FG536486

EST Overview


Name	FG536486
Unique Name	FG536486
Type	EST
Organism	Pisum sativum (pea)
Sequence length	559

Libraries


Library Name	Type
LIBEST_023215 MeriZ Pisum sativum Shoot apical meristem ESTs	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of FG536486 vs. TrEMBL
Match: D7TCU2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_80.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036119001 PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.557e-42
Identity = 89/141 (63.12%), Postives = 96/141 (68.09%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPTYPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            D LK+LFEHHGKITKV LPPAK+GQEKSR GFVHFA+RS AMKALKNTEKYEIDGQ+LECSLAKPQADQKS G SNS  S +L +YPP +GY                 GFAQPL                LLPDGRI YV
Sbjct:  243 DQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSVGGSNSQKSGLLSSYPPRVGYGFVGGAYGALGAGYGTAGFAQPLIYGRGPTPAGMAMMPMLLPDGRIGYV 383

[Close]

BLAST of FG536486 vs. TrEMBL
Match: B9SCU6_RICCO (Nucleolar phosphoprotein, putative OS=Ricinus communis GN=RCOM_1281690 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.854e-38
Identity = 84/141 (59.57%), Postives = 94/141 (66.67%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPTYPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            D LK+LFEHHGKITKV LPPAK GQEK+R GFVHFA+RS AMKALKNTE+YE+DGQ++ECSLAKPQADQKS GVSN  N  +LP+YPP  GY +                 AQPL                LLPDGRI YV
Sbjct:  300 DQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFVHFAERSSAMKALKNTERYELDGQVVECSLAKPQADQKSVGVSNLQNPGLLPSYPPGGGYGLIGGAFGALGAGYG--AVAQPLIYGRGPTPAGMAMMPMLLPDGRIGYV 438

[Close]

BLAST of FG536486 vs. TrEMBL
Match: B9HC85_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_717692 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.854e-38
Identity = 81/141 (57.45%), Postives = 95/141 (67.38%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPTYPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            D L++LFEHHGK+TKV LPPAK G EKSR+GFVHFA+RS AMKALKNTEKY+IDGQ+L+CSLAKPQAD KSSG  NS  S+   ++PP +GYS+               GFAQP+                LLPDGRI YV
Sbjct:  256 DRLRQLFEHHGKVTKVVLPPAKPGHEKSRFGFVHFAERSSAMKALKNTEKYKIDGQVLDCSLAKPQADLKSSGGPNSQKSSPHSSFPPRVGYSLVGSSYGALGAGFGAAGFAQPVIYGRGPTPAGMSMMPMLLPDGRIGYV 396

[Close]

BLAST of FG536486 vs. TrEMBL
Match: B9SWF3_RICCO (Nucleolar phosphoprotein, putative OS=Ricinus communis GN=RCOM_0292800 PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.358e-38
Identity = 82/141 (58.16%), Postives = 94/141 (66.67%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPTYPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            D L++LFE HGK+TKV +PPAKAG E+SR+ FVHFA+RS AMKALKNTEKYEIDGQ+LECSLAKPQADQKSSG SN   S + PT+PP LGY +                FAQP+                LLPDGRI YV
Sbjct:  298 DRLRQLFERHGKVTKVVVPPAKAGHERSRFAFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSSGGSNLQKSVLHPTFPPRLGYGL-VGGTYGALGAGYGASFAQPMIYGRGPTPAGISMMPMLLPDGRIGYV 437

[Close]

BLAST of FG536486 vs. TrEMBL
Match: D7TJ78_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033857001 PE=4 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.416e-37
Identity = 84/141 (59.57%), Postives = 93/141 (65.96%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPTYPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            D L+ELF  HGKITKV +PPAKAGQE  R+GFVHFA+RS AMKALKNTEKYEIDG IL CSLAKPQAD+K SG SNS  SA+LP+YPP +GY +               GF QPL                LLPDGRI YV
Sbjct:  280 DQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSAMKALKNTEKYEIDGHILGCSLAKPQADKKFSGGSNSQKSALLPSYPPWVGYGL---LGGAPGAGYGAAGFGQPLTYGRGLTSAGTAMMPMLLPDGRIGYV 417

