EX568974

EST Overview
NameEX568974
Unique NameEX568974
TypeEST
OrganismPisum sativum (pea)
Sequence length595
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
BLAST of EX568974 vs. TrEMBL
Match: D7U0M3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00017123001 PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.070e-44
Identity = 94/150 (62.67%), Postives = 111/150 (74.00%), Query Frame = 3
Query:    6 ISKSE-----TLQXXXXXXXXXXXXXXFNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTCAT---EGKTGLSTFALKFRDGSIVEDFKAAITAHKGEASTTVKTPENSPKAS 431
            ISKSE     +LQ              F ADSVLFEF +GGWKERGKGE+KVNV+    +KAR++MR+KGNYRLILNA LYP+MKLTNMEK+G+TF C     EGK GLSTFALKF+D SIVE+F  A+TAHKG+ +T + TPENSPKAS
Sbjct:  155 ISKSEGSGFPSLQEVPVETGEENEKAVFTADSVLFEFFDGGWKERGKGELKVNVSRDGVEKARLVMRAKGNYRLILNASLYPDMKLTNMEKRGITFACMNSIGEGKDGLSTFALKFKDASIVEEFSVAVTAHKGKTATVMNTPENSPKAS 304          
BLAST of EX568974 vs. TrEMBL
Match: A5AWP1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004512 PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.070e-44
Identity = 94/150 (62.67%), Postives = 111/150 (74.00%), Query Frame = 3
Query:    6 ISKSE-----TLQXXXXXXXXXXXXXXFNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTCAT---EGKTGLSTFALKFRDGSIVEDFKAAITAHKGEASTTVKTPENSPKAS 431
            ISKSE     +LQ              F ADSVLFEF +GGWKERGKGE+KVNV+    +KAR++MR+KGNYRLILNA LYP+MKLTNMEK+G+TF C     EGK GLSTFALKF+D SIVE+F  A+TAHKG+ +T + TPENSPKAS
Sbjct:  298 ISKSEGSGFPSLQEVPVETGEENEKAVFTADSVLFEFFDGGWKERGKGELKVNVSRDGVEKARLVMRAKGNYRLILNASLYPDMKLTNMEKRGITFACMNSIGEGKDGLSTFALKFKDASIVEEFSVAVTAHKGKTATVMNTPENSPKAS 447          
BLAST of EX568974 vs. TrEMBL
Match: B9SQB9_RICCO (Ran-binding protein, putative OS=Ricinus communis GN=RCOM_0980270 PE=4 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.068e-44
Identity = 86/123 (69.92%), Postives = 106/123 (86.18%), Query Frame = 3
Query:   72 FNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTC---ATEGKTGLSTFALKFRDGSIVEDFKAAITAHKGEASTTVKTPENSPKAS 431
            F+ADSVLFEF+ GGWKERGKGE+KVNV++   ++AR+LMR++GNYRLILNA LYP+MKLTNMEK+GVTF C    +E K GLSTFALKF+DGS+VEDF+AA+ AHK +A+  +KTPENSPK S
Sbjct:  316 FSADSVLFEFLNGGWKERGKGELKVNVSTTGTERARLLMRARGNYRLILNASLYPDMKLTNMEKRGVTFACMNSTSENKDGLSTFALKFKDGSVVEDFRAAVAAHKDKAAIVLKTPENSPKGS 438          
BLAST of EX568974 vs. TrEMBL
Match: A9PGM0_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.917e-42
Identity = 84/123 (68.29%), Postives = 105/123 (85.37%), Query Frame = 3
Query:   72 FNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTCAT---EGKTGLSTFALKFRDGSIVEDFKAAITAHKGEASTTVKTPENSPKAS 431
            F+ADSVLFEF++GGWKERGKGE+KVNV+S   ++AR+LMR++G++RLILNA LYP+MKL NM+K+G+TF C     EGK  LSTFALKF+DGSIVE+F AA+TAHK +A   +KTPENSPKAS
Sbjct:  392 FSADSVLFEFLDGGWKERGKGELKVNVSSAGAERARLLMRARGHFRLILNASLYPDMKLANMDKRGITFACMNSIGEGKDSLSTFALKFKDGSIVEEFCAAVTAHKDKAPAAMKTPENSPKAS 514          
BLAST of EX568974 vs. TrEMBL
Match: B9GWR6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1073468 PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.498e-42
