FG532434

EST Overview


Name	FG532434
Unique Name	FG532434
Type	EST
Organism	Pisum sativum (pea)
Sequence length	284

Libraries


Library Name	Type
LIBEST_023217 MeriP Pisum sativum Shoot apical meristem ESTs	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of FG532434 vs. TrEMBL
Match: B7FFI2_MEDTR (Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.495e-31
Identity = 71/92 (77.17%), Postives = 73/92 (79.35%), Query Frame = -2

Query:    8 MEHRKYRNIMEQSVGSLPCNTRWLIFITSPKGWNGNLATTLPSKSEFSXXXXXXXXXXXXXPDLNSKRDKSRLDSLRLVSTRSIFLVFDFLM 283
            MEH+KY+N MEQSVGSLPCN RWLIFITSPKG NGNLATTLPS SE S             PDLN KRDKSRLDSLRLVSTRSIFLVFDFLM
Sbjct:   41 MEHKKYKNAMEQSVGSLPCNPRWLIFITSPKGLNGNLATTLPSNSELSSPNTTKRTRATTPPDLNLKRDKSRLDSLRLVSTRSIFLVFDFLM 132

[Close]

BLAST of FG532434 vs. TrEMBL
Match: B7FGM9_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.814e-24
Identity = 59/83 (71.08%), Postives = 61/83 (73.49%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            DRVETSLKES RDLSLF+FKS                   EGKVVAKLPF+PFGLVMKMSHR LQGNDPTDCSM FLYFLCSI
Sbjct:   76 DRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSI 158

[Close]

BLAST of FG532434 vs. TrEMBL
Match: C6TN19_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.981e-24
Identity = 58/83 (69.88%), Postives = 61/83 (73.49%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            DRVETSLKES RDLSLF+FKS                   EGKVVAKLPF+PFGL+MKMSHR LQGNDPTDCSM FLYFLCSI
Sbjct:   76 DRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSI 158

[Close]

BLAST of FG532434 vs. TrEMBL
Match: C6SW57_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.981e-24
Identity = 58/83 (69.88%), Postives = 61/83 (73.49%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            DRVETSLKES RDLSLF+FKS                   EGKVVAKLPF+PFGL+MKMSHR LQGNDPTDCSM FLYFLCSI
Sbjct:   76 DRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSI 158

[Close]

BLAST of FG532434 vs. TrEMBL
Match: Q4TZT9_GOSHI (Fb27 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.039e-21
Identity = 54/83 (65.06%), Postives = 60/83 (72.29%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            DRVETSLKES RDLSLF+FKS                   EGKVVAKLPF+P G+VMKMSHR L+G+D TDCSM+FLYFLCSI
Sbjct:   80 DRVETSLKESSRDLSLFKFKSGAVVALVLIVVFGFLNSLFEGKVVAKLPFKPIGIVMKMSHRGLKGDDSTDCSMVFLYFLCSI 162

[Close]

BLAST of FG532434 vs. TrEMBL
Match: D7TIB6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033465001 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.732e-21
Identity = 54/83 (65.06%), Postives = 56/83 (67.47%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            DRVETSLKES RDLSLF+FKS                   EGK VAKLPF P  +VMKMSHR L GNDPTDCSM FLYFLCSI
Sbjct:   79 DRVETSLKESSRDLSLFKFKSGAVVALVLFAVFGLLNSLFEGKSVAKLPFVPISIVMKMSHRGLNGNDPTDCSMAFLYFLCSI 161

[Close]

BLAST of FG532434 vs. TrEMBL
Match: B9SWJ7_RICCO (Transmembrane and coiled-coil domains protein, putative OS=Ricinus communis GN=RCOM_0279040 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.364e-20
Identity = 53/83 (63.86%), Postives = 56/83 (67.47%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            DRVETSLKES RDLSLF+FKS                   EGKVVAKLPF P  +V KMSHR LQG+D TDCSM FLYFLCSI
Sbjct:   78 DRVETSLKESSRDLSLFKFKSGAVVALVLFIVFGLLNSLFEGKVVAKLPFTPIAIVRKMSHRGLQGDDATDCSMAFLYFLCSI 160

[Close]