[Close]

BLAST of FG536486 vs. TrEMBL
Match: B9HQ12_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1085981 PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.199e-36
Identity = 79/142 (55.63%), Postives = 96/142 (67.61%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPTYPPPLGYSMXXXXXXXXXXXXXXTGFA-QPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            D LK+LFE HGKITKV LPPAK+GQEK+R GFVHFA+RS AMKALK+TEKYE+DGQ++EC+LAKPQ++QK++G SN  N+ +LP YPP +GY M               GFA QPL                LLPDG+  YV
Sbjct:  296 DQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELDGQLVECALAKPQSEQKAAGGSNLQNTGLLPGYPPGVGYGMMGNAYGALGAGYVTAGFAQQPLIYGSGPSPAGMAMMPMLLPDGQFGYV 437

[Close]

BLAST of FG536486 vs. TrEMBL
Match: B9MYW2_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_293793 PE=4 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.045e-36
Identity = 77/141 (54.61%), Postives = 93/141 (65.96%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPTYPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            D LK+LFE HGKITKV LPPAK+GQEK+R GFVHFA+RS AMKALK+TEKYE++GQ +EC+LAKPQ++QK +G SN   + +LP YPP +GY M              TGF QPL                LLPDG+  YV
Sbjct:  228 DQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELNGQSVECALAKPQSEQKPAGGSNLQRAGLLPAYPPGVGYGMMGSAYGALGAGYVATGFTQPLIYGSGPAPAGMAMMPMLLPDGQFGYV 368

[Close]

BLAST of FG536486 vs. TrEMBL
Match: B9IIU5_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_256575 PE=4 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.489e-36
Identity = 79/146 (54.11%), Postives = 91/146 (62.33%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPTYPPPLGYSM-----XXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            D L++LFEHHGK+TKV LPPAK G EKSR+GFVHFA+RS AMKALKNTEKYEIDG +L+CSLAKP  DQK SG  NS NS++   +PP LGY +                    GF QP+                LLPDGRI YV
Sbjct:  281 DGLRQLFEHHGKVTKVVLPPAKPGHEKSRFGFVHFAERSSAMKALKNTEKYEIDGHVLDCSLAKPHTDQKPSGGPNSQNSSLYSNFPPQLGYGLAGGTYGGFGAGFGGAGFGAAGFTQPVIYGRGPTPAGMAMMPMLLPDGRIGYV 426

[Close]

BLAST of FG536486 vs. TrEMBL
Match: Q2HS59_MEDTR (RNA-binding region RNP-1 (RNA recognition motif) OS=Medicago truncatula GN=MtrDRAFT_AC157373g20v2 PE=4 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.893e-32
Identity = 77/141 (54.61%), Postives = 85/141 (60.28%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPTYPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            + LK+LFEHHGKITKV LPP K GQEK+R GFVHFA+RS AMKALKNTEKY +DGQILECSLAK QAD K+  VSN      LP YPP +GY +               G AQP                 LL D RI YV
Sbjct:  535 EQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPKAV-VSNIQTQGSLPRYPPHVGYGLDGNPYGVLGAGYGAPGLAQPFTYGLGQTPGGIAMMPKLLVDRRIRYV 674

[Close]

BLAST of FG536486 vs. TrEMBL
Match: D7LU96_ARALY (RNA recognition motif-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485637 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.379e-31
Identity = 71/143 (49.65%), Postives = 89/143 (62.24%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSG--VSNSHNSAILPTYPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            + LK LFEHHGKI KV +PPAK G+E SRYGFVH+A+R+  M+ALKNTE+YEIDG +L+C+LAKPQADQK++   V N   S + P YPP L Y M              + ++QPL                +LPDGRI YV
Sbjct:  281 ERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKANANTVQNVQKSQLQPNYPPLLSYGM-APSPFGALGGFGASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYV 422