Identity = 83/123 (67.48%), Postives = 105/123 (85.37%), Query Frame = 3
Query:   72 FNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTCAT---EGKTGLSTFALKFRDGSIVEDFKAAITAHKGEASTTVKTPENSPKAS 431
            F+ADSVLFEF++GGWKERGKGE+KVNV++   ++AR+LMR++G++RLILNA LYP+MKL NM+K+G+TF C     EGK  LSTFALKF+DGSIVE+F AA+TAHK +A   +KTPENSPKAS
Sbjct:  312 FSADSVLFEFLDGGWKERGKGELKVNVSAAGAERARLLMRARGHFRLILNASLYPDMKLANMDKRGITFACMNSIGEGKDSLSTFALKFKDGSIVEEFCAAVTAHKDKAPAAMKTPENSPKAS 434          
BLAST of EX568974 vs. TrEMBL
Match: B9GEK5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_797471 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.212e-41
Identity = 79/123 (64.23%), Postives = 105/123 (85.37%), Query Frame = 3
Query:   72 FNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTCAT---EGKTGLSTFALKFRDGSIVEDFKAAITAHKGEASTTVKTPENSPKAS 431
            F+ADSV+FEF++GGWKERGKGE++VNV++   ++AR+LMR++GN+RLILNA +YP+MKLTNM+K+G+TF C     EGK  LSTFALKF+D SIVE+F+ A+TAH+ +A   +KTPENSPKAS
Sbjct:  345 FSADSVVFEFLDGGWKERGKGELRVNVSTTGAERARLLMRARGNFRLILNANIYPDMKLTNMDKRGITFACMNSIGEGKDSLSTFALKFKDSSIVEEFRTAVTAHRDKAPVALKTPENSPKAS 467          
BLAST of EX568974 vs. TrEMBL
Match: B8LNN8_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.384e-41
Identity = 80/123 (65.04%), Postives = 102/123 (82.93%), Query Frame = 3
Query:   72 FNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTC---ATEGKTGLSTFALKFRDGSIVEDFKAAITAHKGEASTTVKTPENSPKAS 431
            F AD+ LFE++ GGWKERGKGE+KVNV++    KAR++MRSKGNYRL+LNA L+P+MKLT+M+K+G++F C   A+E K GLSTFALKFRD S+VE+F+ A+ AHKG  S  +KTPENSPKAS
Sbjct:  345 FTADAALFEYISGGWKERGKGELKVNVSATETGKARLVMRSKGNYRLVLNANLFPDMKLTSMDKRGISFACMNSASESKAGLSTFALKFRDSSMVEEFQRAVEAHKGRLSGNLKTPENSPKAS 467          
BLAST of EX568974 vs. TrEMBL
Match: D7L4Z5_ARALY (Ran-binding protein 1 domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479051 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.601e-40
Identity = 83/128 (64.84%), Postives = 102/128 (79.69%), Query Frame = 3
Query:   72 FNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTC---ATEGKTGLSTFALKFRDGSIVEDFKAAITAHK------GEASTTVKTPENSPKA 428
            F ADSV+FE++EGGWKERGKGE+KVN+T+   +KAR++MRSKGNYRLILNA LYPEMKL NM+KKG+TF C    +E K GLSTFALKF+D ++VE+F+A I AHK       EA+  +KTPENSP A
Sbjct:  340 FTADSVMFEYLEGGWKERGKGELKVNITTTENRKARLVMRSKGNYRLILNASLYPEMKLANMDKKGITFACVNSGSEAKDGLSTFALKFKDPAVVEEFRAVIEAHKDSKPAVAEAAAPLKTPENSPSA 467          
BLAST of EX568974 vs. TrEMBL
Match: Q9C829_ARATH (At1g52380/F19K6_4 OS=Arabidopsis thaliana GN=At1g52380 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.163e-37
Identity = 80/132 (60.61%), Postives = 104/132 (78.79%), Query Frame = 3
Query:   72 FNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTC---ATEGKTGLSTFALKFRDGSIVEDFKAAITAHKG---------EASTTVKTPENSPKAS 431
            F+ADS++FE+++GGWKERGKGE+KVNV+S  + KAR++MR+KGNYRLILNA LYPEMKL NM+KKG+TF C    +EGK GLSTFALKF+D +IVE+F+ AI  HK          +++  +KTPENSP A+
