EX570852

EST Overview
NameEX570852
Unique NameEX570852
TypeEST
OrganismPisum sativum (pea)
Sequence length633
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
BLAST of EX570852 vs. TrEMBL
Match: D7TCZ9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_57.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00029990001 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.503e-45
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    4 STSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK*FGQ 366
            ++SL+EFSS+EGEVEGILKDIAERAGGKG FSYSRFFA+GLFRLLELANA EPTILEKLCAA NI+KRSVDRDLDVYRNLL+KLVQAKELLKE++D          E QKANEAITK  G+
Sbjct:  115 ASSLVEFSSKEGEVEGILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPTILEKLCAAFNISKRSVDRDLDVYRNLLTKLVQAKELLKEYVDREKKKREERVESQKANEAITKCLGE 235          
BLAST of EX570852 vs. TrEMBL
Match: C6T9W9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.348e-45
Identity = 97/120 (80.83%), Postives = 103/120 (85.83%), Query Frame = 1
Query:    7 TSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK*FGQ 366
            TSL+EFSS+EGE E ILKDIAERAGGKG+FSYSRFFAVGLFRL+ELANA EPTIL+KLCAALNINKRSVDRDLDVYR LLSKLVQAKELLKE+ID          EPQKANEAIT   GQ
Sbjct:  173 TSLVEFSSKEGEAERILKDIAERAGGKGEFSYSRFFAVGLFRLVELANATEPTILDKLCAALNINKRSVDRDLDVYRILLSKLVQAKELLKEYIDREKKKRDERVEPQKANEAITTCLGQ 292          
BLAST of EX570852 vs. TrEMBL
Match: C0P9Q2_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.465e-42
Identity = 87/116 (75.00%), Postives = 101/116 (87.07%), Query Frame = 1
Query:    7 TSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK 354
            +SL++FSSR+GE+E ILKDI+ERA GKG+FSYSRFFAVGLFRLLELANA EPT+L+KLCAALNINKRSVDRDLDVYRN+LSKLVQAKELLKE++D         +E  K NEA+TK
Sbjct:  159 SSLVDFSSRDGEIESILKDISERAKGKGNFSYSRFFAVGLFRLLELANATEPTVLDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVDREKKKREERSETPKPNEAVTK 274          
BLAST of EX570852 vs. TrEMBL
Match: B7FJN0_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.910e-42
Identity = 92/116 (79.31%), Postives = 99/116 (85.34%), Query Frame = 1
Query:    4 STSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAIT 351
            S SL+EFSSRE EVEG+LKDIA+RAG KG+FSYSRFFAVGLFRLLELANA EPTIL+KLCAALNI+KRSVDRDLDVYR LLSKLVQAKEL +EFID          EPQKAN AIT
Sbjct:  171 SISLVEFSSREREVEGVLKDIAKRAGEKGEFSYSRFFAVGLFRLLELANATEPTILDKLCAALNIDKRSVDRDLDVYRMLLSKLVQAKELQREFIDREKKKREERVEPQKANGAIT 286          
BLAST of EX570852 vs. TrEMBL
Match: Q0D5I3_ORYSJ (Os07g0558500 protein OS=Oryza sativa subsp. japonica GN=Os07g0558500 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.719e-42
Identity = 87/115 (75.65%), Postives = 100/115 (86.96%), Query Frame = 1
Query:   10 SLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK 354
            SL+EFSS++GE+E ILKDI+ERA GKG FSYSRFFAVGLFRLLELANA EPTIL+KLCAALNINKRSVDRDLDVYRN+LSKLVQAKELLKE+++         +E  K+NEA+TK
Sbjct:  163 SLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277          
BLAST of EX570852 vs. TrEMBL
Match: A2YML2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_26464 PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.719e-42
Identity = 87/115 (75.65%), Postives = 100/115 (86.96%), Query Frame = 1
Query:   10 SLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK 354
            SL+EFSS++GE+E ILKDI+ERA GKG FSYSRFFAVGLFRLLELANA EPTIL+KLCAALNINKRSVDRDLDVYRN+LSKLVQAKELLKE+++         +E  K+NEA+TK
Sbjct:  163 SLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277          
BLAST of EX570852 vs. TrEMBL
Match: B6UAI2_MAIZE (Chloroplast-localized Ptr ToxA-binding protein1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.933e-41
Identity = 85/116 (73.28%), Postives = 101/116 (87.07%), Query Frame = 1
Query:    7 TSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK 354