BLAST of FG532434 vs. TrEMBL
Match: Q9LHL8_ARATH (Genomic DNA, chromosome 3, P1 clone: MEC18 OS=Arabidopsis thaliana GN=At3g12030/T21B14_117 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.721e-20
Identity = 52/83 (62.65%), Postives = 56/83 (67.47%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            DRVETSLKES RDLSLF+FKS                   EGKVVAKLPF P  +V KMSHR L+G+DPTDCSM FLY LCSI
Sbjct:   81 DRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSI 163

[Close]

BLAST of FG532434 vs. TrEMBL
Match: D7KZN5_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_478555 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.721e-20
Identity = 52/83 (62.65%), Postives = 56/83 (67.47%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            DRVETSLKES RDLSLF+FKS                   EGKVVAKLPF P  +V KMSHR L+G+DPTDCSM FLY LCSI
Sbjct:   81 DRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSI 163

[Close]

BLAST of FG532434 vs. TrEMBL
Match: B9IIB5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_814433 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.721e-20
Identity = 53/83 (63.86%), Postives = 55/83 (66.27%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            DRVE+SLKES RDLSLF+FKS                   EGK VAKLPFQP  LVMKMSHR L G D TDCSM FLYFLCSI
Sbjct:   79 DRVESSLKESSRDLSLFKFKSGAVVALVLIVVFGLLNSLFEGKAVAKLPFQPITLVMKMSHRGLPGTDSTDCSMAFLYFLCSI 161

[Close]

BLAST of FG532434 vs. SwissProt
Match: TMCO1_RAT (Transmembrane and coiled-coil domains protein 1 OS=Rattus norvegicus GN=Tmco1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            +R E  LK + RDLS+   KS                   +G+VVAKLPF P   +  +SHR L G+D TDCS IFLY LC++
Sbjct:   70 ERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTM 152

[Close]

BLAST of FG532434 vs. SwissProt
Match: TMCO1_PONAB (Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            +R E  LK + RDLS+   KS                   +G+VVAKLPF P   +  +SHR L G+D TDCS IFLY LC++
Sbjct:   70 ERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTM 152

[Close]

BLAST of FG532434 vs. SwissProt
Match: TMCO1_MOUSE (Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmco1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            +R E  LK + RDLS+   KS                   +G+VVAKLPF P   +  +SHR L G+D TDCS IFLY LC++
Sbjct:   70 ERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTM 152

[Close]

BLAST of FG532434 vs. SwissProt
Match: TMCO1_HUMAN (Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMCO1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            +R E  LK + RDLS+   KS                   +G+VVAKLPF P   +  +SHR L G+D TDCS IFLY LC++
Sbjct:   70 ERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTM 152

[Close]

BLAST of FG532434 vs. SwissProt
Match: TMCO1_BOVIN (Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            +R E  LK + RDLS+   KS                   +G+VVAKLPF P   +  +SHR L G+D TDCS IFLY LC++
Sbjct:   70 ERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTM 152

[Close]

BLAST of FG532434 vs. SwissProt
Match: TMCO1_DICDI (Transmembrane and coiled-coil domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=tmco1 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 6.345e-10
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            +++E  LK + ++LS  + KS                   +G VV KLPF P G +  +SHR + G+D TDCSM F+Y +CS+
Sbjct:   72 EKIEEQLKIANKELSFSKMKSMFAVAISMIALFSYLNRIFDGVVVCKLPFVPIGFLQGISHRTIAGDDYTDCSMTFIYAICSM 154

[Close]

BLAST of FG532434 vs. TAIR peptide
Match: AT3G12030.1 (| Symbols: | Protein of unknown function DUF106, transmembrane | chr3:3834465-3835055 REVERSE LENGTH=196)

HSP 1 Score: 99.7525 bits (247), Expect = 3.676e-22
Identity = 52/83 (62.65%), Postives = 56/83 (67.47%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            DRVETSLKES RDLSLF+FKS                   EGKVVAKLPF P  +V KMSHR L+G+DPTDCSM FLY LCSI
Sbjct:   81 DRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSI 163

[Close]

BLAST of FG532434 vs. TAIR peptide
Match: AT5G06660.1 (| Symbols: | Protein of unknown function DUF106, transmembrane | chr5:2046863-2047453 FORWARD LENGTH=196)