Sbjct:  308 FSADSIMFEYLDGGWKERGKGELKVNVSSN-DGKARLVMRAKGNYRLILNASLYPEMKLANMDKKGITFACVNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKSALPLKTPENSPTAT 438          
BLAST of EX568974 vs. TrEMBL
Match: Q8L6Y2_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.163e-37
Identity = 80/132 (60.61%), Postives = 104/132 (78.79%), Query Frame = 3
Query:   72 FNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTC---ATEGKTGLSTFALKFRDGSIVEDFKAAITAHKG---------EASTTVKTPENSPKAS 431
            F+ADS++FE+++GGWKERGKGE+KVNV+S  + KAR++MR+KGNYRLILNA LYPEMKL NM+KKG+TF C    +EGK GLSTFALKF+D +IVE+F+ AI  HK          +++  +KTPENSP A+
Sbjct:  145 FSADSIMFEYLDGGWKERGKGELKVNVSSN-DGKARLVMRAKGNYRLILNASLYPEMKLANMDKKGITFACVNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKSALPLKTPENSPTAT 275          
BLAST of EX568974 vs. SwissProt
Match: RNB3L_MOUSE (Ran-binding protein 3-like OS=Mus musculus GN=Ranbp3l PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.431e-7
Identity = 27/87 (31.03%), Postives = 50/87 (57.47%), Query Frame = 3
Query:   75 NADSVLFEFVEGGWKERGKGEVKVNVTSGTE---KKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTCATEGKTGLSTFALK 326
            N    +F      W ERG+G +++N T+G E    ++R++MR++G+ RL+LN+RL+ +MK+    +K +  T       G+  F ++
Sbjct:  328 NCKIFVFNKATESWSERGQGILRLNDTAGRECGTLQSRLIMRNQGSLRLVLNSRLWAQMKIQRASQKNLRITATDLEDDGIKIFLIQ 414          
BLAST of EX568974 vs. TAIR peptide
Match: AT1G52380.1 (| Symbols: | NUP50 (Nucleoporin 50 kDa) protein | chr1:19509979-19511301 FORWARD LENGTH=440)

HSP 1 Score: 159.073 bits (401), Expect = 1.639e-39
Identity = 80/132 (60.61%), Postives = 104/132 (78.79%), Query Frame = 3
Query:   72 FNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTC---ATEGKTGLSTFALKFRDGSIVEDFKAAITAHKG---------EASTTVKTPENSPKAS 431
            F+ADS++FE+++GGWKERGKGE+KVNV+S  + KAR++MR+KGNYRLILNA LYPEMKL NM+KKG+TF C    +EGK GLSTFALKF+D +IVE+F+ AI  HK          +++  +KTPENSP A+
Sbjct:  308 FSADSIMFEYLDGGWKERGKGELKVNVSSN-DGKARLVMRAKGNYRLILNASLYPEMKLANMDKKGITFACVNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKSALPLKTPENSPTAT 438          
BLAST of EX568974 vs. TAIR peptide
Match: AT3G15970.1 (| Symbols: | NUP50 (Nucleoporin 50 kDa) protein | chr3:5408982-5410379 REVERSE LENGTH=465)

HSP 1 Score: 158.303 bits (399), Expect = 2.796e-39
Identity = 77/128 (60.16%), Postives = 98/128 (76.56%), Query Frame = 3
Query:   72 FNADSVLFEFVEGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFTC---ATEGKTGLSTFALKFRDGSIVEDFKAAITAHK------GEASTTVKTPENSPKA 428
            F ADSV+FE++EGGWKERGKGE+KVN+++   +KAR++MRSKGNYRL LNA LYPEMKL  M+KKG+TF C    ++ K GLST ALKF+D ++VE+F+A I  HK       EA+  +KTPENSP A
Sbjct:  335 FTADSVMFEYLEGGWKERGKGELKVNISTTENRKARLVMRSKGNYRLTLNASLYPEMKLAKMDKKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIEEHKDSKPSVAEAAAPLKTPENSPSA 462          
The following BLAST results are available for this feature:
BLAST of EX568974 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7U0M3_VITVI4.070e-4462.67Whole genome shotgun sequence of line PN40024, sca... [more]