            +SL++FSSR+GE+E ILKDI+ERA GKG+FSYSRFFAVGLFRLLEL+NA EPTIL+KLCAALN++KRSVDRDLDVYRN+LSKLVQAKELLKE++D         +E  K NEA+TK
Sbjct:  159 SSLVDFSSRDGEIEAILKDISERAKGKGNFSYSRFFAVGLFRLLELSNATEPTILDKLCAALNVSKRSVDRDLDVYRNILSKLVQAKELLKEYVDREKKKREERSEAPKPNEAVTK 274          
BLAST of EX570852 vs. TrEMBL
Match: B4FEK7_MAIZE (Chloroplast-localized Ptr ToxA-binding protein1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.933e-41
Identity = 85/116 (73.28%), Postives = 101/116 (87.07%), Query Frame = 1
Query:    7 TSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK 354
            +SL++FSSR+GE+E ILKDI+ERA GKG+FSYSRFFAVGLFRLLEL+NA EPTIL+KLCAALN++KRSVDRDLDVYRN+LSKLVQAKELLKE++D         +E  K NEA+TK
Sbjct:  159 SSLVDFSSRDGEIEAILKDISERAKGKGNFSYSRFFAVGLFRLLELSNATEPTILDKLCAALNVSKRSVDRDLDVYRNILSKLVQAKELLKEYVDREKKKREERSEAPKPNEAVTK 274          
BLAST of EX570852 vs. TrEMBL
Match: C5XBJ0_SORBI (Putative uncharacterized protein Sb02g036270 OS=Sorghum bicolor GN=Sb02g036270 PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.831e-41
Identity = 84/117 (71.79%), Postives = 101/117 (86.32%), Query Frame = 1
Query:    4 STSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK 354
            ++SL++FSSR+GE+E ILKDI+ERA GKG+FSYSRFFAVGLFRLLELANA EPT+L+KLC ALN++KRSVDRDLDVYRN+LSKLVQAKELLKE++D         +E  K NEA+TK
Sbjct:  158 ASSLVDFSSRDGEIEAILKDISERAKGKGNFSYSRFFAVGLFRLLELANATEPTVLDKLCTALNVSKRSVDRDLDVYRNILSKLVQAKELLKEYVDREKKKREERSETPKPNEAVTK 274          
BLAST of EX570852 vs. TrEMBL
Match: B9RW80_RICCO (Protein THYLAKOID FORMATION1, chloroplast, putative OS=Ricinus communis GN=RCOM_1176570 PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.456e-40
Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    7 TSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK*FGQ 366
            +SL++FSS+EGEVEGILKDIAERAG  G FSYSRFFA+GLFRLLEL+N+ EPT+LEKLCAALNINKR VDRDLDVYRNLLSKLVQAKELLKE++D            QKANEA+    G+
Sbjct:  176 SSLVDFSSKEGEVEGILKDIAERAGN-GSFSYSRFFAIGLFRLLELSNSTEPTVLEKLCAALNINKRGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKQEERASSQKANEAVKSCLGE 294          
BLAST of EX570852 vs. SwissProt
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.377e-43
Identity = 87/115 (75.65%), Postives = 100/115 (86.96%), Query Frame = 1
Query:   10 SLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK 354
            SL+EFSS++GE+E ILKDI+ERA GKG FSYSRFFAVGLFRLLELANA EPTIL+KLCAALNINKRSVDRDLDVYRN+LSKLVQAKELLKE+++         +E  K+NEA+TK
Sbjct:  163 SLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277          
BLAST of EX570852 vs. SwissProt
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.262e-40
Identity = 82/120 (68.33%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    4 STSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK*FG 363
            S SL++FSS+EG++E +LKDIA RAG K  FSYSRFFAVGLFRLLELA+A +PT+L+KLCA+LNINK+SVDRDLDVYRNLLSKLVQAKELLKE+++          + QKANE I+K  G
Sbjct:  167 SASLVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLG 286          
BLAST of EX570852 vs. SwissProt
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.710e-39
Identity = 83/123 (67.48%), Postives = 97/123 (78.86%), Query Frame = 1
Query:    4 STSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK*FGQNQ 372
            + +L++FSS+EGE+E I KDIA+RAG K  F YSR FAVGLFRLLELAN  +PTILEKLCAALN+NK+SVDRDLDVYRNLLSKLVQAKELLKE+++          E QKANE +TK  G  Q
Sbjct:  168 ANTLVDFSSKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQAKELLKEYVE-REKKKRGERETQKANETVTKCLGDYQ 289          
BLAST of EX570852 vs. SwissProt
Match: THF1_ACAM1 (Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 4.754e-7
Identity = 30/91 (32.97%), Postives = 53/91 (58.24%), Query Frame = 1
Query:   40 EVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAM----EPTILE---KLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFID 291