HSP 1 Score: 95.1301 bits (235), Expect = 9.055e-21
Identity = 50/83 (60.24%), Postives = 55/83 (66.27%), Query Frame = 3

Query:   36 DRVETSLKESRRDLSLFEFKSXXXXXXXXXXXXXXXXXXXEGKVVAKLPFQPFGLVMKMSHRVLQGNDPTDCSMIFLYFLCSI 284
            DRVE+SLKES RDLSLF+FKS                   EGKVVAKLPF P  +V KMSHR L+G+D TDCSM FLY LCSI
Sbjct:   81 DRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSI 163

The following BLAST results are available for this feature:

BLAST of FG532434 vs. TrEMBL
BLAST of FG532434 vs. SwissProt
BLAST of FG532434 vs. TAIR peptide

BLAST of FG532434 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FFI2_MEDTR	5.495e-31	77.17	Putative uncharacterized protein (Fragment) OS=Med...	[more]
B7FGM9_MEDTR	3.814e-24	71.08	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6TN19_SOYBN	4.981e-24	69.88	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SW57_SOYBN	4.981e-24	69.88	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q4TZT9_GOSHI	1.039e-21	65.06	Fb27 OS=Gossypium hirsutum PE=2 SV=1	[more]
D7TIB6_VITVI	6.732e-21	65.06	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9SWJ7_RICCO	4.364e-20	63.86	Transmembrane and coiled-coil domains protein, put...	[more]
Q9LHL8_ARATH	9.721e-20	62.65	Genomic DNA, chromosome 3, P1 clone: MEC18 OS=Arab...	[more]
D7KZN5_ARALY	9.721e-20	62.65	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
B9IIB5_POPTR	9.721e-20	63.86	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

BLAST of FG532434 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 6


Match Name	E-value	Identity	Description
TMCO1_RAT	5.190e-12	42.17	Transmembrane and coiled-coil domains protein 1 OS...	[more]
TMCO1_PONAB	5.190e-12	42.17	Transmembrane and coiled-coil domain-containing pr...	[more]
TMCO1_MOUSE	5.190e-12	42.17	Transmembrane and coiled-coil domain-containing pr...	[more]
TMCO1_HUMAN	5.190e-12	42.17	Transmembrane and coiled-coil domain-containing pr...	[more]
TMCO1_BOVIN	5.190e-12	42.17	Transmembrane and coiled-coil domain-containing pr...	[more]
TMCO1_DICDI	6.345e-10	36.14	Transmembrane and coiled-coil domain-containing pr...	[more]

BLAST of FG532434 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G12030.1	3.676e-22	62.65	\| Symbols: \| Protein of unknown function DUF106, ...	[more]
AT5G06660.1	9.055e-21	60.24	\| Symbols: \| Protein of unknown function DUF106, ...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002809	Protein of unknown function DUF106, transmembrane	PFAM	PF01956	DUF106	coord: 4..94 score: 8
IPR008559	Uncharacterised conserved protein UCP023322, transmembrane eukaryotic	PANTHER	PTHR20917	PNAS-RELATED	coord: 2..94 score: 1.1
None	No IPR available	SEG	seg	seg	coord: 1..11 score: NAcoord: 33..51 score
None	No IPR available	SEG	seg	seg	coord: 49..62 score

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FG532434 ID=FG532434; Name=FG532434; organism=Pisum sativum; type=EST; length=284bp
AAACCACCATTAAGAAGTCGAAGACCAAAAAAATTGACCGTGTTGAGACA
AGCCTCAAAGAATCTAGGCGTGACTTGTCTCTCTTCGAGTTCAAATCAGG
GGGCGTGGTTGCTCTTGTTCTATTTGTGGTATTTGGATTGCTAAATTCAC
TCTTTGAAGGCAAGGTAGTTGCCAAATTGCCATTCCAGCCTTTTGGGCTT
GTTATGAAGATGAGCCATCGTGTGTTGCAAGGTAATGATCCCACTGATTG
TTCCATGATATTTCTATACTTCCTGTGTTCCATT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR002809	EMC3/TMCO1
IPR008559	TMCO1

Search form