FG537355

EST Overview
NameFG537355
Unique NameFG537355
TypeEST
OrganismPisum sativum (pea)
Sequence length558
Libraries
Library NameType
LIBEST_023215 MeriZ Pisum sativum Shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
BLAST of FG537355 vs. TrEMBL
Match: C6T7X1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.253e-54
Identity = 109/132 (82.58%), Postives = 119/132 (90.15%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNR--KVGSFDSTKPVDSLAKYLSERL 391
            K+NSRKQGELKERLKHSYSALK+EFR TFEK NSDVGELS+ EKNL YEQKASAWYQVTYHP+WVKK+LDLQ KSS++QEADS    VMLSFPWIAVDYLAR+KIR R  + G+FDSTKPVDSLAKYLSERL
Sbjct:  159 KYNSRKQGELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRCGNFDSTKPVDSLAKYLSERL 290          
BLAST of FG537355 vs. TrEMBL
Match: B9HA49_POPTR (Rna-dependent RNA polymerase OS=Populus trichocarpa GN=RDR906 PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.030e-40
Identity = 81/130 (62.31%), Postives = 105/130 (80.77%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNRKVGSFDSTKPVDSLAKYLSERL 391
            K +SRKQG+LKERLKHSY+ LKREFRQ FEK + D G+L D EKN++YE+KASAWYQVTYHP W++K+L+L       Q++D +  +VMLSF WIA DYLAR KIR+ ++G+ DS KPV+SLAKYL++R+
Sbjct: 1076 KGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLEL-------QDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198          
BLAST of FG537355 vs. TrEMBL
Match: B9IKW9_POPTR (Rna-dependent RNA polymerase OS=Populus trichocarpa GN=RDR905 PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.756e-40
Identity = 82/130 (63.08%), Postives = 104/130 (80.00%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNRKVGSFDSTKPVDSLAKYLSERL 391
            K++SRKQGELK+RLKHSY++LK+EFRQ FEK + +  +L DGEKN +YEQKASAWYQV YHP WVKK+L+L       Q+ D +  +VMLSF WIA DYLAR KIR+R+ G+ DS KPV+SLAKYL++R+
Sbjct: 1078 KYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLEL-------QDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200          
BLAST of FG537355 vs. TrEMBL
Match: Q9SG02_ARATH (Putative RNA-directed RNA polymerase; 73997-69985 OS=Arabidopsis thaliana GN=T9C5.95 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.942e-39
Identity = 81/130 (62.31%), Postives = 102/130 (78.46%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNRKVGSFDSTKPVDSLAKYLSERL 391
            K+ S+KQGELKERLKHSY++LK+EFR+ FE+   D   LS+ EKN++YE+KASAWY VTYHP+WVKK+L+L       Q+ D S    MLSF WIA DYLAR KIR+R++GS DS KPVDSLAK+L++RL
Sbjct: 1074 KYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLEL-------QDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196          
BLAST of FG537355 vs. TrEMBL
Match: Q9LKP0_ARATH (RNA-dependent RNA polymerase OS=Arabidopsis thaliana GN=SDE1 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.942e-39
Identity = 81/130 (62.31%), Postives = 102/130 (78.46%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNRKVGSFDSTKPVDSLAKYLSERL 391
            K+ S+KQGELKERLKHSY++LK+EFR+ FE+   D   LS+ EKN++YE+KASAWY VTYHP+WVKK+L+L       Q+ D S    MLSF WIA DYLAR KIR+R++GS DS KPVDSLAK+L++RL
Sbjct: 1074 KYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLEL-------QDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196          
BLAST of FG537355 vs. TrEMBL
