGCTACCAAACTGGCAAAGAA
AGCTGAACAATGTCCATTGTATTATAATTAAGTCTTATTGTGTT
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