A5AWP1_VITVI4.070e-4462.67Putative uncharacterized protein OS=Vitis vinifera... [more]
B9SQB9_RICCO9.068e-4469.92Ran-binding protein, putative OS=Ricinus communis ... [more]
A9PGM0_POPTR2.917e-4268.29Putative uncharacterized protein OS=Populus tricho... [more]
B9GWR6_POPTR6.498e-4267.48Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9GEK5_POPTR4.212e-4164.23Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B8LNN8_PICSI9.384e-4165.04Putative uncharacterized protein OS=Picea sitchens... [more]
D7L4Z5_ARALY1.601e-4064.84Ran-binding protein 1 domain-containing protein OS... [more]
Q9C829_ARATH2.163e-3760.61At1g52380/F19K6_4 OS=Arabidopsis thaliana GN=At1g5... [more]
Q8L6Y2_ARATH2.163e-3760.61Putative uncharacterized protein OS=Arabidopsis th... [more]
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BLAST of EX568974 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
RNB3L_MOUSE2.431e-731.03Ran-binding protein 3-like OS=Mus musculus GN=Ranb... [more]
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BLAST of EX568974 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G52380.11.639e-3960.61| Symbols: | NUP50 (Nucleoporin 50 kDa) protein |... [more]
AT3G15970.12.796e-3960.16| Symbols: | NUP50 (Nucleoporin 50 kDa) protein |... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000156Ran binding protein 1PFAMPF00638Ran_BP1coord: 13..123
score: 7.8
IPR000156Ran binding protein 1SMARTSM00160no descriptioncoord: 5..125
score: 5.6
IPR000156Ran binding protein 1PROFILEPS50196RANBD1coord: 1..122
score: 16
IPR011993Pleckstrin homology-typeGENE3D2.30.29.30no descriptioncoord: 6..126
score: 2.1
NoneNo IPR availablePANTHERPTHR23138RAN BINDING PROTEINcoord: 1..139
score: 7.9
NoneNo IPR availablePANTHERPTHR23138:SF4RAN-BINDING PROTEIN 3coord: 1..139
score: 7.9
NoneNo IPR availableSEGsegsegcoord: 10..23
score
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 2..134
score: 1.5
NoneNo IPR availableSEGsegsegcoord: 19..31
score
NoneNo IPR availableSEGsegsegcoord: 18..34
score: NAcoord: 45..62
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX568974 ID=EX568974; Name=EX568974; organism=Pisum sativum; type=EST; length=595bp
CTGCTATTTCCAAGAGTGAAACACTGCAGGAAGTGGTCGTTGAAACCGGT
GAAGAAAATGAGGAAGTAGTTTTTAATGCAGATTCAGTGTTGTTTGAATT
TGTAGAGGGAGGTTGGAAGGAACGCGGAAAAGGAGAGGTGAAGGTGAATG
TCACAAGTGGAACAGAAAAGAAGGCCAGAGTTCTTATGAGGTCTAAGGGA
AATTACAGATTGATTTTAAATGCGCGTCTTTACCCTGAAATGAAGCTCAC
AAATATGGAGAAAAAGGGTGTGACCTTTACCTGTGCAACTGAAGGGAAAA
CTGGTCTTTCGACATTTGCATTGAAGTTCAGAGATGGGTCCATAGTGGAG
GATTTTAAGGCTGCTATTACTGCACATAAGGGTGAGGCATCTACAACTGT
GAAGACACCAGAAAATTCTCCCAAGGCTTCTGGTGTTTGAGCTATATATC
CCACACTCACTCTTATACTCAATTTTCTCACAAACTCAGTTTCCTTAGCT
GCTATTTTGTTGTTGTTGTTCTTGTGTCTTTGTATGACAGTTAAATCATA
TTTGAGACTTGTTGTACTTCAATTTGAGTCAACCTGCTATGGTAG
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Biological Process
TermDefinition
GO:0046907intracellular transport
Vocabulary: INTERPRO
TermDefinition
IPR000156Ran_bind_dom
IPR011993PH-like_dom_sf