EX570397

EST Overview
NameEX570397
Unique NameEX570397
TypeEST
OrganismPisum sativum (pea)
Sequence length399
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v2Pisum sativum unigene v2EST
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
[Close]
BLAST of EX570397 vs. TAIR peptide
Match: AT5G04600.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:1323700-1325486 FORWARD LENGTH=222)

HSP 1 Score: 50.0618 bits (118), Expect = 4.608e-7
Identity = 23/48 (47.92%), Postives = 27/48 (56.25%), Query Frame = 3 
Query:    3 EEHXXXXXXXXXXXXXXXXXIEAAGIDYECPEIVGNLHPAPKKIKFED 146
            EEH                 IEAAGI+YECPE+VGN  P PK+IKF +
Sbjct:  173 EEHRKMLQKIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSE 220
[Close]
BLAST of EX570397 vs. TAIR peptide
Match: AT5G04600.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:1323700-1325486 FORWARD LENGTH=222)

HSP 1 Score: 50.0618 bits (118), Expect = 4.608e-7
Identity = 23/48 (47.92%), Postives = 27/48 (56.25%), Query Frame = 3 
Query:    3 EEHXXXXXXXXXXXXXXXXXIEAAGIDYECPEIVGNLHPAPKKIKFED 146
            EEH                 IEAAGI+YECPE+VGN  P PK+IKF +
Sbjct:  173 EEHRKMLQKIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSE 220
[Close]
BLAST of EX570397 vs. Lotus protein
Match: chr6.CM0778.290.r2.d (+ phase: 2 /pseudo/partial)

HSP 1 Score: 56.225 bits (134), Expect = 3.955e-9
Identity = 27/48 (56.25%), Postives = 29/48 (60.42%), Query Frame = 3 
Query:    3 EEHXXXXXXXXXXXXXXXXXIEAAGIDYECPEIVGNLHPAPKKIKFED 146
            EEH                 I AAGIDYECPEIVGN+ PAPKK+KFED
Sbjct:  162 EEHRKLVEKILSRDKKRRKSIVAAGIDYECPEIVGNIQPAPKKLKFED 209
[Close]
BLAST of EX570397 vs. Soybean peptides
Match: Glyma09g17080.2|PACid:16275818 ()

HSP 1 Score: 59.6918 bits (143), Expect = 8.390e-10
Identity = 29/48 (60.42%), Postives = 30/48 (62.50%), Query Frame = 3 
Query:    3 EEHXXXXXXXXXXXXXXXXXIEAAGIDYECPEIVGNLHPAPKKIKFED 146
            EEH                 IEAAGIDYECPEIVGN+ PAPKKIKFED
Sbjct:  167 EEHKKLVEKVLKHDQKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFED 214
[Close]
BLAST of EX570397 vs. Soybean peptides
Match: Glyma09g17080.1|PACid:16275817 ()

HSP 1 Score: 59.6918 bits (143), Expect = 8.390e-10
Identity = 29/48 (60.42%), Postives = 30/48 (62.50%), Query Frame = 3 
Query:    3 EEHXXXXXXXXXXXXXXXXXIEAAGIDYECPEIVGNLHPAPKKIKFED 146
            EEH                 IEAAGIDYECPEIVGN+ PAPKKIKFED
Sbjct:  167 EEHKKLVEKVLKHDQKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFED 214
[Close]
BLAST of EX570397 vs. Soybean peptides
Match: Glyma02g29190.2|PACid:16248763 ()

HSP 1 Score: 59.3066 bits (142), Expect = 1.096e-9
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:   63 IEAAGIDYECPEIVGNLHPAPKKIKFED 146
            IEAAGIDYECPEIVGN+ PAPKKIKFED
Sbjct:  184 IEAAGIDYECPEIVGNIQPAPKKIKFED 211
[Close]
BLAST of EX570397 vs. Soybean peptides
Match: Glyma02g29190.1|PACid:16248762 ()

HSP 1 Score: 59.3066 bits (142), Expect = 1.096e-9
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:   63 IEAAGIDYECPEIVGNLHPAPKKIKFED 146
            IEAAGIDYECPEIVGN+ PAPKKIKFED
Sbjct:  184 IEAAGIDYECPEIVGNIQPAPKKIKFED 211
[Close]
BLAST of EX570397 vs. Medicago proteins
Match: IMGA|Medtr1g108290.1 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like (AHRD V1 ***- Q6GL69); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait chr01_pseudomolecule_IMGAG_V3.5 31820720-31824128 E EGN_Mt100125 20100825)

HSP 1 Score: 57.3806 bits (137), Expect = 2.570e-9
Identity = 29/48 (60.42%), Postives = 29/48 (60.42%), Query Frame = 3 
Query:    3 EEHXXXXXXXXXXXXXXXXXIEAAGIDYECPEIVGNLHPAPKKIKFED 146
            EEH                 IEAAGIDYECPEIVGNL  APKKIKFED
Sbjct:  166 EEHKKLVDRVMKRDKKRRKKIEAAGIDYECPEIVGNLQSAPKKIKFED 213
The following BLAST results are available for this feature:
BLAST of EX570397 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G04600.14.608e-747.92| Symbols: | RNA-binding (RRM/RBD/RNP motifs) fam... [more]
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BLAST of EX570397 vs. TAIR peptide
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G04600.14.608e-747.92| Symbols: | RNA-binding (RRM/RBD/RNP motifs) fam... [more]
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BLAST of EX570397 vs. Lotus protein
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Lotus proteins)
Total hits: 1
Match NameE-valueIdentityDescription
chr6.CM0778.290.r2.d3.955e-956.25+ phase: 2 /pseudo/partial[more]
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BLAST of EX570397 vs. Soybean peptides
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Soybean peptides)
Total hits: 4
Match NameE-valueIdentityDescription
Glyma09g17080.2|PACid:162758188.390e-1060.42[more]
Glyma09g17080.1|PACid:162758178.390e-1060.42[more]
Glyma02g29190.2|PACid:162487631.096e-992.86[more]
Glyma02g29190.1|PACid:162487621.096e-992.86[more]
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BLAST of EX570397 vs. Medicago proteins
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins)
Total hits: 1
Match NameE-valueIdentityDescription
IMGA|Medtr1g108290.12.570e-960.42MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
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Properties
Property NameValue
Singlet in analysisPisum sativum unigene v2
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX570397 ID=EX570397; Name=EX570397; organism=Pisum sativum; type=EST; length=399bp
TGGAAGAACACAAAAAGTTGGTTGATAGGGTTGTGAAACGTGACAAAAAA
CGCCGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGTCCCGAGAT
TGTGGGTAACCTCCATCCTGCTCCAAAGAAGATTAAGTTCGAAGACTAAG
TAGGTAACATGTTTCCTCTTTAAAAGTTCGACCATTCACCTCGGTGAAGA
TAGTGGATCCTCTCATGTTTACATTTTGCATCTATTGCTCTAATTTGATT
TTAAGTAGTGAACTCTTTTCAATTTCCATTAGTGTATGTTGAGAGTATCA
AACTATCAAACATAAAATGGTTGAGTAGAGTTTTAATTGGAGGATCCATT
TTCCTTCGATGTATGTTGTAATTGATTTTTCTCTAGATGTATTTTTGCT
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