[Close]

BLAST of FG536486 vs. TAIR peptide
Match: AT3G52660.2 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:19522598-19524735 FORWARD LENGTH=471)

HSP 1 Score: 137.502 bits (345), Expect = 4.622e-33
Identity = 71/143 (49.65%), Postives = 89/143 (62.24%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQK--SSGVSNSHNSAILPTYPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            + LK LFEHHGKI KV +PPAK G+E SRYGFVH+A+R+  M+ALKNTE+YEIDG +L+C+LAKPQADQK  ++ V N   S + P YPP L Y M              + ++QPL                +LPDGRI YV
Sbjct:  282 ERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSYGM-APSPFGALGGFGASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYV 423

[Close]

BLAST of FG536486 vs. TAIR peptide
Match: AT3G52660.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:19522598-19524735 FORWARD LENGTH=471)

HSP 1 Score: 137.502 bits (345), Expect = 4.622e-33
Identity = 71/143 (49.65%), Postives = 89/143 (62.24%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQK--SSGVSNSHNSAILPTYPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            + LK LFEHHGKI KV +PPAK G+E SRYGFVH+A+R+  M+ALKNTE+YEIDG +L+C+LAKPQADQK  ++ V N   S + P YPP L Y M              + ++QPL                +LPDGRI YV
Sbjct:  282 ERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSYGM-APSPFGALGGFGASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYV 423

[Close]

BLAST of FG536486 vs. TAIR peptide
Match: AT4G00830.4 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352782-354965 FORWARD LENGTH=495)

HSP 1 Score: 102.064 bits (253), Expect = 2.152e-22
Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPT--YPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            + LKELF+ HG++TK+  PP K G  K  +GFVH+A+RS A+KA+K+TE+YE++GQ LE  LAKPQA++K    S S+ +A  P     P  G                   F+QP+                LLPDGR+ YV
Sbjct:  306 EQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYV 446

[Close]

BLAST of FG536486 vs. TAIR peptide
Match: AT4G00830.3 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352842-354965 FORWARD LENGTH=467)

HSP 1 Score: 102.064 bits (253), Expect = 2.152e-22
Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPT--YPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            + LKELF+ HG++TK+  PP K G  K  +GFVH+A+RS A+KA+K+TE+YE++GQ LE  LAKPQA++K    S S+ +A  P     P  G                   F+QP+                LLPDGR+ YV
Sbjct:  278 EQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYV 418

[Close]

BLAST of FG536486 vs. TAIR peptide
Match: AT4G00830.2 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352782-354965 FORWARD LENGTH=495)

HSP 1 Score: 102.064 bits (253), Expect = 2.152e-22
Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPT--YPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            + LKELF+ HG++TK+  PP K G  K  +GFVH+A+RS A+KA+K+TE+YE++GQ LE  LAKPQA++K    S S+ +A  P     P  G                   F+QP+                LLPDGR+ YV
Sbjct:  306 EQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYV 446

[Close]

BLAST of FG536486 vs. TAIR peptide
Match: AT4G00830.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352782-354965 FORWARD LENGTH=495)

HSP 1 Score: 102.064 bits (253), Expect = 2.152e-22
Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQILECSLAKPQADQKSSGVSNSHNSAILPT--YPPPLGYSMXXXXXXXXXXXXXXTGFAQPLXXXXXXXXXXXXXXXXLLPDGRIAYV 423
            + LKELF+ HG++TK+  PP K G  K  +GFVH+A+RS A+KA+K+TE+YE++GQ LE  LAKPQA++K    S S+ +A  P     P  G                   F+QP+                LLPDGR+ YV
Sbjct:  306 EQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYV 446

[Close]

BLAST of FG536486 vs. TAIR peptide
Match: AT5G28390.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:10342024-10342997 REVERSE LENGTH=180)

HSP 1 Score: 86.6557 bits (213), Expect = 9.356e-18
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1

