EX570212

EST Overview
NameEX570212
Unique NameEX570212
TypeEST
OrganismPisum sativum (pea)
Sequence length344
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
Homology
BLAST of EX570212 vs. TrEMBL
Match: D7SLA7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025336001 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.031e-13
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFRVFQ 153
            VEQVDYEMALEYATQSGVSEEP+E IY+QSLE     ID H+P+F FR++Q
Sbjct:  623 VEQVDYEMALEYATQSGVSEEPREAIYLQSLEDGKNFIDFHSPVFAFRLYQ 673          
BLAST of EX570212 vs. TrEMBL
Match: B9RI75_RICCO (Type II DNA topoisomerase VI subunit B, putative OS=Ricinus communis GN=RCOM_1576900 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.918e-13
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFRV 147
            VE+VDYEMALEYATQSGVSEEP+E IYIQ LE EN+ ID  +P F+FR+
Sbjct:  606 VEKVDYEMALEYATQSGVSEEPREDIYIQELEIENRFIDFQSPFFIFRL 654          
BLAST of EX570212 vs. TrEMBL
Match: C5X862_SORBI (Putative uncharacterized protein Sb02g018660 OS=Sorghum bicolor GN=Sb02g018660 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.652e-12
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFR 144
            VEQVDYEMAL+YA QSGVSEEP+E IY+ SLE   K +DL +P+FVFR
Sbjct:  642 VEQVDYEMALDYAMQSGVSEEPREAIYLNSLEGSYKFVDLQSPVFVFR 689          
BLAST of EX570212 vs. TrEMBL
Match: Q6UFU6_ORYSJ (Topoisomerase 6 subunit B-like protein OS=Oryza sativa subsp. japonica PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.646e-11
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFR 144
            VEQVDYEMALEYA QSGVSEEP+E +Y+ SLE   K ID  +P+FVFR
Sbjct:  565 VEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFVFR 612          
BLAST of EX570212 vs. TrEMBL
Match: Q6H442_ORYSJ (Os09g0279600 protein OS=Oryza sativa subsp. japonica GN=P0651G05.4 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.646e-11
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFR 144
            VEQVDYEMALEYA QSGVSEEP+E +Y+ SLE   K ID  +P+FVFR
Sbjct:  646 VEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFVFR 693          
BLAST of EX570212 vs. TrEMBL
Match: Q5ZPR4_ORYSI (Putative topoisomerase VI subunit B OS=Oryza sativa subsp. indica GN=topo6B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.646e-11
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFR 144
            VEQVDYEMALEYA QSGVSEEP+E +Y+ SLE   K ID  +P+FVFR
Sbjct:  646 VEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFVFR 693          
BLAST of EX570212 vs. TrEMBL
Match: D7KZW4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_318827 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.646e-11
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEA-ENKTIDLHTPLFVFRV 147
            VEQVDYEMALEYATQSGVSEEP+E IY+Q L+  ++  IDLH+P FVFR+
Sbjct:  640 VEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPNFVFRL 689          
BLAST of EX570212 vs. TrEMBL
Match: B8BDQ4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30680 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.646e-11
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFR 144
            VEQVDYEMALEYA QSGVSEEP+E +Y+ SLE   K ID  +P+FVFR
Sbjct:  646 VEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFVFR 693          
BLAST of EX570212 vs. TrEMBL
Match: D5AEH0_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.628e-9
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFRVFQ 153
            VEQVD EMALEYATQSG+++E +ET YI++LE      D H+P+ V R+FQ
Sbjct:  422 VEQVDIEMALEYATQSGITQEARETTYIRALEGVQNFYDFHSPVCVIRLFQ 472          
BLAST of EX570212 vs. TrEMBL
Match: D5A810_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.628e-9
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFRVFQ 153
            VEQVD EMALEYATQSG+++E +ET YI++LE      D H+P+ V R+FQ
Sbjct:  626 VEQVDIEMALEYATQSGITQEARETTYIRALEGVQNFYDFHSPVCVIRLFQ 676          
BLAST of EX570212 vs. SwissProt
Match: TOP6B_ARATH (DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana GN=TOP6B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.695e-13
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEA-ENKTIDLHTPLFVFRV 147
            VEQVDYEMALEYATQSGVSEEP+E IY+Q L+  ++  IDLH+P FVFR+
Sbjct:  619 VEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPTFVFRL 668          
BLAST of EX570212 vs. TAIR peptide
Match: AT3G20780.1 (| Symbols: ATTOP6B, BIN3, HYP6, RHL3, TOP6B | topoisomerase 6 subunit B | chr3:7264025-7268498 REVERSE LENGTH=670)

HSP 1 Score: 73.1738 bits (178), Expect = 3.733e-14
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:    1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEA-ENKTIDLHTPLFVFRV 147
            VEQVDYEMALEYATQSGVSEEP+E IY+Q L+  ++  IDLH+P FVFR+
Sbjct:  619 VEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPTFVFRL 668          
The following BLAST results are available for this feature:
BLAST of EX570212 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7SLA7_VITVI1.031e-1372.55Whole genome shotgun sequence of line PN40024, sca... [more]
B9RI75_RICCO3.918e-1373.47Type II DNA topoisomerase VI subunit B, putative O... [more]
C5X862_SORBI9.652e-1270.83Putative uncharacterized protein Sb02g018660 OS=So... [more]
Q6UFU6_ORYSJ1.646e-1170.83Topoisomerase 6 subunit B-like protein OS=Oryza sa... [more]
Q6H442_ORYSJ1.646e-1170.83Os09g0279600 protein OS=Oryza sativa subsp. japoni... [more]
Q5ZPR4_ORYSI1.646e-1170.83Putative topoisomerase VI subunit B OS=Oryza sativ... [more]
D7KZW4_ARALY1.646e-1172.00Putative uncharacterized protein OS=Arabidopsis ly... [more]
B8BDQ4_ORYSI1.646e-1170.83Putative uncharacterized protein OS=Oryza sativa s... [more]
D5AEH0_PICSI2.628e-958.82Putative uncharacterized protein OS=Picea sitchens... [more]
D5A810_PICSI2.628e-958.82Putative uncharacterized protein OS=Picea sitchens... [more]
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BLAST of EX570212 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
TOP6B_ARATH4.695e-1372.00DNA topoisomerase 6 subunit B OS=Arabidopsis thali... [more]
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BLAST of EX570212 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G20780.13.733e-1472.00| Symbols: ATTOP6B, BIN3, HYP6, RHL3, TOP6B | topo... [more]
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Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX570212 ID=EX570212; Name=EX570212; organism=Pisum sativum; type=EST; length=344bp
GTTGAACAGGTGGATTACGAAATGGCATTGGAGTATGCCACGCAGAGTGG
AGTTAGTGAGGAACCCAAGGAAACAATATACATACAATCATTGGAAGCAG
AAAATAAGACGATCGACTTACACACTCCATTATTTGTTTTCAGAGTCTTT
CAGTAGATTTGGAAAATTGATTTGAAAATGAAAAGAAATGAATGAAATTG
ATTTTTCAAATTAAATTATATCACATTACACAAAGGAAAGTTGTTGTATC
AATTATTTTTATTTCTAGGAAATGTCGATTTATTGTGTCAATTATTTTTA
GGAAGAATTAATTGATTGTTTGAGCTATTTGTGTGGGATCAAAT
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