            E++  L++IA+       F YSR FA+GLF LLEL+       E ++ E    +C  LNI++  + +DL++YR  L K+ Q ++ + + ++
Sbjct:  124 ELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNISESKLQKDLEIYRGNLDKIAQVRQAMDDILE 210          
BLAST of EX570852 vs. TAIR peptide
Match: AT2G20890.1 (| Symbols: PSB29, THF1 | photosystem II reaction center PSB29 protein | chr2:8987783-8989185 FORWARD LENGTH=300)

HSP 1 Score: 164.851 bits (416), Expect = 3.358e-41
Identity = 82/120 (68.33%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    4 STSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANAMEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEFIDXXXXXXXXXTEPQKANEAITK*FG 363
            S SL++FSS+EG++E +LKDIA RAG K  FSYSRFFAVGLFRLLELA+A +PT+L+KLCA+LNINK+SVDRDLDVYRNLLSKLVQAKELLKE+++          + QKANE I+K  G
Sbjct:  167 SASLVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLG 286          
The following BLAST results are available for this feature:
BLAST of EX570852 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7TCZ9_VITVI1.503e-4578.51Whole genome shotgun sequence of line PN40024, sca... [more]
C6T9W9_SOYBN3.348e-4580.83Putative uncharacterized protein OS=Glycine max PE... [more]
C0P9Q2_MAIZE3.465e-4275.00Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
B7FJN0_MEDTR5.910e-4279.31Putative uncharacterized protein OS=Medicago trunc... [more]
Q0D5I3_ORYSJ7.719e-4275.65Os07g0558500 protein OS=Oryza sativa subsp. japoni... [more]
A2YML2_ORYSI7.719e-4275.65Putative uncharacterized protein OS=Oryza sativa s... [more]
B6UAI2_MAIZE2.933e-4173.28Chloroplast-localized Ptr ToxA-binding protein1 OS... [more]
B4FEK7_MAIZE2.933e-4173.28Chloroplast-localized Ptr ToxA-binding protein1 OS... [more]
C5XBJ0_SORBI3.831e-4171.79Putative uncharacterized protein Sb02g036270 OS=So... [more]
B9RW80_RICCO1.456e-4072.50Protein THYLAKOID FORMATION1, chloroplast, putativ... [more]
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BLAST of EX570852 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
THF1_ORYSJ5.377e-4375.65Protein THYLAKOID FORMATION1, chloroplastic OS=Ory... [more]
THF1_ARATH3.262e-4068.33Protein THYLAKOID FORMATION 1, chloroplastic OS=Ar... [more]
THF1_SOLTU4.710e-3967.48Protein THYLAKOID FORMATION1, chloroplastic OS=Sol... [more]
THF1_ACAM14.754e-732.97Protein thf1 OS=Acaryochloris marina (strain MBIC ... [more]
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BLAST of EX570852 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G20890.13.358e-4168.33| Symbols: PSB29, THF1 | photosystem II reaction c... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017499Photosystem II Psp29, biogenesisPFAMPF11264ThylakoidFormatcoord: 8..107
score: 2
NoneNo IPR availableSEGsegsegcoord: 98..106
score
NoneNo IPR availableSEGsegsegcoord: 67..80
score
NoneNo IPR availableSEGsegsegcoord: 25..41
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX570852 ID=EX570852; Name=EX570852; organism=Pisum sativum; type=EST; length=633bp
AAATCGACTTCCCTTATTGAGTTTTCATCCCGCGAAGGAGAAGTTGAGGG
GATTTTAAAGGATATTGCAGAAAGAGCAGGTGGAAAGGGGGATTTCAGTT
ATAGTCGTTTCTTTGCAGTAGGCCTTTTTCGCCTTCTTGAGTTGGCAAAT
GCAATGGAACCGACAATTTTGGAAAAGCTTTGTGCGGCTTTGAATATCAA
CAAAAGAAGTGTGGATCGGGACTTGGACGTGTATCGTAATCTGCTTTCTA
AGTTGGTTCAAGCTAAAGAGCTGCTGAAGGAATTTATTGACAGAGAAAAG
AAGAAAAGAGAAGAAAGGACTGAACCACAGAAGGCTAATGAGGCCATTAC
AAAATGATTTGGACAAAACCAAGCTTCTGAGACGATCATCCGTTACAAAA
TTGGTTTCCTTGACTTAGTTTTGGCATTGGATATCAGAATGCGGCTCTTT
TATCATCTTGGTTTTGCATACTGTATTTATTGTATCTTTTGTGATGGGGA
TTCAGGTAAATTAATGTTTCAGTTTAAACACAGTTATTTCACCCTTTCAA
CACATTCGTATGTATTCTTTTCTTACATGTATTTTTCCTCTTGTTCAGTG
GCATATGTATTGTATACTTGTAGTTCTCAAATA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Biological Process
TermDefinition
GO:0010027thylakoid membrane organization
Vocabulary: INTERPRO
TermDefinition
IPR017499Thf1