Query:    1 DHLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEID 162
            + LK LFEHHGKI KV +PPAK G+E SRYGFVH+A+R+  M+ALKNTE+YEID
Sbjct:   48 ERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEID 101

The following BLAST results are available for this feature:

BLAST of FG536486 vs. TrEMBL
BLAST of FG536486 vs. TAIR peptide

BLAST of FG536486 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7TCU2_VITVI	5.557e-42	63.12	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9SCU6_RICCO	2.854e-38	59.57	Nucleolar phosphoprotein, putative OS=Ricinus comm...	[more]
B9HC85_POPTR	2.854e-38	57.45	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9SWF3_RICCO	6.358e-38	58.16	Nucleolar phosphoprotein, putative OS=Ricinus comm...	[more]
D7TJ78_VITVI	1.416e-37	59.57	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9HQ12_POPTR	1.199e-36	55.63	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9MYW2_POPTR	2.045e-36	54.61	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B9IIU5_POPTR	3.489e-36	54.11	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
Q2HS59_MEDTR	8.893e-32	54.61	RNA-binding region RNP-1 (RNA recognition motif) O...	[more]
D7LU96_ARALY	3.379e-31	49.65	RNA recognition motif-containing protein OS=Arabid...	[more]

BLAST of FG536486 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 7


Match Name	E-value	Identity	Description
AT3G52660.2	4.622e-33	49.65	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT3G52660.1	4.622e-33	49.65	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT4G00830.4	2.152e-22	39.86	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT4G00830.3	2.152e-22	39.86	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT4G00830.2	2.152e-22	39.86	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT4G00830.1	2.152e-22	39.86	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT5G28390.1	9.356e-18	70.37	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 1..57 score: 5.7
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 1..65 score: 10
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 1..71 score: 9.6
None	No IPR available	PANTHER	PTHR10432	RNA-BINDING PROTEIN	coord: 3..115 score: 5.9
None	No IPR available	PANTHER	PTHR10432:SF41	NUCLEOLAR PHOSPHOPROTEIN	coord: 3..115 score: 5.9
None	No IPR available	SEG	seg	seg	coord: 95..108 score: NAcoord: 116..131 score: NAcoord: 142..159 score: NAcoord: 166..178 score
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 1..83 score: 3
None	No IPR available	SEG	seg	seg	coord: 34..52 score
None	No IPR available	SEG	seg	seg	coord: 43..50 score
None	No IPR available	SEG	seg	seg	coord: 3..15 score
None	No IPR available	SEG	seg	seg	coord: 9..19 score: NAcoord: 80..92 score
None	No IPR available	SEG	seg	seg	coord: 1..15 score: NAcoord: 50..63 score

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FG536486 ID=FG536486; Name=FG536486; organism=Pisum sativum; type=EST; length=559bp
GATCATCTGAAGGAGCTGTTTGAACATCATGGTAAGATCACAAAAGTAGC
TCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGCAGATATGGTTTTGTGC
ACTTTGCTGATAGATCATGTGCAATGAAGGCATTGAAGAACACAGAGAAG
TATGAGATTGATGGCCAAATTTTGGAATGCTCACTCGCTAAGCCACAGGC
AGATCAGAAGTCATCTGGTGTATCAAATTCACACAATTCAGCTATACTTC
CTACTTATCCACCTCCTCTTGGTTATAGTATGGTTGGAGGTGGATATGGT
GCTGTTGGTGCAGGATATGGTGCCACTGGCTTTGCACAGCCACTAATGTA
TGGTCCGGGAGCAACCCCTGCTGGCATGGCAATGATGCCAATGCTTTTAC
CAGATGGAAGGATTGCATATGTATTGCAACAACCAGGTTTACCGCAGGCA
GGCTTGCAACAGCCAGGTTTTCAACAGCATGCTCCTTCACCAGTATCTCG
ACATGGCAGGAGTGGTGGTGGTAGCTCAAGTGGTGAAAAACGCAATCACG
ATAATAACC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

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