Match: D7SUT9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00035851001 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.804e-38
Identity = 80/130 (61.54%), Postives = 101/130 (77.69%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNRKVGSFDSTKPVDSLAKYLSERL 391
            K+ SRKQGEL ERLKH+YS+LK+EFRQ FEK NSD  +L+D EKN +YEQKASAWYQVTYHP WVKK+L+LQ  + D+   +     VMLSF WI  DYLAR KIR +  G+ DS+KP++SLA++L +R+
Sbjct:  912 KYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQ--NPDEVFGE----RVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1035          
BLAST of FG537355 vs. TrEMBL
Match: D7LSJ5_ARALY (RNA-dependent RNA polymerase 6 OS=Arabidopsis lyrata subsp. lyrata GN=RDR6 PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.100e-37
Identity = 80/130 (61.54%), Postives = 102/130 (78.46%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNRKVGSFDSTKPVDSLAKYLSERL 391
            K+ S+KQ +LKERLKHSY++LK+EFR+ FE+   D  ELS+ EKN++YE+KASAWY VTYHPKWVKK+L+LQ    D  E  S    VMLSF WIA DYLA+ KIR+ ++G+ DS KPVDSLAK+L++RL
Sbjct: 1074 KYTSKKQCDLKERLKHSYNSLKKEFRKVFEETILDHEELSEEEKNILYEKKASAWYHVTYHPKWVKKSLELQ----DPDEPSS--HAVMLSFAWIAADYLAKIKIRSGEMGNIDSAKPVDSLAKFLAQRL 1197          
BLAST of FG537355 vs. TrEMBL
Match: B9RP51_RICCO (RNA-dependent RNA polymerase, putative OS=Ricinus communis GN=RCOM_0924060 PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.288e-37
Identity = 80/130 (61.54%), Postives = 98/130 (75.38%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNRKVGSFDSTKPVDSLAKYLSERL 391
            K NSRKQGELKERLK SY +LK+EFRQ FEK +SD  +L++ EKNL+YEQKASAWYQV YHPKWV K+++L       QE D++    MLSF WIA DYLAR KIR R     D++KPV+SL KYL++R+
Sbjct: 1081 KCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWVNKSMEL-------QEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLADRI 1203          
BLAST of FG537355 vs. TrEMBL
Match: D5FJ44_NICGU (RNA-dependent RNA polymerase 6 OS=Nicotiana glutinosa GN=RDR6 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.440e-34
Identity = 73/130 (56.15%), Postives = 96/130 (73.85%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNRKVGSFDSTKPVDSLAKYLSERL 391
            K++++KQGELKERLKH+Y+ L++EFR  FE+   D   L D EKN MYE+KASAWYQVTYHP WV ++L+LQI        D+    VMLSF WIA DYLAR KIR+R +   DSTKP++SL +YL++++
Sbjct: 1075 KYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQI-------PDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197          
BLAST of FG537355 vs. TrEMBL
Match: A9CRC9_TOBAC (RNA-dependent RNA polymerase 6 OS=Nicotiana tabacum GN=NtRDR6 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.881e-34
Identity = 72/130 (55.38%), Postives = 96/130 (73.85%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNRKVGSFDSTKPVDSLAKYLSERL 391
            K++++KQGELKERLKH+Y+ L++EFR  FE+ + D   L D EKN MYE+KASAWYQVTYHP WV ++L+LQ+        D+    VMLSF WIA DYLAR KIR+R++   DSTKP++SL +YL + +
Sbjct: 1075 KYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQL-------PDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197          
BLAST of FG537355 vs. SwissProt
Match: SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.761e-31
Identity = 70/130 (53.85%), Postives = 91/130 (70.00%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNRKVGSFDSTKPVDSLAKYLSERL 391
