EX570212
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EX570212 vs. TrEMBL
Match: D7SLA7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025336001 PE=4 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.031e-13 Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFRVFQ 153 VEQVDYEMALEYATQSGVSEEP+E IY+QSLE ID H+P+F FR++Q Sbjct: 623 VEQVDYEMALEYATQSGVSEEPREAIYLQSLEDGKNFIDFHSPVFAFRLYQ 673
BLAST of EX570212 vs. TrEMBL
Match: B9RI75_RICCO (Type II DNA topoisomerase VI subunit B, putative OS=Ricinus communis GN=RCOM_1576900 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.918e-13 Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFRV 147 VE+VDYEMALEYATQSGVSEEP+E IYIQ LE EN+ ID +P F+FR+ Sbjct: 606 VEKVDYEMALEYATQSGVSEEPREDIYIQELEIENRFIDFQSPFFIFRL 654
BLAST of EX570212 vs. TrEMBL
Match: C5X862_SORBI (Putative uncharacterized protein Sb02g018660 OS=Sorghum bicolor GN=Sb02g018660 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 9.652e-12 Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFR 144 VEQVDYEMAL+YA QSGVSEEP+E IY+ SLE K +DL +P+FVFR Sbjct: 642 VEQVDYEMALDYAMQSGVSEEPREAIYLNSLEGSYKFVDLQSPVFVFR 689
BLAST of EX570212 vs. TrEMBL
Match: Q6UFU6_ORYSJ (Topoisomerase 6 subunit B-like protein OS=Oryza sativa subsp. japonica PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.646e-11 Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFR 144 VEQVDYEMALEYA QSGVSEEP+E +Y+ SLE K ID +P+FVFR Sbjct: 565 VEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFVFR 612
BLAST of EX570212 vs. TrEMBL
Match: Q6H442_ORYSJ (Os09g0279600 protein OS=Oryza sativa subsp. japonica GN=P0651G05.4 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.646e-11 Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFR 144 VEQVDYEMALEYA QSGVSEEP+E +Y+ SLE K ID +P+FVFR Sbjct: 646 VEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFVFR 693
BLAST of EX570212 vs. TrEMBL
Match: Q5ZPR4_ORYSI (Putative topoisomerase VI subunit B OS=Oryza sativa subsp. indica GN=topo6B PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.646e-11 Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFR 144 VEQVDYEMALEYA QSGVSEEP+E +Y+ SLE K ID +P+FVFR Sbjct: 646 VEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFVFR 693
BLAST of EX570212 vs. TrEMBL
Match: D7KZW4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_318827 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.646e-11 Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEA-ENKTIDLHTPLFVFRV 147 VEQVDYEMALEYATQSGVSEEP+E IY+Q L+ ++ IDLH+P FVFR+ Sbjct: 640 VEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPNFVFRL 689
BLAST of EX570212 vs. TrEMBL
Match: B8BDQ4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30680 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.646e-11 Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFR 144 VEQVDYEMALEYA QSGVSEEP+E +Y+ SLE K ID +P+FVFR Sbjct: 646 VEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFVFR 693
BLAST of EX570212 vs. TrEMBL
Match: D5AEH0_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 2.628e-9 Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFRVFQ 153 VEQVD EMALEYATQSG+++E +ET YI++LE D H+P+ V R+FQ Sbjct: 422 VEQVDIEMALEYATQSGITQEARETTYIRALEGVQNFYDFHSPVCVIRLFQ 472
BLAST of EX570212 vs. TrEMBL
Match: D5A810_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 2.628e-9 Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEAENKTIDLHTPLFVFRVFQ 153 VEQVD EMALEYATQSG+++E +ET YI++LE D H+P+ V R+FQ Sbjct: 626 VEQVDIEMALEYATQSGITQEARETTYIRALEGVQNFYDFHSPVCVIRLFQ 676
BLAST of EX570212 vs. SwissProt
Match: TOP6B_ARATH (DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana GN=TOP6B PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.695e-13 Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEA-ENKTIDLHTPLFVFRV 147 VEQVDYEMALEYATQSGVSEEP+E IY+Q L+ ++ IDLH+P FVFR+ Sbjct: 619 VEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPTFVFRL 668
BLAST of EX570212 vs. TAIR peptide
Match: AT3G20780.1 (| Symbols: ATTOP6B, BIN3, HYP6, RHL3, TOP6B | topoisomerase 6 subunit B | chr3:7264025-7268498 REVERSE LENGTH=670) HSP 1 Score: 73.1738 bits (178), Expect = 3.733e-14 Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1 Query: 1 VEQVDYEMALEYATQSGVSEEPKETIYIQSLEA-ENKTIDLHTPLFVFRV 147 VEQVDYEMALEYATQSGVSEEP+E IY+Q L+ ++ IDLH+P FVFR+ Sbjct: 619 VEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPTFVFRL 668 The following BLAST results are available for this feature:
BLAST of EX570212 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 10
BLAST of EX570212 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot) Total hits: 1
BLAST of EX570212 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 1
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EX570212 ID=EX570212; Name=EX570212; organism=Pisum sativum; type=EST; length=344bpback to top |