            K++S+KQG++K+RLK +YSAL++EF+ TFE   SD  E+ D EKNL+YE KASAWYQVTYHPKWV+K+    I   D +E  +S     LSF WI VDYLAR K+R       +  KPV+ LA Y+SER+
Sbjct: 1096 KNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRG--ILGPDGEEIPAS-----LSFAWIPVDYLARIKLRCHGKVRVEGQKPVERLAAYISERI 1218          
BLAST of FG537355 vs. TAIR peptide
Match: AT3G49500.1 (| Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196)

HSP 1 Score: 165.622 bits (418), Expect = 1.568e-41
Identity = 81/130 (62.31%), Postives = 102/130 (78.46%), Query Frame = 2
Query:    2 KHNSRKQGELKERLKHSYSALKREFRQTFEKPNSDVGELSDGEKNLMYEQKASAWYQVTYHPKWVKKTLDLQIKSSDDQEADSSLRNVMLSFPWIAVDYLARSKIRNRKVGSFDSTKPVDSLAKYLSERL 391
            K+ S+KQGELKERLKHSY++LK+EFR+ FE+   D   LS+ EKN++YE+KASAWY VTYHP+WVKK+L+L       Q+ D S    MLSF WIA DYLAR KIR+R++GS DS KPVDSLAK+L++RL
Sbjct: 1074 KYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLEL-------QDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196          
The following BLAST results are available for this feature:
BLAST of FG537355 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6T7X1_SOYBN1.253e-5482.58Putative uncharacterized protein OS=Glycine max PE... [more]
B9HA49_POPTR1.030e-4062.31Rna-dependent RNA polymerase OS=Populus trichocarp... [more]
B9IKW9_POPTR1.756e-4063.08Rna-dependent RNA polymerase OS=Populus trichocarp... [more]
Q9SG02_ARATH1.942e-3962.31Putative RNA-directed RNA polymerase; 73997-69985 ... [more]
Q9LKP0_ARATH1.942e-3962.31RNA-dependent RNA polymerase OS=Arabidopsis thalia... [more]
D7SUT9_VITVI2.804e-3861.54Whole genome shotgun sequence of line PN40024, sca... [more]
D7LSJ5_ARALY3.100e-3761.54RNA-dependent RNA polymerase 6 OS=Arabidopsis lyra... [more]
B9RP51_RICCO5.288e-3761.54RNA-dependent RNA polymerase, putative OS=Ricinus ... [more]
D5FJ44_NICGU1.440e-3456.15RNA-dependent RNA polymerase 6 OS=Nicotiana glutin... [more]
A9CRC9_TOBAC1.881e-3455.38RNA-dependent RNA polymerase 6 OS=Nicotiana tabacu... [more]
back to top
BLAST of FG537355 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
SHL2_ORYSJ2.761e-3153.85Probable RNA-dependent RNA polymerase SHL2 OS=Oryz... [more]
back to top
BLAST of FG537355 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G49500.11.568e-4162.31| Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA po... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 35..43
score
NoneNo IPR availableSEGsegsegcoord: 41..56
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>FG537355 ID=FG537355; Name=FG537355; organism=Pisum sativum; type=EST; length=558bp
TAAACACAACAGTAGGAAGCAAGGAGAACTTAAGGAGAGGCTGAAGCACT
CATACAGTGCTCTCAAAAGAGAATTTAGGCAAACCTTTGAGAAACCGAAT
TCAGATGTTGGAGAGTTAAGTGATGGAGAAAAAAATTTGATGTATGAACA
GAAAGCTTCTGCCTGGTATCAGGTGACATATCATCCTAAATGGGTAAAAA
AAACCCTGGATTTGCAAATTAAATCCTCAGATGATCAAGAGGCAGATAGT
AGTTTGAGGAACGTGATGTTGAGTTTTCCTTGGATTGCTGTTGATTACCT
TGCTCGCTCAAAGATAAGGAATCGGAAAGTTGGAAGTTTTGATTCAACCA
AGCCGGTTGATTCGTTGGCGAAATATCTATCTGAAAGGTTATAGTTCTAT
GTCGCTCTATCATGGCTACAAGGCCGCTCTGCCACCATCAATAGGTTTTC
CTTTTGGCATTCAGTTACTTTAGTTGTAACGTGTTATATATATTTTTACT
TACATTACCTGCATTTGCTTTTGAGAGTTAAGATTGTAACAAGTGTTCTT
GATACTTT
back to top